8EVJ
CX3CR1 nucleosome bound PU.1 and C/EBPa
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000786 | cellular_component | nucleosome |
A | 0003677 | molecular_function | DNA binding |
A | 0005515 | molecular_function | protein binding |
A | 0005576 | cellular_component | extracellular region |
A | 0005634 | cellular_component | nucleus |
A | 0005654 | cellular_component | nucleoplasm |
A | 0005694 | cellular_component | chromosome |
A | 0006325 | biological_process | chromatin organization |
A | 0006334 | biological_process | nucleosome assembly |
A | 0010467 | biological_process | gene expression |
A | 0016020 | cellular_component | membrane |
A | 0030527 | molecular_function | structural constituent of chromatin |
A | 0032200 | biological_process | telomere organization |
A | 0032991 | cellular_component | protein-containing complex |
A | 0040029 | biological_process | epigenetic regulation of gene expression |
A | 0045296 | molecular_function | cadherin binding |
A | 0046982 | molecular_function | protein heterodimerization activity |
A | 0070062 | cellular_component | extracellular exosome |
B | 0000781 | cellular_component | chromosome, telomeric region |
B | 0000786 | cellular_component | nucleosome |
B | 0003677 | molecular_function | DNA binding |
B | 0003723 | molecular_function | RNA binding |
B | 0005515 | molecular_function | protein binding |
B | 0005576 | cellular_component | extracellular region |
B | 0005634 | cellular_component | nucleus |
B | 0005654 | cellular_component | nucleoplasm |
B | 0005694 | cellular_component | chromosome |
B | 0006325 | biological_process | chromatin organization |
B | 0006334 | biological_process | nucleosome assembly |
B | 0016020 | cellular_component | membrane |
B | 0030527 | molecular_function | structural constituent of chromatin |
B | 0032200 | biological_process | telomere organization |
B | 0032991 | cellular_component | protein-containing complex |
B | 0043505 | cellular_component | CENP-A containing nucleosome |
B | 0045653 | biological_process | negative regulation of megakaryocyte differentiation |
B | 0046982 | molecular_function | protein heterodimerization activity |
B | 0061644 | biological_process | protein localization to CENP-A containing chromatin |
B | 0070062 | cellular_component | extracellular exosome |
C | 0000786 | cellular_component | nucleosome |
C | 0003677 | molecular_function | DNA binding |
C | 0005634 | cellular_component | nucleus |
C | 0005694 | cellular_component | chromosome |
C | 0030527 | molecular_function | structural constituent of chromatin |
C | 0031507 | biological_process | heterochromatin formation |
C | 0046982 | molecular_function | protein heterodimerization activity |
C | 0070062 | cellular_component | extracellular exosome |
D | 0000786 | cellular_component | nucleosome |
D | 0002227 | biological_process | innate immune response in mucosa |
D | 0003677 | molecular_function | DNA binding |
D | 0005515 | molecular_function | protein binding |
D | 0005615 | cellular_component | extracellular space |
D | 0005634 | cellular_component | nucleus |
D | 0005654 | cellular_component | nucleoplasm |
D | 0005694 | cellular_component | chromosome |
D | 0005829 | cellular_component | cytosol |
D | 0006334 | biological_process | nucleosome assembly |
D | 0019731 | biological_process | antibacterial humoral response |
D | 0030527 | molecular_function | structural constituent of chromatin |
D | 0042742 | biological_process | defense response to bacterium |
D | 0046982 | molecular_function | protein heterodimerization activity |
D | 0050830 | biological_process | defense response to Gram-positive bacterium |
D | 0061844 | biological_process | antimicrobial humoral immune response mediated by antimicrobial peptide |
D | 0070062 | cellular_component | extracellular exosome |
E | 0000786 | cellular_component | nucleosome |
E | 0003677 | molecular_function | DNA binding |
E | 0005515 | molecular_function | protein binding |
E | 0005576 | cellular_component | extracellular region |
E | 0005634 | cellular_component | nucleus |
E | 0005654 | cellular_component | nucleoplasm |
E | 0005694 | cellular_component | chromosome |
E | 0006325 | biological_process | chromatin organization |
E | 0006334 | biological_process | nucleosome assembly |
E | 0010467 | biological_process | gene expression |
E | 0016020 | cellular_component | membrane |
E | 0030527 | molecular_function | structural constituent of chromatin |
E | 0032200 | biological_process | telomere organization |
E | 0032991 | cellular_component | protein-containing complex |
E | 0040029 | biological_process | epigenetic regulation of gene expression |
E | 0045296 | molecular_function | cadherin binding |
E | 0046982 | molecular_function | protein heterodimerization activity |
E | 0070062 | cellular_component | extracellular exosome |
F | 0000781 | cellular_component | chromosome, telomeric region |
F | 0000786 | cellular_component | nucleosome |
F | 0003677 | molecular_function | DNA binding |
F | 0003723 | molecular_function | RNA binding |
