Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

8HKX

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

This is a non-PDB format compatible entry.

Functional Information from GO Data

Chain	GOid	namespace	contents
AS2P	0003735	molecular_function	structural constituent of ribosome
AS2P	0005840	cellular_component	ribosome
AS2P	0006412	biological_process	translation
AS2P	0015935	cellular_component	small ribosomal subunit
AS3P	0003676	molecular_function	nucleic acid binding
AS3P	0003723	molecular_function	RNA binding
AS3P	0003735	molecular_function	structural constituent of ribosome
AS3P	0006412	biological_process	translation
AS3P	0015935	cellular_component	small ribosomal subunit
AS4E	0003723	molecular_function	RNA binding
AS4E	0003735	molecular_function	structural constituent of ribosome
AS4E	0005840	cellular_component	ribosome
AS4E	0006412	biological_process	translation
AS4E	0019843	molecular_function	rRNA binding
AS4E	0022627	cellular_component	cytosolic small ribosomal subunit
AS4E	1990904	cellular_component	ribonucleoprotein complex
AS4P	0003723	molecular_function	RNA binding
AS4P	0003735	molecular_function	structural constituent of ribosome
AS4P	0005840	cellular_component	ribosome
AS4P	0006412	biological_process	translation
AS4P	0015935	cellular_component	small ribosomal subunit
AS4P	0019843	molecular_function	rRNA binding
AS4P	0042274	biological_process	ribosomal small subunit biogenesis
AS4P	0043226	cellular_component	organelle
AS4P	1990904	cellular_component	ribonucleoprotein complex
AS5P	0003723	molecular_function	RNA binding
AS5P	0003735	molecular_function	structural constituent of ribosome
AS5P	0005840	cellular_component	ribosome
AS5P	0006412	biological_process	translation
AS5P	0015935	cellular_component	small ribosomal subunit
AS5P	0019843	molecular_function	rRNA binding
AS5P	0022627	cellular_component	cytosolic small ribosomal subunit
AS5P	1990904	cellular_component	ribonucleoprotein complex
AS6E	0003735	molecular_function	structural constituent of ribosome
AS6E	0005840	cellular_component	ribosome
AS6E	0006412	biological_process	translation
AS7P	0003723	molecular_function	RNA binding
AS7P	0003735	molecular_function	structural constituent of ribosome
AS7P	0005840	cellular_component	ribosome
AS7P	0006412	biological_process	translation
AS7P	0015935	cellular_component	small ribosomal subunit
AS7P	0019843	molecular_function	rRNA binding
AS7P	1990904	cellular_component	ribonucleoprotein complex
AS8E	0003735	molecular_function	structural constituent of ribosome
AS8E	0005840	cellular_component	ribosome
AS8E	0006412	biological_process	translation
AS8E	1990904	cellular_component	ribonucleoprotein complex
AS8P	0003723	molecular_function	RNA binding
AS8P	0003735	molecular_function	structural constituent of ribosome
AS8P	0005840	cellular_component	ribosome
AS8P	0006412	biological_process	translation
AS8P	0019843	molecular_function	rRNA binding
AS8P	1990904	cellular_component	ribonucleoprotein complex
AS9P	0000462	biological_process	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
AS9P	0003723	molecular_function	RNA binding
AS9P	0003735	molecular_function	structural constituent of ribosome
AS9P	0005840	cellular_component	ribosome
AS9P	0006412	biological_process	translation
AS9P	0015935	cellular_component	small ribosomal subunit
AS9P	0022627	cellular_component	cytosolic small ribosomal subunit
AS9P	1990904	cellular_component	ribonucleoprotein complex
S10P	0000049	molecular_function	tRNA binding
S10P	0003723	molecular_function	RNA binding
S10P	0003735	molecular_function	structural constituent of ribosome
S10P	0005840	cellular_component	ribosome
S10P	0006412	biological_process	translation
S10P	0015935	cellular_component	small ribosomal subunit
S10P	1990904	cellular_component	ribonucleoprotein complex
S11P	0003723	molecular_function	RNA binding
S11P	0003735	molecular_function	structural constituent of ribosome
S11P	0005840	cellular_component	ribosome
S11P	0006412	biological_process	translation
S11P	0019843	molecular_function	rRNA binding
S11P	1990904	cellular_component	ribonucleoprotein complex
