Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

8I9P

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Mak16

This is a non-PDB format compatible entry.

Functional Information from GO Data

Chain	GOid	namespace	contents
CA	0000027	biological_process	ribosomal large subunit assembly
CA	0003723	molecular_function	RNA binding
CA	0005730	cellular_component	nucleolus
CA	0006364	biological_process	rRNA processing
CA	0019843	molecular_function	rRNA binding
CB	0000470	biological_process	maturation of LSU-rRNA
CB	0003723	molecular_function	RNA binding
CB	0022625	cellular_component	cytosolic large ribosomal subunit
CB	0030686	cellular_component	90S preribosome
CB	1990904	cellular_component	ribonucleoprotein complex
Cc	0005634	cellular_component	nucleus
Cc	0006364	biological_process	rRNA processing
Cc	0030688	cellular_component	preribosome, small subunit precursor
CC	0000463	biological_process	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
CC	0000466	biological_process	maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
CC	0005634	cellular_component	nucleus
CC	0005654	cellular_component	nucleoplasm
CC	0005730	cellular_component	nucleolus
CC	0006364	biological_process	rRNA processing
CC	0030687	cellular_component	preribosome, large subunit precursor
CC	0042254	biological_process	ribosome biogenesis
CC	0042273	biological_process	ribosomal large subunit biogenesis
CC	0043021	molecular_function	ribonucleoprotein complex binding
CC	0070545	cellular_component	PeBoW complex
Cd	0000460	biological_process	maturation of 5.8S rRNA
Cd	0000470	biological_process	maturation of LSU-rRNA
Cd	0005730	cellular_component	nucleolus
Cd	0006364	biological_process	rRNA processing
Cd	0019843	molecular_function	rRNA binding
Cd	0030687	cellular_component	preribosome, large subunit precursor
Cd	0042134	molecular_function	rRNA primary transcript binding
Ce	0000460	biological_process	maturation of 5.8S rRNA
Ce	0000470	biological_process	maturation of LSU-rRNA
Ce	0005634	cellular_component	nucleus
Ce	0005730	cellular_component	nucleolus
Ce	0030687	cellular_component	preribosome, large subunit precursor
CE	0000463	biological_process	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
CE	0003676	molecular_function	nucleic acid binding
CE	0003723	molecular_function	RNA binding
CE	0003724	molecular_function	RNA helicase activity
CE	0004386	molecular_function	helicase activity
CE	0005524	molecular_function	ATP binding
CE	0005730	cellular_component	nucleolus
CE	0006364	biological_process	rRNA processing
CE	0016787	molecular_function	hydrolase activity
CE	0016887	molecular_function	ATP hydrolysis activity
CE	0042254	biological_process	ribosome biogenesis
CI	0000463	biological_process	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
CI	0003676	molecular_function	nucleic acid binding
CI	0003723	molecular_function	RNA binding
CI	0005730	cellular_component	nucleolus
CJ	0000463	biological_process	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
CJ	0000466	biological_process	maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
CJ	0003723	molecular_function	RNA binding
CJ	0005634	cellular_component	nucleus
CJ	0005654	cellular_component	nucleoplasm
CJ	0005730	cellular_component	nucleolus
CJ	0006364	biological_process	rRNA processing
CJ	0030687	cellular_component	preribosome, large subunit precursor
CJ	0042254	biological_process	ribosome biogenesis
CJ	0042273	biological_process	ribosomal large subunit biogenesis
CJ	0043021	molecular_function	ribonucleoprotein complex binding
CJ	0070545	cellular_component	PeBoW complex
CM	0000463	biological_process	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
CM	0003723	molecular_function	RNA binding
CM	0003735	molecular_function	structural constituent of ribosome
CM	0005840	cellular_component	ribosome
CM	0022625	cellular_component	cytosolic large ribosomal subunit
CR	0005730	cellular_component	nucleolus
CR	0042273	biological_process	ribosomal large subunit biogenesis
CU	0005634	cellular_component	nucleus
CU	0005730	cellular_component	nucleolus
CU	0006364	biological_process	rRNA processing
CU	0030687	cellular_component	preribosome, large subunit precursor
CU	0034399	cellular_component	nuclear periphery
CU	0042254	biological_process	ribosome biogenesis
CU	0042273	biological_process	ribosomal large subunit biogenesis
LC	0003723	molecular_function	RNA binding
LC	0003735	molecular_function	structural constituent of ribosome
LC	0005840	cellular_component	ribosome
LC	0006412	biological_process	translation
LC	0022625	cellular_component	cytosolic large ribosomal subunit
LC	1990904	cellular_component	ribonucleoprotein complex
Le	0003735	molecular_function	structural constituent of ribosome
Le	0005840	cellular_component	ribosome
Le	0006412	biological_process	translation
Le	0022625	cellular_component	cytosolic large ribosomal subunit
Le	1990904	cellular_component	ribonucleoprotein complex
LE	0000027	biological_process	ribosomal large subunit assembly
LE	0002181	biological_process	cytoplasmic translation
LE	0003723	molecular_function	RNA binding
LE	0003735	molecular_function	structural constituent of ribosome
LE	0005840	cellular_component	ribosome
LE	0006412	biological_process	translation
LE	0022625	cellular_component	cytosolic large ribosomal subunit
LE	1990904	cellular_component	ribonucleoprotein complex
Lf	0002181	biological_process	cytoplasmic translation
Lf	0003735	molecular_function	structural constituent of ribosome
Lf	0005840	cellular_component	ribosome
Lf	0006412	biological_process	translation
Lf	0022625	cellular_component	cytosolic large ribosomal subunit
Lf	0042273	biological_process	ribosomal large subunit biogenesis
Lf	1990904	cellular_component	ribonucleoprotein complex
