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8CGL

Cryo-EM structure of RNase J from Helicobacter pylori

Functional Information from GO Data
ChainGOidnamespacecontents
A0001558biological_processregulation of cell growth
A0003723molecular_functionRNA binding
A0004519molecular_functionendonuclease activity
A0004521molecular_functionRNA endonuclease activity
A0004527molecular_functionexonuclease activity
A0004534molecular_function5'-3' RNA exonuclease activity
A0005515molecular_functionprotein binding
A0005737cellular_componentcytoplasm
A0006364biological_processrRNA processing
A0006396biological_processRNA processing
A0006397biological_processmRNA processing
A0008270molecular_functionzinc ion binding
A0042802molecular_functionidentical protein binding
A0042803molecular_functionprotein homodimerization activity
A0046872molecular_functionmetal ion binding
A0051289biological_processprotein homotetramerization
B0001558biological_processregulation of cell growth
B0003723molecular_functionRNA binding
B0004519molecular_functionendonuclease activity
B0004521molecular_functionRNA endonuclease activity
B0004527molecular_functionexonuclease activity
B0004534molecular_function5'-3' RNA exonuclease activity
B0005515molecular_functionprotein binding
B0005737cellular_componentcytoplasm
B0006364biological_processrRNA processing
B0006396biological_processRNA processing
B0006397biological_processmRNA processing
B0008270molecular_functionzinc ion binding
B0042802molecular_functionidentical protein binding
B0042803molecular_functionprotein homodimerization activity
B0046872molecular_functionmetal ion binding
B0051289biological_processprotein homotetramerization
C0001558biological_processregulation of cell growth
C0003723molecular_functionRNA binding
C0004519molecular_functionendonuclease activity
C0004521molecular_functionRNA endonuclease activity
C0004527molecular_functionexonuclease activity
C0004534molecular_function5'-3' RNA exonuclease activity
C0005515molecular_functionprotein binding
C0005737cellular_componentcytoplasm
C0006364biological_processrRNA processing
C0006396biological_processRNA processing
C0006397biological_processmRNA processing
C0008270molecular_functionzinc ion binding
C0042802molecular_functionidentical protein binding
C0042803molecular_functionprotein homodimerization activity
C0046872molecular_functionmetal ion binding
C0051289biological_processprotein homotetramerization
D0001558biological_processregulation of cell growth
D0003723molecular_functionRNA binding
D0004519molecular_functionendonuclease activity
D0004521molecular_functionRNA endonuclease activity
D0004527molecular_functionexonuclease activity
D0004534molecular_function5'-3' RNA exonuclease activity
D0005515molecular_functionprotein binding
D0005737cellular_componentcytoplasm
D0006364biological_processrRNA processing
D0006396biological_processRNA processing
D0006397biological_processmRNA processing
D0008270molecular_functionzinc ion binding
D0042802molecular_functionidentical protein binding
D0042803molecular_functionprotein homodimerization activity
D0046872molecular_functionmetal ion binding
D0051289biological_processprotein homotetramerization
Functional Information from PROSITE/UniProt
site_idPS01292
Number of Residues29
DetailsUPF0036 Uncharacterized protein family UPF0036 signature. HvSGHAaqeEqklMlrlikPkffLPvHGE
ChainResidueDetails
AHIS500-GLU528

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues32
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01491
ChainResidueDetails
AHIS208
BHIS210
BASP212
BHIS213
BHIS277
BASP299
BHIS500
BHIS526
CHIS208
CHIS210
CASP212
AHIS210
CHIS213
CHIS277
CASP299
CHIS500
CHIS526
DHIS208
DHIS210
DASP212
DHIS213
DHIS277
AASP212
DASP299
DHIS500
DHIS526
AHIS213
AHIS277
AASP299
AHIS500
AHIS526
BHIS208

site_idSWS_FT_FI2
Number of Residues36
DetailsMOD_RES: N6-acetyllysine => ECO:0000269|PubMed:38057323
ChainResidueDetails
ALYS134
BLYS134
BLYS140
BLYS323
BLYS337
BLYS397
BLYS511
BLYS547
BLYS634
BLYS649
CLYS134
ALYS140
CLYS140
CLYS323
CLYS337
CLYS397
CLYS511
CLYS547
CLYS634
CLYS649
DLYS134
DLYS140
ALYS323
DLYS323
DLYS337
DLYS397
DLYS511
DLYS547
DLYS634
DLYS649
ALYS337
ALYS397
ALYS511
ALYS547
ALYS634
ALYS649

224004

PDB entries from 2024-08-21

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