Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

8D8J

Yeast mitochondrial small subunit assembly intermediate (State 1)

Functional Information from GO Data

Chain	GOid	namespace	contents
0	0003735	molecular_function	structural constituent of ribosome
0	0005739	cellular_component	mitochondrion
0	0005763	cellular_component	mitochondrial small ribosomal subunit
0	0006412	biological_process	translation
0	0008168	molecular_function	methyltransferase activity
0	0032543	biological_process	mitochondrial translation
0	0051536	molecular_function	iron-sulfur cluster binding
0	0051539	molecular_function	4 iron, 4 sulfur cluster binding
0	0180026	biological_process	mitochondrial small ribosomal subunit assembly
2	0003735	molecular_function	structural constituent of ribosome
2	0005739	cellular_component	mitochondrion
2	0005743	cellular_component	mitochondrial inner membrane
2	0005763	cellular_component	mitochondrial small ribosomal subunit
2	0032543	biological_process	mitochondrial translation
5	0003735	molecular_function	structural constituent of ribosome
5	0005739	cellular_component	mitochondrion
5	0005743	cellular_component	mitochondrial inner membrane
5	0005763	cellular_component	mitochondrial small ribosomal subunit
5	0032543	biological_process	mitochondrial translation
6	0003735	molecular_function	structural constituent of ribosome
6	0005739	cellular_component	mitochondrion
6	0005743	cellular_component	mitochondrial inner membrane
6	0005763	cellular_component	mitochondrial small ribosomal subunit
6	0032543	biological_process	mitochondrial translation
d	0000963	biological_process	mitochondrial RNA processing
d	0005739	cellular_component	mitochondrion
d	0006396	biological_process	RNA processing
d	0007005	biological_process	mitochondrion organization
d	0008380	biological_process	RNA splicing
d	0016072	biological_process	rRNA metabolic process
d	0019843	molecular_function	rRNA binding
d	2000234	biological_process	positive regulation of rRNA processing
D	0003723	molecular_function	RNA binding
D	0003735	molecular_function	structural constituent of ribosome
D	0005739	cellular_component	mitochondrion
D	0005743	cellular_component	mitochondrial inner membrane
D	0005763	cellular_component	mitochondrial small ribosomal subunit
D	0019843	molecular_function	rRNA binding
D	0032543	biological_process	mitochondrial translation
D	0042274	biological_process	ribosomal small subunit biogenesis
D	1990904	cellular_component	ribonucleoprotein complex
E	0003723	molecular_function	RNA binding
E	0003735	molecular_function	structural constituent of ribosome
E	0005739	cellular_component	mitochondrion
E	0005743	cellular_component	mitochondrial inner membrane
E	0005763	cellular_component	mitochondrial small ribosomal subunit
E	0005840	cellular_component	ribosome
E	0006412	biological_process	translation
E	0032543	biological_process	mitochondrial translation
F	0003735	molecular_function	structural constituent of ribosome
F	0005737	cellular_component	cytoplasm
F	0005739	cellular_component	mitochondrion
F	0005743	cellular_component	mitochondrial inner membrane
F	0005763	cellular_component	mitochondrial small ribosomal subunit
F	0005840	cellular_component	ribosome
F	0006412	biological_process	translation
F	0019843	molecular_function	rRNA binding
F	0032543	biological_process	mitochondrial translation
F	0070181	molecular_function	small ribosomal subunit rRNA binding
H	0003735	molecular_function	structural constituent of ribosome
H	0005739	cellular_component	mitochondrion
H	0005743	cellular_component	mitochondrial inner membrane
H	0005763	cellular_component	mitochondrial small ribosomal subunit
H	0005840	cellular_component	ribosome
H	0006412	biological_process	translation
H	0032543	biological_process	mitochondrial translation
L	0003735	molecular_function	structural constituent of ribosome
L	0005739	cellular_component	mitochondrion
L	0005743	cellular_component	mitochondrial inner membrane
L	0005763	cellular_component	mitochondrial small ribosomal subunit
L	0005840	cellular_component	ribosome
L	0006412	biological_process	translation
L	0015935	cellular_component	small ribosomal subunit
L	0032543	biological_process	mitochondrial translation
O	0003735	molecular_function	structural constituent of ribosome
O	0005737	cellular_component	cytoplasm
O	0005739	cellular_component	mitochondrion
O	0005743	cellular_component	mitochondrial inner membrane
O	0005763	cellular_component	mitochondrial small ribosomal subunit
O	0005840	cellular_component	ribosome
O	0006412	biological_process	translation
O	0032543	biological_process	mitochondrial translation
P	0003735	molecular_function	structural constituent of ribosome
P	0005737	cellular_component	cytoplasm
P	0005739	cellular_component	mitochondrion
P	0005743	cellular_component	mitochondrial inner membrane
P	0005763	cellular_component	mitochondrial small ribosomal subunit
P	0005840	cellular_component	ribosome
P	0006412	biological_process	translation
P	0032543	biological_process	mitochondrial translation
Q	0003735	molecular_function	structural constituent of ribosome
Q	0005739	cellular_component	mitochondrion
Q	0005743	cellular_component	mitochondrial inner membrane
Q	0005763	cellular_component	mitochondrial small ribosomal subunit
Q	0005840	cellular_component	ribosome
Q	0006412	biological_process	translation
Q	0032543	biological_process	mitochondrial translation
R	0003735	molecular_function	structural constituent of ribosome
R	0005739	cellular_component	mitochondrion
R	0005743	cellular_component	mitochondrial inner membrane
R	0005763	cellular_component	mitochondrial small ribosomal subunit
R	0005840	cellular_component	ribosome
R	0006412	biological_process	translation
R	0032543	biological_process	mitochondrial translation
R	0070181	molecular_function	small ribosomal subunit rRNA binding
V	0003735	molecular_function	structural constituent of ribosome
V	0005739	cellular_component	mitochondrion
V	0005743	cellular_component	mitochondrial inner membrane
V	0005763	cellular_component	mitochondrial small ribosomal subunit
V	0032543	biological_process	mitochondrial translation