LF	0000463	biological_process	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
LF	0003723	molecular_function	RNA binding
LF	0003735	molecular_function	structural constituent of ribosome
LF	0005840	cellular_component	ribosome
LF	0022625	cellular_component	cytosolic large ribosomal subunit
LG	0000470	biological_process	maturation of LSU-rRNA
LG	0003723	molecular_function	RNA binding
LG	0005840	cellular_component	ribosome
LG	0022625	cellular_component	cytosolic large ribosomal subunit
LG	0042254	biological_process	ribosome biogenesis
LG	1990904	cellular_component	ribonucleoprotein complex
Lh	0003735	molecular_function	structural constituent of ribosome
Lh	0004576	molecular_function	oligosaccharyl transferase activity
Lh	0004579	molecular_function	dolichyl-diphosphooligosaccharide-protein glycotransferase activity
Lh	0005840	cellular_component	ribosome
Lh	0006412	biological_process	translation
Lh	0006486	biological_process	protein glycosylation
Lh	0016020	cellular_component	membrane
Lh	0016757	molecular_function	glycosyltransferase activity
Lh	0018279	biological_process	protein N-linked glycosylation via asparagine
Lh	0043687	biological_process	post-translational protein modification
Lh	0046872	molecular_function	metal ion binding
Lh	1990904	cellular_component	ribonucleoprotein complex
Li	0002181	biological_process	cytoplasmic translation
Li	0003735	molecular_function	structural constituent of ribosome
Li	0005840	cellular_component	ribosome
Li	0006412	biological_process	translation
Li	0022625	cellular_component	cytosolic large ribosomal subunit
Li	1990904	cellular_component	ribonucleoprotein complex
Lj	0003723	molecular_function	RNA binding
Lj	0003735	molecular_function	structural constituent of ribosome
Lj	0005840	cellular_component	ribosome
Lj	0006412	biological_process	translation
Lj	0019843	molecular_function	rRNA binding
Lj	0022625	cellular_component	cytosolic large ribosomal subunit
Lj	0046872	molecular_function	metal ion binding
Lj	1990904	cellular_component	ribonucleoprotein complex
LL	0003723	molecular_function	RNA binding
LL	0003735	molecular_function	structural constituent of ribosome
LL	0005840	cellular_component	ribosome
LL	0006412	biological_process	translation
LL	0022625	cellular_component	cytosolic large ribosomal subunit
LL	1990904	cellular_component	ribonucleoprotein complex
LM	0003723	molecular_function	RNA binding
LM	0003735	molecular_function	structural constituent of ribosome
LM	0005840	cellular_component	ribosome
LM	0006412	biological_process	translation
LM	0022625	cellular_component	cytosolic large ribosomal subunit
LM	0042273	biological_process	ribosomal large subunit biogenesis
LM	1990904	cellular_component	ribonucleoprotein complex
LN	0002181	biological_process	cytoplasmic translation
LN	0003723	molecular_function	RNA binding
LN	0003735	molecular_function	structural constituent of ribosome
LN	0005840	cellular_component	ribosome
LN	0006412	biological_process	translation
LN	0022625	cellular_component	cytosolic large ribosomal subunit
LN	0022626	cellular_component	cytosolic ribosome
LN	1990904	cellular_component	ribonucleoprotein complex
LO	0003729	molecular_function	mRNA binding
LO	0003735	molecular_function	structural constituent of ribosome
LO	0005840	cellular_component	ribosome
LO	0006412	biological_process	translation
LO	0015934	cellular_component	large ribosomal subunit
LO	0017148	biological_process	negative regulation of translation
LO	0022625	cellular_component	cytosolic large ribosomal subunit
LO	1990904	cellular_component	ribonucleoprotein complex
LP	0002181	biological_process	cytoplasmic translation
LP	0003735	molecular_function	structural constituent of ribosome
LP	0005840	cellular_component	ribosome
LP	0006412	biological_process	translation
LP	0015934	cellular_component	large ribosomal subunit
LP	0022625	cellular_component	cytosolic large ribosomal subunit
LP	1990904	cellular_component	ribonucleoprotein complex
LQ	0003723	molecular_function	RNA binding
LQ	0003735	molecular_function	structural constituent of ribosome
LQ	0005737	cellular_component	cytoplasm
LQ	0005840	cellular_component	ribosome
LQ	0006412	biological_process	translation
LQ	0022625	cellular_component	cytosolic large ribosomal subunit
LQ	0043232	cellular_component	intracellular non-membrane-bounded organelle
LQ	1990904	cellular_component	ribonucleoprotein complex
LS	0003735	molecular_function	structural constituent of ribosome
LS	0005840	cellular_component	ribosome
LS	0006412	biological_process	translation
LS	0022625	cellular_component	cytosolic large ribosomal subunit
LS	1990904	cellular_component	ribonucleoprotein complex
LT	0003735	molecular_function	structural constituent of ribosome
LT	0005840	cellular_component	ribosome
LT	0006412	biological_process	translation
LT	0022625	cellular_component	cytosolic large ribosomal subunit
LT	1990904	cellular_component	ribonucleoprotein complex
LX	0000027	biological_process	ribosomal large subunit assembly
LX	0003735	molecular_function	structural constituent of ribosome
LX	0005840	cellular_component	ribosome
LX	0006412	biological_process	translation
LX	0019843	molecular_function	rRNA binding
LX	0022625	cellular_component	cytosolic large ribosomal subunit
LX	1990904	cellular_component	ribonucleoprotein complex
LY	0002181	biological_process	cytoplasmic translation
LY	0003723	molecular_function	RNA binding
LY	0003735	molecular_function	structural constituent of ribosome
LY	0005840	cellular_component	ribosome
LY	0006412	biological_process	translation
LY	0015934	cellular_component	large ribosomal subunit
LY	0022625	cellular_component	cytosolic large ribosomal subunit
LY	0042273	biological_process	ribosomal large subunit biogenesis