F | 0005515 | molecular_function | protein binding |
F | 0005576 | cellular_component | extracellular region |
F | 0005634 | cellular_component | nucleus |
F | 0005654 | cellular_component | nucleoplasm |
F | 0005694 | cellular_component | chromosome |
F | 0006325 | biological_process | chromatin organization |
F | 0006334 | biological_process | nucleosome assembly |
F | 0016020 | cellular_component | membrane |
F | 0030527 | molecular_function | structural constituent of chromatin |
F | 0032200 | biological_process | telomere organization |
F | 0032991 | cellular_component | protein-containing complex |
F | 0043505 | cellular_component | CENP-A containing nucleosome |
F | 0045653 | biological_process | negative regulation of megakaryocyte differentiation |
F | 0046982 | molecular_function | protein heterodimerization activity |
F | 0061644 | biological_process | protein localization to CENP-A containing chromatin |
F | 0070062 | cellular_component | extracellular exosome |
G | 0000786 | cellular_component | nucleosome |
G | 0003677 | molecular_function | DNA binding |
G | 0005634 | cellular_component | nucleus |
G | 0005694 | cellular_component | chromosome |
G | 0030527 | molecular_function | structural constituent of chromatin |
G | 0031507 | biological_process | heterochromatin formation |
G | 0046982 | molecular_function | protein heterodimerization activity |
G | 0070062 | cellular_component | extracellular exosome |
H | 0000786 | cellular_component | nucleosome |
H | 0002227 | biological_process | innate immune response in mucosa |
H | 0003677 | molecular_function | DNA binding |
H | 0005515 | molecular_function | protein binding |
H | 0005615 | cellular_component | extracellular space |
H | 0005634 | cellular_component | nucleus |
H | 0005654 | cellular_component | nucleoplasm |
H | 0005694 | cellular_component | chromosome |
H | 0005829 | cellular_component | cytosol |
H | 0006334 | biological_process | nucleosome assembly |
H | 0019731 | biological_process | antibacterial humoral response |
H | 0030527 | molecular_function | structural constituent of chromatin |
H | 0042742 | biological_process | defense response to bacterium |
H | 0046982 | molecular_function | protein heterodimerization activity |
H | 0050830 | biological_process | defense response to Gram-positive bacterium |
H | 0061844 | biological_process | antimicrobial humoral immune response mediated by antimicrobial peptide |
H | 0070062 | cellular_component | extracellular exosome |
O | 0000122 | biological_process | negative regulation of transcription by RNA polymerase II |
O | 0000785 | cellular_component | chromatin |
O | 0000976 | molecular_function | transcription cis-regulatory region binding |
O | 0000978 | molecular_function | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
O | 0000981 | molecular_function | DNA-binding transcription factor activity, RNA polymerase II-specific |
O | 0000987 | molecular_function | cis-regulatory region sequence-specific DNA binding |
O | 0001216 | molecular_function | DNA-binding transcription activator activity |
O | 0001217 | molecular_function | DNA-binding transcription repressor activity |
O | 0001227 | molecular_function | DNA-binding transcription repressor activity, RNA polymerase II-specific |
O | 0001228 | molecular_function | DNA-binding transcription activator activity, RNA polymerase II-specific |
O | 0001944 | biological_process | vasculature development |
O | 0002314 | biological_process | germinal center B cell differentiation |
O | 0002316 | biological_process | follicular B cell differentiation |
O | 0002320 | biological_process | lymphoid progenitor cell differentiation |
O | 0002327 | biological_process | immature B cell differentiation |
O | 0002357 | biological_process | defense response to tumor cell |
O | 0002572 | biological_process | pro-T cell differentiation |
O | 0002573 | biological_process | myeloid leukocyte differentiation |
O | 0003677 | molecular_function | DNA binding |
O | 0003682 | molecular_function | chromatin binding |
O | 0003700 | molecular_function | DNA-binding transcription factor activity |
O | 0003723 | molecular_function | RNA binding |
O | 0005515 | molecular_function | protein binding |
O | 0005634 | cellular_component | nucleus |
O | 0005654 | cellular_component | nucleoplasm |
O | 0005667 | cellular_component | transcription regulator complex |
O | 0006355 | biological_process | regulation of DNA-templated transcription |
O | 0006357 | biological_process | regulation of transcription by RNA polymerase II |
O | 0007179 | biological_process | transforming growth factor beta receptor signaling pathway |
O | 0010628 | biological_process | positive regulation of gene expression |
O | 0010629 | biological_process | negative regulation of gene expression |
O | 0030098 | biological_process | lymphocyte differentiation |
O | 0030154 | biological_process | cell differentiation |
O | 0030218 | biological_process | erythrocyte differentiation |
O | 0030225 | biological_process | macrophage differentiation |
