| Chain | GOid | namespace | contents |
| P | 0000166 | molecular_function | nucleotide binding |
| P | 0000421 | cellular_component | autophagosome membrane |
| P | 0005215 | molecular_function | transporter activity |
| P | 0005515 | molecular_function | protein binding |
| P | 0005524 | molecular_function | ATP binding |
| P | 0005764 | cellular_component | lysosome |
| P | 0005765 | cellular_component | lysosomal membrane |
| P | 0005768 | cellular_component | endosome |
| P | 0005770 | cellular_component | late endosome |
| P | 0005771 | cellular_component | multivesicular body |
| P | 0005776 | cellular_component | autophagosome |
| P | 0006874 | biological_process | intracellular calcium ion homeostasis |
| P | 0006879 | biological_process | intracellular iron ion homeostasis |
| P | 0006882 | biological_process | intracellular zinc ion homeostasis |
| P | 0006914 | biological_process | autophagy |
| P | 0007041 | biological_process | lysosomal transport |
| P | 0008270 | molecular_function | zinc ion binding |
| P | 0008289 | molecular_function | lipid binding |
| P | 0010628 | biological_process | positive regulation of gene expression |
| P | 0010821 | biological_process | regulation of mitochondrion organization |
| P | 0012506 | cellular_component | vesicle membrane |
| P | 0015203 | molecular_function | polyamine transmembrane transporter activity |
| P | 0015417 | molecular_function | ABC-type polyamine transporter activity |
| P | 0015662 | molecular_function | P-type ion transporter activity |
| P | 0016020 | cellular_component | membrane |
| P | 0016241 | biological_process | regulation of macroautophagy |
| P | 0016243 | biological_process | regulation of autophagosome size |
| P | 0016887 | molecular_function | ATP hydrolysis activity |
| P | 0019829 | molecular_function | ATPase-coupled monoatomic cation transmembrane transporter activity |
| P | 0030003 | biological_process | intracellular monoatomic cation homeostasis |
| P | 0030133 | cellular_component | transport vesicle |
| P | 0030145 | molecular_function | manganese ion binding |
| P | 0031902 | cellular_component | late endosome membrane |
| P | 0031982 | cellular_component | vesicle |
| P | 0032585 | cellular_component | multivesicular body membrane |
| P | 0033157 | biological_process | regulation of intracellular protein transport |
| P | 0034220 | biological_process | monoatomic ion transmembrane transport |
| P | 0034599 | biological_process | cellular response to oxidative stress |
| P | 0043005 | cellular_component | neuron projection |
| P | 0043025 | cellular_component | neuronal cell body |
| P | 0043202 | cellular_component | lysosomal lumen |
| P | 0043523 | biological_process | regulation of neuron apoptotic process |
| P | 0046777 | biological_process | protein autophosphorylation |
| P | 0046872 | molecular_function | metal ion binding |
| P | 0050714 | biological_process | positive regulation of protein secretion |
| P | 0052548 | biological_process | regulation of endopeptidase activity |
| P | 0055085 | biological_process | transmembrane transport |
| P | 0055088 | biological_process | lipid homeostasis |
| P | 0061462 | biological_process | protein localization to lysosome |
| P | 0061909 | biological_process | autophagosome-lysosome fusion |
| P | 0070300 | molecular_function | phosphatidic acid binding |
| P | 0071287 | biological_process | cellular response to manganese ion |
| P | 0071294 | biological_process | cellular response to zinc ion |
| P | 0080025 | molecular_function | phosphatidylinositol-3,5-bisphosphate binding |
| P | 0097734 | biological_process | extracellular exosome biogenesis |
| P | 0098655 | biological_process | monoatomic cation transmembrane transport |
| P | 0140358 | molecular_function | P-type transmembrane transporter activity |
| P | 1900180 | biological_process | regulation of protein localization to nucleus |
| P | 1902047 | biological_process | polyamine transmembrane transport |
| P | 1903135 | molecular_function | cupric ion binding |
| P | 1903146 | biological_process | regulation of autophagy of mitochondrion |
| P | 1903543 | biological_process | positive regulation of exosomal secretion |
| P | 1903710 | biological_process | spermine transmembrane transport |
| P | 1904714 | biological_process | regulation of chaperone-mediated autophagy |
| P | 1905037 | biological_process | autophagosome organization |
| P | 1905165 | biological_process | regulation of lysosomal protein catabolic process |
| P | 1905166 | biological_process | negative regulation of lysosomal protein catabolic process |
| P | 1990938 | biological_process | peptidyl-aspartic acid autophosphorylation |
| P | 2000152 | biological_process | regulation of ubiquitin-specific protease activity |
