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8BM3

H207A mutant of E. coli PgpB, a PAP2 type phosphatidyl glycerol phosphate and C55-PP phosphatase, in complex with farnesyl pyrophosphate

Functional Information from GO Data
ChainGOidnamespacecontents
A0000810molecular_functiondiacylglycerol diphosphate phosphatase activity
A0005886cellular_componentplasma membrane
A0006629biological_processlipid metabolic process
A0006655biological_processphosphatidylglycerol biosynthetic process
A0008195molecular_functionphosphatidate phosphatase activity
A0008962molecular_functionphosphatidylglycerophosphatase activity
A0009252biological_processpeptidoglycan biosynthetic process
A0009279cellular_componentcell outer membrane
A0009395biological_processphospholipid catabolic process
A0016042biological_processlipid catabolic process
A0016787molecular_functionhydrolase activity
A0046474biological_processglycerophospholipid biosynthetic process
A0050380molecular_functionundecaprenyl-diphosphatase activity
B0000810molecular_functiondiacylglycerol diphosphate phosphatase activity
B0005886cellular_componentplasma membrane
B0006629biological_processlipid metabolic process
B0006655biological_processphosphatidylglycerol biosynthetic process
B0008195molecular_functionphosphatidate phosphatase activity
B0008962molecular_functionphosphatidylglycerophosphatase activity
B0009252biological_processpeptidoglycan biosynthetic process
B0009279cellular_componentcell outer membrane
B0009395biological_processphospholipid catabolic process
B0016042biological_processlipid catabolic process
B0016787molecular_functionhydrolase activity
B0046474biological_processglycerophospholipid biosynthetic process
B0050380molecular_functionundecaprenyl-diphosphatase activity
C0000810molecular_functiondiacylglycerol diphosphate phosphatase activity
C0005886cellular_componentplasma membrane
C0006629biological_processlipid metabolic process
C0006655biological_processphosphatidylglycerol biosynthetic process
C0008195molecular_functionphosphatidate phosphatase activity
C0008962molecular_functionphosphatidylglycerophosphatase activity
C0009252biological_processpeptidoglycan biosynthetic process
C0009279cellular_componentcell outer membrane
C0009395biological_processphospholipid catabolic process
C0016042biological_processlipid catabolic process
C0016787molecular_functionhydrolase activity
C0046474biological_processglycerophospholipid biosynthetic process
C0050380molecular_functionundecaprenyl-diphosphatase activity
D0000810molecular_functiondiacylglycerol diphosphate phosphatase activity
D0005886cellular_componentplasma membrane
D0006629biological_processlipid metabolic process
D0006655biological_processphosphatidylglycerol biosynthetic process
D0008195molecular_functionphosphatidate phosphatase activity
D0008962molecular_functionphosphatidylglycerophosphatase activity
D0009252biological_processpeptidoglycan biosynthetic process
D0009279cellular_componentcell outer membrane
D0009395biological_processphospholipid catabolic process
D0016042biological_processlipid catabolic process
D0016787molecular_functionhydrolase activity
D0046474biological_processglycerophospholipid biosynthetic process
D0050380molecular_functionundecaprenyl-diphosphatase activity
Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues444
DetailsTransmembrane: {"description":"Helical","evidences":[{"source":"PubMed","id":"24821770","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues400
DetailsTopological domain: {"description":"Periplasmic","evidences":[{"source":"PubMed","id":"24821770","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues36
DetailsTopological domain: {"description":"Cytoplasmic","evidences":[{"source":"PubMed","id":"24821770","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues32
DetailsRegion: {"description":"Phosphatase sequence motif I","evidences":[{"evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues12
DetailsRegion: {"description":"Phosphatase sequence motif II","evidences":[{"evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues44
DetailsRegion: {"description":"Phosphatase sequence motif III","evidences":[{"evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI7
Number of Residues4
DetailsActive site: {"description":"Proton donor; for a subset of substrates","evidences":[{"source":"PubMed","id":"27405756","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI8
Number of Residues4
DetailsActive site: {"description":"Nucleophile","evidences":[{"source":"PubMed","id":"27405756","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI9
Number of Residues4
DetailsSite: {"description":"Stabilizes the active site histidine for nucleophilic attack","evidences":[{"source":"PubMed","id":"27405756","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

246333

PDB entries from 2025-12-17

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