8EUF

Class2 of the INO80-Nucleosome complex

This is a non-PDB format compatible entry.

Functional Information from GO Data

Chain	GOid	namespace	contents
Q	0000166	molecular_function	nucleotide binding
Q	0000722	biological_process	telomere maintenance via recombination
Q	0000775	cellular_component	chromosome, centromeric region
Q	0000781	cellular_component	chromosome, telomeric region
Q	0003677	molecular_function	DNA binding
Q	0005515	molecular_function	protein binding
Q	0005524	molecular_function	ATP binding
Q	0005634	cellular_component	nucleus
Q	0006281	biological_process	DNA repair
Q	0006338	biological_process	chromatin remodeling
Q	0006351	biological_process	DNA-templated transcription
Q	0006355	biological_process	regulation of DNA-templated transcription
Q	0006357	biological_process	regulation of transcription by RNA polymerase II
Q	0006366	biological_process	transcription by RNA polymerase II
Q	0006974	biological_process	DNA damage response
Q	0010557	biological_process	positive regulation of macromolecule biosynthetic process
Q	0016787	molecular_function	hydrolase activity
Q	0016887	molecular_function	ATP hydrolysis activity
Q	0031011	cellular_component	Ino80 complex
Q	0031509	biological_process	subtelomeric heterochromatin formation
Q	0032006	biological_process	regulation of TOR signaling
Q	0033554	biological_process	cellular response to stress
Q	0040029	biological_process	epigenetic regulation of gene expression
Q	0042393	molecular_function	histone binding
Q	0045944	biological_process	positive regulation of transcription by RNA polymerase II
Q	0051276	biological_process	chromosome organization
Q	0140658	molecular_function	ATP-dependent chromatin remodeler activity
R	0005634	cellular_component	nucleus
R	0005737	cellular_component	cytoplasm
R	0006281	biological_process	DNA repair
R	0006338	biological_process	chromatin remodeling
R	0006355	biological_process	regulation of DNA-templated transcription
R	0030234	molecular_function	enzyme regulator activity
R	0031011	cellular_component	Ino80 complex
S	0003674	molecular_function	molecular_function
S	0005634	cellular_component	nucleus
S	0006281	biological_process	DNA repair
S	0006338	biological_process	chromatin remodeling
S	0006355	biological_process	regulation of DNA-templated transcription
S	0008150	biological_process	biological_process
S	0031011	cellular_component	Ino80 complex
T	0000166	molecular_function	nucleotide binding
T	0000492	biological_process	box C/D snoRNP assembly
T	0000785	cellular_component	chromatin
T	0000812	cellular_component	Swr1 complex
T	0003678	molecular_function	DNA helicase activity
T	0004386	molecular_function	helicase activity
T	0005515	molecular_function	protein binding
T	0005524	molecular_function	ATP binding
T	0005634	cellular_component	nucleus
T	0006281	biological_process	DNA repair
T	0006325	biological_process	chromatin organization
T	0006338	biological_process	chromatin remodeling
T	0006355	biological_process	regulation of DNA-templated transcription
T	0006357	biological_process	regulation of transcription by RNA polymerase II
T	0006974	biological_process	DNA damage response
T	0008094	molecular_function	ATP-dependent activity, acting on DNA
T	0016787	molecular_function	hydrolase activity
T	0016887	molecular_function	ATP hydrolysis activity
T	0031011	cellular_component	Ino80 complex
T	0035267	cellular_component	NuA4 histone acetyltransferase complex
T	0043138	molecular_function	3'-5' DNA helicase activity
T	0043139	molecular_function	5'-3' DNA helicase activity
T	0050821	biological_process	protein stabilization
T	0097255	cellular_component	R2TP complex
T	0110078	cellular_component	TTT Hsp90 cochaperone complex
U	0000166	molecular_function	nucleotide binding
U	0000492	biological_process	box C/D snoRNP assembly
U	0000785	cellular_component	chromatin
