8DZK

Dbr1 in complex with 5-mer cleavage product

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000375	biological_process	RNA splicing, via transesterification reactions
A	0000398	biological_process	mRNA splicing, via spliceosome
A	0003723	molecular_function	RNA binding
A	0005506	molecular_function	iron ion binding
A	0005634	cellular_component	nucleus
A	0006397	biological_process	mRNA processing
A	0008270	molecular_function	zinc ion binding
A	0008419	molecular_function	RNA lariat debranching enzyme activity
A	0016787	molecular_function	hydrolase activity
A	0030145	molecular_function	manganese ion binding
A	0046872	molecular_function	metal ion binding
A	0048471	cellular_component	perinuclear region of cytoplasm
B	0000375	biological_process	RNA splicing, via transesterification reactions
B	0000398	biological_process	mRNA splicing, via spliceosome
B	0003723	molecular_function	RNA binding
B	0005506	molecular_function	iron ion binding
B	0005634	cellular_component	nucleus
B	0006397	biological_process	mRNA processing
B	0008270	molecular_function	zinc ion binding
B	0008419	molecular_function	RNA lariat debranching enzyme activity
B	0016787	molecular_function	hydrolase activity
B	0030145	molecular_function	manganese ion binding
B	0046872	molecular_function	metal ion binding
B	0048471	cellular_component	perinuclear region of cytoplasm
C	0000375	biological_process	RNA splicing, via transesterification reactions
C	0000398	biological_process	mRNA splicing, via spliceosome
C	0003723	molecular_function	RNA binding
C	0005506	molecular_function	iron ion binding
C	0005634	cellular_component	nucleus
C	0006397	biological_process	mRNA processing
C	0008270	molecular_function	zinc ion binding
C	0008419	molecular_function	RNA lariat debranching enzyme activity
C	0016787	molecular_function	hydrolase activity
C	0030145	molecular_function	manganese ion binding
C	0046872	molecular_function	metal ion binding
C	0048471	cellular_component	perinuclear region of cytoplasm
D	0000375	biological_process	RNA splicing, via transesterification reactions
D	0000398	biological_process	mRNA splicing, via spliceosome
D	0003723	molecular_function	RNA binding
D	0005506	molecular_function	iron ion binding
D	0005634	cellular_component	nucleus
D	0006397	biological_process	mRNA processing
D	0008270	molecular_function	zinc ion binding
D	0008419	molecular_function	RNA lariat debranching enzyme activity
D	0016787	molecular_function	hydrolase activity
D	0030145	molecular_function	manganese ion binding
D	0046872	molecular_function	metal ion binding
D	0048471	cellular_component	perinuclear region of cytoplasm
E	0000375	biological_process	RNA splicing, via transesterification reactions
E	0000398	biological_process	mRNA splicing, via spliceosome
E	0003723	molecular_function	RNA binding
E	0005506	molecular_function	iron ion binding
E	0005634	cellular_component	nucleus
E	0006397	biological_process	mRNA processing
E	0008270	molecular_function	zinc ion binding
E	0008419	molecular_function	RNA lariat debranching enzyme activity
E	0016787	molecular_function	hydrolase activity
E	0030145	molecular_function	manganese ion binding
E	0046872	molecular_function	metal ion binding
E	0048471	cellular_component	perinuclear region of cytoplasm

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	140
Details	Region: {"description":"Lariat recognition loop","evidences":[{"source":"PubMed","id":"27930312","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

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site_id	SWS_FT_FI2
Number of Residues	10
Details	Binding site: {"evidences":[{"source":"PubMed","id":"27930312","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"28504306","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"5K73","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5K77","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5K78","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5UKI","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

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site_id	SWS_FT_FI3
Number of Residues	10
Details	Binding site: {"evidences":[{"source":"PubMed","id":"25123664","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"27930312","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"28504306","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4PEF","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4PEG","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4PEH","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4PEI","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5K73","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5K77","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5K78","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5UKI","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI4
Number of Residues	15
Details	Binding site: {"evidences":[{"source":"PubMed","id":"25123664","evidenceCode":"ECO:0000269"},{"source":"Reference","evidenceCode":"ECO:0000269","citation":{"citationType":"submission","publicationDate":"AUG-2022","submissionDatabase":"PDB data bank","title":"Dbr1 in complex with 5-mer cleavage product.","authors":["Clark N.E.","Taylor A.B."]}},{"source":"PDB","id":"4PEH","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8DZK","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

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site_id	SWS_FT_FI5
Number of Residues	5
Details	Binding site: {"evidences":[{"source":"PubMed","id":"25123664","evidenceCode":"ECO:0000269"},{"source":"Reference","evidenceCode":"ECO:0000269","citation":{"citationType":"submission","publicationDate":"AUG-2022","submissionDatabase":"PDB data bank","title":"Dbr1 in complex with 5-mer cleavage product.","authors":["Clark N.E.","Taylor A.B."]}},{"source":"PDB","id":"4PEG","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4PEI","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8DZK","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

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site_id	SWS_FT_FI6
Number of Residues	5
Details	Binding site: {"evidences":[{"source":"PubMed","id":"25123664","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4PEG","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4PEI","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI7
Number of Residues	10
Details	Binding site: {"evidences":[{"source":"PubMed","id":"25123664","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"27930312","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4PEG","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4PEI","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5K77","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5K78","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

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site_id	SWS_FT_FI8
Number of Residues	5
Details	Binding site: {"evidences":[{"source":"PubMed","id":"25123664","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"27930312","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4PEG","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4PEH","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4PEI","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5K77","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5K78","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

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site_id	SWS_FT_FI9
Number of Residues	10
Details	Binding site: {"evidences":[{"source":"PubMed","id":"27930312","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4PEG","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4PEI","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

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