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8DEF

Cryo-EM Structure of Western Equine Encephalitis Virus VLP in complex with SKW24 fab

Functional Information from GO Data
ChainGOidnamespacecontents
A0004252molecular_functionserine-type endopeptidase activity
A0019028cellular_componentviral capsid
A0055036cellular_componentvirion membrane
B0005198molecular_functionstructural molecule activity
B0019028cellular_componentviral capsid
F0004252molecular_functionserine-type endopeptidase activity
F0019028cellular_componentviral capsid
F0055036cellular_componentvirion membrane
G0005198molecular_functionstructural molecule activity
G0019028cellular_componentviral capsid
J0004252molecular_functionserine-type endopeptidase activity
J0019028cellular_componentviral capsid
J0055036cellular_componentvirion membrane
K0005198molecular_functionstructural molecule activity
K0019028cellular_componentviral capsid
Functional Information from PROSITE/UniProt
site_idPS00178
Number of Residues12
DetailsAA_TRNA_LIGASE_I Aminoacyl-transfer RNA synthetases class-I signature. PgqTArITCGGI
ChainResidueDetails
TPRO14-ILE25

site_idPS00290
Number of Residues7
DetailsIG_MHC Immunoglobulins and major histocompatibility complex proteins signature. YVCNVNH
ChainResidueDetails
STYR205-HIS211
TTYR194-HIS200

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues60
DetailsTRANSMEM: Helical => ECO:0000255
ChainResidueDetails
BILE372-ILE392
GILE372-ILE392
KILE372-ILE392

site_idSWS_FT_FI2
Number of Residues9
DetailsLIPID: S-palmitoyl cysteine; by host => ECO:0000250
ChainResidueDetails
BCYS399
BCYS419
BCYS420
GCYS399
GCYS419
GCYS420
KCYS399
KCYS419
KCYS420

site_idSWS_FT_FI3
Number of Residues6
DetailsCARBOHYD: N-linked (GlcNAc...) asparagine; by host => ECO:0000255
ChainResidueDetails
BASN199
BASN321
GASN199
GASN321
KASN199
KASN321

site_idSWS_FT_FI4
Number of Residues6
DetailsCARBOHYD: N-linked (GlcNAc...) asparagine; by host => ECO:0000255
ChainResidueDetails
AASN139
AASN245
FASN139
FASN245
JASN139
JASN245

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PDB entries from 2024-07-24

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