U	0000812	cellular_component	Swr1 complex
U	0003678	molecular_function	DNA helicase activity
U	0004386	molecular_function	helicase activity
U	0005515	molecular_function	protein binding
U	0005524	molecular_function	ATP binding
U	0005634	cellular_component	nucleus
U	0005654	cellular_component	nucleoplasm
U	0006281	biological_process	DNA repair
U	0006325	biological_process	chromatin organization
U	0006338	biological_process	chromatin remodeling
U	0006355	biological_process	regulation of DNA-templated transcription
U	0006357	biological_process	regulation of transcription by RNA polymerase II
U	0006364	biological_process	rRNA processing
U	0006974	biological_process	DNA damage response
U	0008094	molecular_function	ATP-dependent activity, acting on DNA
U	0016787	molecular_function	hydrolase activity
U	0016887	molecular_function	ATP hydrolysis activity
U	0031011	cellular_component	Ino80 complex
U	0035267	cellular_component	NuA4 histone acetyltransferase complex
U	0043138	molecular_function	3'-5' DNA helicase activity
U	0043139	molecular_function	5'-3' DNA helicase activity
U	0050821	biological_process	protein stabilization
U	0097255	cellular_component	R2TP complex
U	0110078	cellular_component	TTT Hsp90 cochaperone complex
V	0000166	molecular_function	nucleotide binding
V	0000492	biological_process	box C/D snoRNP assembly
V	0000785	cellular_component	chromatin
V	0000812	cellular_component	Swr1 complex
V	0003678	molecular_function	DNA helicase activity
V	0004386	molecular_function	helicase activity
V	0005515	molecular_function	protein binding
V	0005524	molecular_function	ATP binding
V	0005634	cellular_component	nucleus
V	0006281	biological_process	DNA repair
V	0006325	biological_process	chromatin organization
V	0006338	biological_process	chromatin remodeling
V	0006355	biological_process	regulation of DNA-templated transcription
V	0006357	biological_process	regulation of transcription by RNA polymerase II
V	0006974	biological_process	DNA damage response
V	0008094	molecular_function	ATP-dependent activity, acting on DNA
V	0016787	molecular_function	hydrolase activity
V	0016887	molecular_function	ATP hydrolysis activity
V	0031011	cellular_component	Ino80 complex
V	0035267	cellular_component	NuA4 histone acetyltransferase complex
V	0043138	molecular_function	3'-5' DNA helicase activity
V	0043139	molecular_function	5'-3' DNA helicase activity
V	0050821	biological_process	protein stabilization
V	0097255	cellular_component	R2TP complex
V	0110078	cellular_component	TTT Hsp90 cochaperone complex
W	0000166	molecular_function	nucleotide binding
W	0000492	biological_process	box C/D snoRNP assembly
W	0000785	cellular_component	chromatin
W	0000812	cellular_component	Swr1 complex
W	0003678	molecular_function	DNA helicase activity
W	0004386	molecular_function	helicase activity
W	0005515	molecular_function	protein binding
W	0005524	molecular_function	ATP binding
W	0005634	cellular_component	nucleus
W	0005654	cellular_component	nucleoplasm
W	0006281	biological_process	DNA repair
W	0006325	biological_process	chromatin organization
W	0006338	biological_process	chromatin remodeling
W	0006355	biological_process	regulation of DNA-templated transcription
W	0006357	biological_process	regulation of transcription by RNA polymerase II
W	0006364	biological_process	rRNA processing
W	0006974	biological_process	DNA damage response
W	0008094	molecular_function	ATP-dependent activity, acting on DNA
W	0016787	molecular_function	hydrolase activity
W	0016887	molecular_function	ATP hydrolysis activity
W	0031011	cellular_component	Ino80 complex
W	0035267	cellular_component	NuA4 histone acetyltransferase complex
W	0043138	molecular_function	3'-5' DNA helicase activity
W	0043139	molecular_function	5'-3' DNA helicase activity
W	0050821	biological_process	protein stabilization