Functional Information from PROSITE/UniProt

site_id	PS00055
Number of Residues	8
Details	RIBOSOMAL_S12 Ribosomal protein S12 signature. KkPNSAqR

Chain	Residue	Details
L	LYS71-ARG78

site_id	PS00362
Number of Residues	31
Details	RIBOSOMAL_S15 Ribosomal protein S15 signature. ManHIkehRkDfaNtrnLriLvqqrqaIlrY

Chain	Residue	Details
O	MET188-TYR218

site_id	PS00585
Number of Residues	34
Details	RIBOSOMAL_S5 Ribosomal protein S5 signature. GKiasFyAlvVVGDkn.GmVGlGegksreEMsk.AI

Chain	Residue	Details
E	GLY161-ILE194

site_id	PS00632
Number of Residues	25
Details	RIBOSOMAL_S4 Ribosomal protein S4 signature. LEkRLdfaLFRamfAsSvrqARqFI

Chain	Residue	Details
D	LEU101-ILE125

site_id	PS00687
Number of Residues	8
Details	ALDEHYDE_DEHYDR_GLU Aldehyde dehydrogenases glutamic acid active site. AELSGLNT

Chain	Residue	Details
O	ALA113-THR120

site_id	PS00732
Number of Residues	10
Details	RIBOSOMAL_S16 Ribosomal protein S16 signature. VrIRLARFGR

Chain	Residue	Details
P	VAL6-ARG15

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	4
Details	Binding site: {"evidences":[{"source":"PubMed","id":"36482135","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"38199006","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"8D8J","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8D8K","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8D8L","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8OM2","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

site_id	SWS_FT_FI2
Number of Residues	34
Details	Repeat: {"description":"PPR 1","evidences":[{"source":"PROSITE-ProRule","id":"PRU00708","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

site_id	SWS_FT_FI3
Number of Residues	34
Details	Repeat: {"description":"PPR 2","evidences":[{"source":"PROSITE-ProRule","id":"PRU00708","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

site_id	SWS_FT_FI4
Number of Residues	69
Details	Domain: {"description":"S4 RNA-binding","evidences":[{"source":"PROSITE-ProRule","id":"PRU00182","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

site_id	SWS_FT_FI5
Number of Residues	64
Details	Domain: {"description":"S5 DRBM","evidences":[{"source":"PROSITE-ProRule","id":"PRU00268","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)