O | 0030316 | biological_process | osteoclast differentiation |
O | 0030851 | biological_process | granulocyte differentiation |
O | 0031663 | biological_process | lipopolysaccharide-mediated signaling pathway |
O | 0035019 | biological_process | somatic stem cell population maintenance |
O | 0036462 | biological_process | TRAIL-activated apoptotic signaling pathway |
O | 0042826 | molecular_function | histone deacetylase binding |
O | 0043011 | biological_process | myeloid dendritic cell differentiation |
O | 0043124 | biological_process | negative regulation of canonical NF-kappaB signal transduction |
O | 0043314 | biological_process | negative regulation of neutrophil degranulation |
O | 0043565 | molecular_function | sequence-specific DNA binding |
O | 0045347 | biological_process | negative regulation of MHC class II biosynthetic process |
O | 0045471 | biological_process | response to ethanol |
O | 0045579 | biological_process | positive regulation of B cell differentiation |
O | 0045646 | biological_process | regulation of erythrocyte differentiation |
O | 0045815 | biological_process | transcription initiation-coupled chromatin remodeling |
O | 0045892 | biological_process | negative regulation of DNA-templated transcription |
O | 0045893 | biological_process | positive regulation of DNA-templated transcription |
O | 0045944 | biological_process | positive regulation of transcription by RNA polymerase II |
O | 0051525 | molecular_function | NFAT protein binding |
O | 0060033 | biological_process | anatomical structure regression |
O | 0061629 | molecular_function | RNA polymerase II-specific DNA-binding transcription factor binding |
O | 0070102 | biological_process | interleukin-6-mediated signaling pathway |
O | 0071361 | biological_process | cellular response to ethanol |
O | 0090402 | biological_process | oncogene-induced cell senescence |
O | 0097677 | molecular_function | STAT family protein binding |
O | 0098508 | biological_process | endothelial to hematopoietic transition |
O | 0120186 | biological_process | negative regulation of protein localization to chromatin |
O | 0140297 | molecular_function | DNA-binding transcription factor binding |
O | 0140311 | molecular_function | protein sequestering activity |
O | 1900745 | biological_process | positive regulation of p38MAPK cascade |
O | 1901223 | biological_process | negative regulation of non-canonical NF-kappaB signal transduction |
O | 1902262 | biological_process | apoptotic process involved in blood vessel morphogenesis |
O | 1902895 | biological_process | positive regulation of miRNA transcription |
O | 1904151 | biological_process | positive regulation of microglial cell mediated cytotoxicity |
O | 1904178 | biological_process | negative regulation of adipose tissue development |
O | 1904238 | biological_process | pericyte cell differentiation |
O | 1905036 | biological_process | positive regulation of antifungal innate immune response |
O | 1905453 | biological_process | regulation of myeloid progenitor cell differentiation |
O | 2000529 | biological_process | positive regulation of myeloid dendritic cell chemotaxis |
Functional Information from PROSITE/UniProt
site_id | PS00046 |
Number of Residues | 7 |
Details | HISTONE_H2A Histone H2A signature. AGLqFPV |
Chain | Residue | Details |
C | ALA21-VAL27 |
site_id | PS00047 |
Number of Residues | 5 |
Details | HISTONE_H4 Histone H4 signature. GAKRH |
Chain | Residue | Details |
B | GLY14-HIS18 |
site_id | PS00322 |
Number of Residues | 7 |
Details | HISTONE_H3_1 Histone H3 signature 1. KAPRKQL |
Chain | Residue | Details |
A | LYS14-LEU20 |
site_id | PS00345 |
Number of Residues | 9 |
Details | ETS_DOMAIN_1 Ets-domain signature 1. LYQFLLDLL |
Chain | Residue | Details |
O | LEU174-LEU182 |
site_id | PS00346 |
Number of Residues | 16 |
Details | ETS_DOMAIN_2 Ets-domain signature 2. RkkMtYQkMARALRnY |
Chain | Residue | Details |
O | ARG222-TYR237 |
site_id | PS00357 |
Number of Residues | 23 |
Details | HISTONE_H2B Histone H2B signature. REIQTavRlLLpGELaKHAVSEG |
Chain | Residue | Details |
D | ARG89-GLY111 |
site_id | PS00959 |
Number of Residues | 9 |
Details | HISTONE_H3_2 Histone H3 signature 2. PFqRLVREI |
Chain | Residue | Details |
A | PRO66-ILE74 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 1 |
Details | Modified residue: {"description":"N6-methyllysine","evidences":[{"source":"PubMed","id":"15983376","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI2 |
Number of Residues | 2 |
Details | Modified residue: {"description":"Phosphotyrosine","evidences":[{"source":"PubMed","id":"19783980","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI3 |
Number of Residues | 16 |
Details | Modified residue: {"description":"N6-succinyllysine; alternate","evidences":[{"source":"PubMed","id":"22389435","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI4 |
Number of Residues | 2 |
Details | Modified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"20850016","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI5 |