W	0097255	cellular_component	R2TP complex
W	0110078	cellular_component	TTT Hsp90 cochaperone complex
X	0000166	molecular_function	nucleotide binding
X	0000492	biological_process	box C/D snoRNP assembly
X	0000785	cellular_component	chromatin
X	0000812	cellular_component	Swr1 complex
X	0003678	molecular_function	DNA helicase activity
X	0004386	molecular_function	helicase activity
X	0005515	molecular_function	protein binding
X	0005524	molecular_function	ATP binding
X	0005634	cellular_component	nucleus
X	0006281	biological_process	DNA repair
X	0006325	biological_process	chromatin organization
X	0006338	biological_process	chromatin remodeling
X	0006355	biological_process	regulation of DNA-templated transcription
X	0006357	biological_process	regulation of transcription by RNA polymerase II
X	0006974	biological_process	DNA damage response
X	0008094	molecular_function	ATP-dependent activity, acting on DNA
X	0016787	molecular_function	hydrolase activity
X	0016887	molecular_function	ATP hydrolysis activity
X	0031011	cellular_component	Ino80 complex
X	0035267	cellular_component	NuA4 histone acetyltransferase complex
X	0043138	molecular_function	3'-5' DNA helicase activity
X	0043139	molecular_function	5'-3' DNA helicase activity
X	0050821	biological_process	protein stabilization
X	0097255	cellular_component	R2TP complex
X	0110078	cellular_component	TTT Hsp90 cochaperone complex
Y	0000166	molecular_function	nucleotide binding
Y	0000492	biological_process	box C/D snoRNP assembly
Y	0000785	cellular_component	chromatin
Y	0000812	cellular_component	Swr1 complex
Y	0003678	molecular_function	DNA helicase activity
Y	0004386	molecular_function	helicase activity
Y	0005515	molecular_function	protein binding
Y	0005524	molecular_function	ATP binding
Y	0005634	cellular_component	nucleus
Y	0005654	cellular_component	nucleoplasm
Y	0006281	biological_process	DNA repair
Y	0006325	biological_process	chromatin organization
Y	0006338	biological_process	chromatin remodeling
Y	0006355	biological_process	regulation of DNA-templated transcription
Y	0006357	biological_process	regulation of transcription by RNA polymerase II
Y	0006364	biological_process	rRNA processing
Y	0006974	biological_process	DNA damage response
Y	0008094	molecular_function	ATP-dependent activity, acting on DNA
Y	0016787	molecular_function	hydrolase activity
Y	0016887	molecular_function	ATP hydrolysis activity
Y	0031011	cellular_component	Ino80 complex
Y	0035267	cellular_component	NuA4 histone acetyltransferase complex
Y	0043138	molecular_function	3'-5' DNA helicase activity
Y	0043139	molecular_function	5'-3' DNA helicase activity
Y	0050821	biological_process	protein stabilization
Y	0097255	cellular_component	R2TP complex
Y	0110078	cellular_component	TTT Hsp90 cochaperone complex
Z	0003674	molecular_function	molecular_function
Z	0003677	molecular_function	DNA binding
Z	0005634	cellular_component	nucleus
Z	0006281	biological_process	DNA repair
Z	0006325	biological_process	chromatin organization
Z	0006338	biological_process	chromatin remodeling
Z	0006355	biological_process	regulation of DNA-templated transcription
Z	0006974	biological_process	DNA damage response
Z	0008150	biological_process	biological_process
Z	0031011	cellular_component	Ino80 complex

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	1
Details	Modified residue: {"description":"Phosphothreonine","evidences":[{"source":"PubMed","id":"18407956","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI2
Number of Residues	2
Details	Cross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","evidences":[{"source":"PubMed","id":"22106047","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI3
Number of Residues	42
Details	Binding site: {"evidences":[{"evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

---