S12P	0003723	molecular_function	RNA binding
S12P	0003735	molecular_function	structural constituent of ribosome
S12P	0005840	cellular_component	ribosome
S12P	0006412	biological_process	translation
S12P	0015935	cellular_component	small ribosomal subunit
S12P	0019843	molecular_function	rRNA binding
S12P	1990904	cellular_component	ribonucleoprotein complex
S13P	0003676	molecular_function	nucleic acid binding
S13P	0003723	molecular_function	RNA binding
S13P	0003735	molecular_function	structural constituent of ribosome
S13P	0005840	cellular_component	ribosome
S13P	0006412	biological_process	translation
S14P	0002181	biological_process	cytoplasmic translation
S14P	0003723	molecular_function	RNA binding
S14P	0003735	molecular_function	structural constituent of ribosome
S14P	0005840	cellular_component	ribosome
S14P	0006412	biological_process	translation
S14P	0008270	molecular_function	zinc ion binding
S14P	0015935	cellular_component	small ribosomal subunit
S14P	0019843	molecular_function	rRNA binding
S14P	0022627	cellular_component	cytosolic small ribosomal subunit
S14P	0046872	molecular_function	metal ion binding
S14P	1990904	cellular_component	ribonucleoprotein complex
S15P	0003735	molecular_function	structural constituent of ribosome
S15P	0005840	cellular_component	ribosome
S15P	0006412	biological_process	translation
S15P	0022627	cellular_component	cytosolic small ribosomal subunit
S15P	0070181	molecular_function	small ribosomal subunit rRNA binding
S15P	1990904	cellular_component	ribonucleoprotein complex
S17E	0003735	molecular_function	structural constituent of ribosome
S17E	0005840	cellular_component	ribosome
S17E	0006412	biological_process	translation
S17P	0003723	molecular_function	RNA binding
S17P	0003735	molecular_function	structural constituent of ribosome
S17P	0005840	cellular_component	ribosome
S17P	0006412	biological_process	translation
S17P	0019843	molecular_function	rRNA binding
S17P	0022627	cellular_component	cytosolic small ribosomal subunit
S17P	1990904	cellular_component	ribonucleoprotein complex
S19E	0000028	biological_process	ribosomal small subunit assembly
S19E	0003723	molecular_function	RNA binding
S19E	0003735	molecular_function	structural constituent of ribosome
S19E	0005840	cellular_component	ribosome
S19E	0006412	biological_process	translation
S19E	0022627	cellular_component	cytosolic small ribosomal subunit
S19E	1990904	cellular_component	ribonucleoprotein complex
S19P	0003723	molecular_function	RNA binding
S19P	0003735	molecular_function	structural constituent of ribosome
S19P	0005840	cellular_component	ribosome
S19P	0006412	biological_process	translation
S19P	0015935	cellular_component	small ribosomal subunit
S24E	0003735	molecular_function	structural constituent of ribosome
S24E	0005840	cellular_component	ribosome
S24E	0006412	biological_process	translation
S27A	0003735	molecular_function	structural constituent of ribosome
S27A	0005840	cellular_component	ribosome
S27A	0006412	biological_process	translation
S27E	0003735	molecular_function	structural constituent of ribosome
S27E	0005840	cellular_component	ribosome
S27E	0006412	biological_process	translation
S28E	0003735	molecular_function	structural constituent of ribosome
S28E	0005840	cellular_component	ribosome
S28E	0006412	biological_process	translation
S3AE	0003735	molecular_function	structural constituent of ribosome
S3AE	0005840	cellular_component	ribosome
S3AE	0006412	biological_process	translation
S3AE	1990904	cellular_component	ribonucleoprotein complex
SL7A	0001682	biological_process	tRNA 5'-leader removal
SL7A	0003723	molecular_function	RNA binding
SL7A	0003735	molecular_function	structural constituent of ribosome
SL7A	0004526	molecular_function	ribonuclease P activity
SL7A	0005737	cellular_component	cytoplasm
SL7A	0005840	cellular_component	ribosome
SL7A	0006412	biological_process	translation
SL7A	0008033	biological_process	tRNA processing
SL7A	0019843	molecular_function	rRNA binding
SL7A	0042254	biological_process	ribosome biogenesis
SL7A	1990904	cellular_component	ribonucleoprotein complex

Functional Information from PROSITE/UniProt

site_id	PS00052
Number of Residues	27
Details	RIBOSOMAL_S7 Ribosomal protein S7 signature. ErLinnLMrpgrnkGKKmlaynIVktT

Chain	Residue	Details
AS7P	GLU61-THR87

site_id	PS00053
Number of Residues	18
Details	RIBOSOMAL_S8 Ribosomal protein S8 signature. GiiIISTPkGVMshrdGI

Chain	Residue	Details
AS8P	GLY103-ILE120

site_id	PS00054
Number of Residues	23
Details	RIBOSOMAL_S11 Ribosomal protein S11 signature. IrALarA.GFiIgrieDvTPlPHD

Chain	Residue	Details
S11P	ILE97-ASP119

site_id	PS00055
Number of Residues	8
Details	RIBOSOMAL_S12 Ribosomal protein S12 signature. RqPNSAvR

Chain	Residue	Details
S12P	ARG63-ARG70

site_id	PS00323
Number of Residues	25
Details	RIBOSOMAL_S19 Ribosomal protein S19 signature. NGKefvefqVvpemIGryLGEYsiT

Chain	Residue	Details
S19P	ASN92-THR116

site_id	PS00360
Number of Residues	19
Details	RIBOSOMAL_S9 Ribosomal protein S9 signature. GGGimGQadAarmAlARAL

Chain	Residue	Details
AS9P	GLY73-LEU91

site_id	PS00361
Number of Residues	16
Details	RIBOSOMAL_S10 Ribosomal protein S10 signature. AqktGIqvsGPIpLPT

Chain	Residue	Details
S10P	ALA28-THR43

site_id	PS00362
Number of Residues	31
Details	RIBOSOMAL_S15 Ribosomal protein S15 signature. IrrHLfeyPkDksAkrgLeeVeskirrLasY

Chain	Residue	Details
S15P	ILE96-TYR126

site_id	PS00527
Number of Residues	22
Details	RIBOSOMAL_S14 Ribosomal protein S14 signature. R.Cgsrdsviqkyg.LYLCRqCFR

Chain	Residue	Details
S14P	ARG21-ARG42

site_id	PS00529
Number of Residues	23
Details	RIBOSOMAL_S24E Ribosomal protein S24e signature. YGsgISyARVnVYKDkdslqklE

Chain	Residue	Details
S24E	TYR72-GLU94

site_id	PS00548
Number of Residues	37
Details	RIBOSOMAL_S3 Ribosomal protein S3 signature. AKyeklkeGtVykSgqqLekiIDraigiamLkpGvyG

Chain	Residue	Details
AS3P	ALA142-GLY178

site_id	PS00585
Number of Residues	33
Details	RIBOSOMAL_S5 Ribosomal protein S5 signature. GElsrYkVliVMGNmd.GyISyGtgkak.QLrv.AI

Chain	Residue	Details
AS5P	GLY76-ILE108

site_id	PS00632
Number of Residues	25
Details	RIBOSOMAL_S4 Ribosomal protein S4 signature. LErRLqtiVYKkglArTiyqARqLI

Chain	Residue	Details
AS4P	LEU102-ILE126

site_id	PS00646
Number of Residues	14
Details	RIBOSOMAL_S13_1 Ribosomal protein S13 signature. RGvRHslGlkVRGQ

Chain	Residue	Details
S13P	ARG118-GLN131

site_id	PS00712
Number of Residues	16
Details	RIBOSOMAL_S17E Ribosomal protein S17e signature. VsSKkVKNrIAGYlTR

Chain	Residue	Details
S17E	VAL41-ARG56

site_id	PS00961
Number of Residues	9
Details	RIBOSOMAL_S28E Ribosomal protein S28e signature. ETEREARkL

Chain	Residue	Details
S28E	GLU72-LEU80

site_id	PS00962
Number of Residues	12
Details	RIBOSOMAL_S2_1 Ribosomal protein S2 signature 1. LdTYLSAGVHIG

Chain	Residue	Details
AS2P	LEU33-GLY44

site_id	PS00963
Number of Residues	25
Details	RIBOSOMAL_S2_2 Ribosomal protein S2 signature 2. PevLIVtDprtDlqaIkEaskvGIP

Chain	Residue	Details
AS2P	PRO136-PRO160

site_id	PS01082
Number of Residues	18
Details	RIBOSOMAL_L7AE Ribosomal protein L7Ae signature. CeekkIPYvyVpSKksLG

Chain	Residue	Details
SL7A	CYS70-GLY87

site_id	PS01168
Number of Residues	33
Details	RIBOSOMAL_S27E Ribosomal protein S27e signature. KCrqCnneqviFSnAtfpvrClsCGaqIviPkG

Chain	Residue	Details
S27E	LYS20-GLY52

site_id	PS01193
Number of Residues	20
Details	RIBOSOMAL_S8E Ribosomal protein S8e signature. RkiTGGqkgkn.RdKrKyELG

Chain	Residue	Details
AS8E	ARG10-GLY29

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	148
Details	Domain: {"description":"S4 RNA-binding"}

Chain

Residue

Details

site_id	SWS_FT_FI2
Number of Residues	63
Details	Domain: {"description":"S5 DRBM","evidences":[{"source":"HAMAP-Rule","id":"MF_01307","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

site_id	SWS_FT_FI3
Number of Residues	22
Details	Zinc finger: {"description":"C4-type","evidences":[{"source":"HAMAP-Rule","id":"MF_00371","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

site_id	SWS_FT_FI4
Number of Residues	4
Details	Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00371","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

site_id	SWS_FT_FI5
Number of Residues	79
Details	Domain: {"description":"KH type-2","evidences":[{"source":"HAMAP-Rule","id":"MF_01309","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

site_id	SWS_FT_FI6
Number of Residues	4
Details	Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_01364","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

site_id	SWS_FT_FI7
Number of Residues	22
Details	Zinc finger: {"description":"C4-type","evidences":[{"source":"HAMAP-Rule","id":"MF_00777","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

site_id	SWS_FT_FI8
Number of Residues	4
Details	Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00777","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		Validation report (PDF)