Number of Residues | 2 |
Details | Modified residue: {"description":"N6-methyllysine; alternate","evidences":[{"source":"PubMed","id":"16267050","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"17194708","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI6 |
Number of Residues | 2 |
Details | Modified residue: {"description":"N6-succinyllysine; alternate","evidences":[{"source":"PubMed","id":"22389435","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"29211711","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI7 |
Number of Residues | 2 |
Details | Modified residue: {"description":"Phosphothreonine","evidences":[{"source":"PubMed","id":"20850016","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI8 |
Number of Residues | 2 |
Details | Modified residue: {"description":"Phosphoserine","evidences":[{"source":"UniProtKB","id":"P84243","evidenceCode":"ECO:0000250"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI9 |
Number of Residues | 2 |
Details | Modified residue: {"description":"Phosphothreonine","evidences":[{"source":"UniProtKB","id":"Q71DI3","evidenceCode":"ECO:0000250"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI10 |
Number of Residues | 7 |
Details | Modified residue: {"description":"N6-glutaryllysine; alternate","evidences":[{"source":"PubMed","id":"31542297","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI11 |
Number of Residues | 2 |
Details | Modified residue: {"description":"N6-succinyllysine; alternate","evidences":[{"source":"PubMed","id":"22389435","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"27436229","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI12 |
Number of Residues | 1 |
Details | Modified residue: {"description":"N6-methyllysine; alternate","evidences":[{"source":"PubMed","id":"12086618","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"15964846","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"17967882","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"27338793","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI13 |
Number of Residues | 2 |
Details | Modified residue: {"description":"N6-propionyllysine; alternate","evidences":[{"source":"PubMed","id":"17267393","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI14 |
Number of Residues | 2 |
Details | Modified residue: {"description":"Phosphoserine; by PAK2","evidences":[{"source":"PubMed","id":"21724829","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"17081983","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"18669648","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"19690332","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"20068231","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"21406692","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"23186163","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"24275569","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI15 |
Number of Residues | 2 |
Details | Modified residue: {"description":"Phosphotyrosine","evidences":[{"source":"PubMed","id":"15592455","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"20068231","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI16 |
Number of Residues | 2 |
Details | Modified residue: {"description":"N6-succinyllysine; alternate","evidences":[{"source":"UniProtKB","id":"P62806","evidenceCode":"ECO:0000250"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI17 |
Number of Residues | 2 |
Details | Modified residue: {"description":"Phosphothreonine","evidences":[{"source":"UniProtKB","id":"P62806","evidenceCode":"ECO:0000250"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI18 |
Number of Residues | 2 |
Details | Modified residue: {"description":"Phosphotyrosine","evidences":[{"source":"PubMed","id":"24275569","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI19 |
Number of Residues | 5 |
Details | Cross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2); alternate","evidences":[{"source":"PubMed","id":"28112733","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI20 |
Number of Residues | 4 |
Details | Cross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin); alternate","evidences":[{"source":"PubMed","id":"19818714","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI21 |
Number of Residues | 2 |
Details | Cross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in UFM1); alternate","evidences":[{"source":"PubMed","id":"30886146","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI22 |
Number of Residues | 2 |
Details | Modified residue: {"description":"N6-(beta-hydroxybutyryl)lysine; alternate","evidences":[{"source":"PubMed","id":"27105115","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI23 |
Number of Residues | 2 |
Details | Modified residue: {"description":"N6-crotonyllysine; alternate","evidences":[{"source":"PubMed","id":"21925322","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI24 |
Number of Residues | 4 |