Functional Information from PROSITE/UniProt

site_id	PS00039
Number of Residues	9
Details	DEAD_ATP_HELICASE DEAD-box subfamily ATP-dependent helicases signature. IIDEADRiL

Chain	Residue	Details
CE	ILE262-LEU270

site_id	PS00464
Number of Residues	25
Details	RIBOSOMAL_L22 Ribosomal protein L22 signature. RrrTyRAhGRinpymsnpCHIELiL

Chain	Residue	Details
LP	ARG126-LEU150

site_id	PS00678
Number of Residues	15
Details	WD_REPEATS_1 Trp-Asp (WD) repeats signature. LATGgdDgTVRVWEL

Chain	Residue	Details
CC	LEU468-LEU482

site_id	PS00783
Number of Residues	24
Details	RIBOSOMAL_L13 Ribosomal protein L13 signature. VRGMIPhktarGAaalerLkVFeG

Chain	Residue	Details
LO	VAL86-GLY109

site_id	PS00939
Number of Residues	27
Details	RIBOSOMAL_L1E Ribosomal protein L1e signature. NqgqKrfATaSALaASAvapllmaRGH

Chain	Residue	Details
LC	ASN115-HIS141

site_id	PS01077
Number of Residues	20
Details	RIBOSOMAL_L37E Ribosomal protein L37e signature. GTsSfGkRhnkt.HglCrRCG

Chain	Residue	Details
Lj	GLY4-GLY23

site_id	PS01082
Number of Residues	18
Details	RIBOSOMAL_L7AE Ribosomal protein L7Ae signature. CrkmgIPYaiIkGKarLG

Chain	Residue	Details
LG	CYS173-GLY190

site_id	PS01104
Number of Residues	15
Details	RIBOSOMAL_L13E Ribosomal protein L13e signature. RlGRGFTLeELkaaG

Chain	Residue	Details
LL	ARG70-GLY84

site_id	PS01105
Number of Residues	22
Details	RIBOSOMAL_L35AE Ribosomal protein L35Ae signature. GKItRpHGnsGvVrAkFthpLP

Chain	Residue	Details
Lf	GLY71-PRO92

site_id	PS01106
Number of Residues	18
Details	RIBOSOMAL_L18E Ribosomal protein L18e signature. RrLfmSRinRPpVSLsRI

Chain	Residue	Details
LQ	ARG78-ILE95

site_id	PS01170
Number of Residues	19
Details	RIBOSOMAL_L6E Ribosomal protein L6e signature. NgvPLRRvnarYVIATSv.K

Chain	Residue	Details
LE	ASN90-LYS108

site_id	PS01171
Number of Residues	26
Details	RIBOSOMAL_L21E Ribosomal protein L21e signature. GDiVdikvngavqk.GmpHkfYhGkTG

Chain	Residue	Details
LT	GLY37-GLY62

site_id	PS01190
Number of Residues	11
Details	RIBOSOMAL_L36E Ribosomal protein L36e signature. PYERRvIELLR

Chain	Residue	Details
Li	PRO61-ARG71

site_id	PS01194
Number of Residues	24
Details	RIBOSOMAL_L15E Ribosomal protein L15e signature. DKARrLGYkAkqGYVIYRvRVrRG

Chain	Residue	Details
LN	ASP46-GLY69

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		Validation report (PDF)