Details | Modified residue: {"description":"N6-(2-hydroxyisobutyryl)lysine","evidences":[{"source":"PubMed","id":"24681537","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI25 |
Number of Residues | 2 |
Details | Modified residue: {"description":"N6-glutaryllysine","evidences":[{"source":"PubMed","id":"31542297","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI26 |
Number of Residues | 2 |
Details | Modified residue: {"description":"N5-methylglutamine","evidences":[{"source":"PubMed","id":"24352239","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI27 |
Number of Residues | 2 |
Details | Cross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin); alternate","evidences":[{"source":"PubMed","id":"22713238","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"22980979","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI28 |
Number of Residues | 3 |
Details | Cross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","evidences":[{"source":"PubMed","id":"22713238","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"22980979","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI29 |
Number of Residues | 2 |
Details | Cross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin); alternate","evidences":[{"source":"PubMed","id":"15386022","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"16359901","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"16702407","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"25470042","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI30 |
Number of Residues | 2 |
Details | Modified residue: {"description":"PolyADP-ribosyl glutamic acid","evidences":[{"source":"UniProtKB","id":"Q64475","evidenceCode":"ECO:0000250"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI31 |
Number of Residues | 2 |
Details | Modified residue: {"description":"Phosphoserine; by AMPK","evidences":[{"source":"UniProtKB","id":"Q64524","evidenceCode":"ECO:0000250"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI32 |
Number of Residues | 4 |
Details | Modified residue: {"description":"N6-lactoyllysine; alternate","evidences":[{"source":"PubMed","id":"31645732","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI33 |
Number of Residues | 4 |
Details | Modified residue: {"description":"N6-methyllysine; alternate","evidences":[{"source":"PubMed","id":"16627869","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI34 |
Number of Residues | 2 |
Details | Modified residue: {"description":"N6-(2-hydroxyisobutyryl)lysine; alternate","evidences":[{"source":"PubMed","id":"24681537","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI35 |
Number of Residues | 2 |
Details | Modified residue: {"description":"Dimethylated arginine","evidences":[{"source":"UniProtKB","id":"Q96A08","evidenceCode":"ECO:0000250"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI36 |
Number of Residues | 4 |
Details | Modified residue: {"description":"Omega-N-methylarginine","evidences":[{"source":"UniProtKB","id":"Q96A08","evidenceCode":"ECO:0000250"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI37 |
Number of Residues | 2 |
Details | Modified residue: {"description":"Phosphothreonine","evidences":[{"source":"UniProtKB","id":"Q00729","evidenceCode":"ECO:0000250"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI38 |
Number of Residues | 2 |
Details | Glycosylation: {"description":"O-linked (GlcNAc) serine","evidences":[{"source":"UniProtKB","id":"P62807","evidenceCode":"ECO:0000250"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI39 |
Number of Residues | 2 |
Details | Cross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin); alternate","evidences":[{"source":"PubMed","id":"21726816","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI40 |
Number of Residues | 4 |
Details | Cross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin); alternate","evidences":[{"source":"PubMed","id":"16307923","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"16627869","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"16713563","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI41 |
Number of Residues | 83 |
Details | DNA binding: {"description":"ETS","evidences":[{"source":"PROSITE-ProRule","id":"PRU00237","evidenceCode":"ECO:0000255"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI42 |
Number of Residues | 1 |
Details | Binding site: {"description":"forms a salt bridge with the phosphate backbone of the opposite strand downstream of the GGAA core sequence","evidences":[{"source":"PubMed","id":"8602247","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI43 |
Number of Residues | 2 |
Details | Binding site: {"description":"contacts bases in the GGAA sequence in the major groove","evidences":[{"source":"PubMed","id":"8602247","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1PUE","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI44 |
Number of Residues | 1 |
Details | Binding site: {"description":"contacts the phosphate backbone of the GGAA sequence in the minor groove upstream","evidences":[{"source":"PubMed","id":"8602247","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |