8BD3

Cryo-EM structure of the Photosystem II - LHCII supercomplex from Chlorella ohadi

This is a non-PDB format compatible entry.

Functional Information from GO Data

Chain	GOid	namespace	contents
0	0009765	biological_process	photosynthesis, light harvesting
0	0016020	cellular_component	membrane
1	0009765	biological_process	photosynthesis, light harvesting
1	0016020	cellular_component	membrane
2	0009765	biological_process	photosynthesis, light harvesting
2	0016020	cellular_component	membrane
3	0009765	biological_process	photosynthesis, light harvesting
3	0016020	cellular_component	membrane
4	0009765	biological_process	photosynthesis, light harvesting
4	0016020	cellular_component	membrane
5	0009765	biological_process	photosynthesis, light harvesting
5	0016020	cellular_component	membrane
6	0009765	biological_process	photosynthesis, light harvesting
6	0016020	cellular_component	membrane
7	0009765	biological_process	photosynthesis, light harvesting
7	0016020	cellular_component	membrane
8	0009765	biological_process	photosynthesis, light harvesting
8	0016020	cellular_component	membrane
9	0009765	biological_process	photosynthesis, light harvesting
9	0016020	cellular_component	membrane
A	0005506	molecular_function	iron ion binding
A	0009055	molecular_function	electron transfer activity
A	0009523	cellular_component	photosystem II
A	0009535	cellular_component	chloroplast thylakoid membrane
A	0009635	biological_process	response to herbicide
A	0009772	biological_process	photosynthetic electron transport in photosystem II
A	0010242	molecular_function	oxygen evolving activity
A	0015979	biological_process	photosynthesis
A	0016020	cellular_component	membrane
A	0016168	molecular_function	chlorophyll binding
A	0016491	molecular_function	oxidoreductase activity
A	0016682	molecular_function	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
A	0019684	biological_process	photosynthesis, light reaction
A	0046872	molecular_function	metal ion binding
B	0009521	cellular_component	photosystem
B	0009523	cellular_component	photosystem II
B	0009535	cellular_component	chloroplast thylakoid membrane
B	0009767	biological_process	photosynthetic electron transport chain
B	0009772	biological_process	photosynthetic electron transport in photosystem II
B	0015979	biological_process	photosynthesis
B	0016020	cellular_component	membrane
B	0016168	molecular_function	chlorophyll binding
B	0019684	biological_process	photosynthesis, light reaction
C	0005737	cellular_component	cytoplasm
C	0009521	cellular_component	photosystem
C	0009523	cellular_component	photosystem II
C	0009535	cellular_component	chloroplast thylakoid membrane
C	0009767	biological_process	photosynthetic electron transport chain
C	0009772	biological_process	photosynthetic electron transport in photosystem II
C	0015979	biological_process	photosynthesis
C	0016020	cellular_component	membrane
C	0016168	molecular_function	chlorophyll binding
C	0019684	biological_process	photosynthesis, light reaction
C	0046872	molecular_function	metal ion binding
D	0005506	molecular_function	iron ion binding
D	0005737	cellular_component	cytoplasm
D	0009055	molecular_function	electron transfer activity
D	0009523	cellular_component	photosystem II
D	0009535	cellular_component	chloroplast thylakoid membrane
D	0009772	biological_process	photosynthetic electron transport in photosystem II
D	0010242	molecular_function	oxygen evolving activity
D	0015979	biological_process	photosynthesis
D	0016020	cellular_component	membrane
D	0016168	molecular_function	chlorophyll binding
D	0016491	molecular_function	oxidoreductase activity
D	0019684	biological_process	photosynthesis, light reaction
D	0046872	molecular_function	metal ion binding
E	0005506	molecular_function	iron ion binding
E	0009055	molecular_function	electron transfer activity
E	0009523	cellular_component	photosystem II
E	0009535	cellular_component	chloroplast thylakoid membrane
E	0009536	cellular_component	plastid
E	0009539	cellular_component	photosystem II reaction center
E	0009767	biological_process	photosynthetic electron transport chain
E	0015979	biological_process	photosynthesis
E	0016020	cellular_component	membrane
E	0019684	biological_process	photosynthesis, light reaction
E	0020037	molecular_function	heme binding
E	0046872	molecular_function	metal ion binding
F	0005506	molecular_function	iron ion binding
F	0009055	molecular_function	electron transfer activity
F	0009523	cellular_component	photosystem II
F	0009535	cellular_component	chloroplast thylakoid membrane
F	0009536	cellular_component	plastid
F	0009539	cellular_component	photosystem II reaction center
F	0009767	biological_process	photosynthetic electron transport chain
F	0015979	biological_process	photosynthesis
F	0016020	cellular_component	membrane
F	0019684	biological_process	photosynthesis, light reaction
F	0020037	molecular_function	heme binding
F	0046872	molecular_function	metal ion binding
F1	0005509	molecular_function	calcium ion binding
F1	0009523	cellular_component	photosystem II
F1	0009654	cellular_component	photosystem II oxygen evolving complex
F1	0015979	biological_process	photosynthesis
F1	0019898	cellular_component	extrinsic component of membrane
G	0009765	biological_process	photosynthesis, light harvesting
G	0016020	cellular_component	membrane
H	0009523	cellular_component	photosystem II
H	0015979	biological_process	photosynthesis
H	0016020	cellular_component	membrane
H	0042301	molecular_function	phosphate ion binding
H	0050821	biological_process	protein stabilization
I	0009523	cellular_component	photosystem II
I	0009539	cellular_component	photosystem II reaction center
I	0015979	biological_process	photosynthesis
I	0016020	cellular_component	membrane
J	0009523	cellular_component	photosystem II
J	0009535	cellular_component	chloroplast thylakoid membrane
J	0009539	cellular_component	photosystem II reaction center
J	0015979	biological_process	photosynthesis
J	0016020	cellular_component	membrane
K	0009523	cellular_component	photosystem II
K	0009539	cellular_component	photosystem II reaction center
K	0015979	biological_process	photosynthesis
L	0005737	cellular_component	cytoplasm
L	0009523	cellular_component	photosystem II
L	0009535	cellular_component	chloroplast thylakoid membrane
L	0009539	cellular_component	photosystem II reaction center
L	0015979	biological_process	photosynthesis
L	0016020	cellular_component	membrane
M	0005737	cellular_component	cytoplasm
M	0009523	cellular_component	photosystem II
M	0009535	cellular_component	chloroplast thylakoid membrane
M	0015979	biological_process	photosynthesis
M	0016020	cellular_component	membrane
M	0019684	biological_process	photosynthesis, light reaction
N	0009765	biological_process	photosynthesis, light harvesting
N	0016020	cellular_component	membrane
O	0009654	cellular_component	photosystem II oxygen evolving complex
O	0010207	biological_process	photosystem II assembly
O	0010242	molecular_function	oxygen evolving activity
O	0042549	biological_process	photosystem II stabilization
P1	0009523	cellular_component	photosystem II
P1	0009654	cellular_component	photosystem II oxygen evolving complex
P1	0015979	biological_process	photosynthesis
P1	0042651	cellular_component	thylakoid membrane
Q1	0009523	cellular_component	photosystem II
Q1	0015979	biological_process	photosynthesis
Q1	0016020	cellular_component	membrane
Q1	0030145	molecular_function	manganese ion binding
R	0009765	biological_process	photosynthesis, light harvesting
R	0016020	cellular_component	membrane
S	0009765	biological_process	photosynthesis, light harvesting
S	0016020	cellular_component	membrane
T	0005737	cellular_component	cytoplasm
T	0009523	cellular_component	photosystem II
T	0009535	cellular_component	chloroplast thylakoid membrane
T	0009539	cellular_component	photosystem II reaction center
T	0015979	biological_process	photosynthesis
T	0016020	cellular_component	membrane
U	0005509	molecular_function	calcium ion binding
U	0009523	cellular_component	photosystem II
U	0009654	cellular_component	photosystem II oxygen evolving complex
U	0015979	biological_process	photosynthesis
U	0019898	cellular_component	extrinsic component of membrane
V	0009523	cellular_component	photosystem II
V	0009535	cellular_component	chloroplast thylakoid membrane
V	0015979	biological_process	photosynthesis
V	0016020	cellular_component	membrane
W	0009507	cellular_component	chloroplast
W	0009523	cellular_component	photosystem II
W	0015979	biological_process	photosynthesis
X	0009523	cellular_component	photosystem II
X	0015979	biological_process	photosynthesis
X	0016020	cellular_component	membrane
Y	0009765	biological_process	photosynthesis, light harvesting
Y	0016020	cellular_component	membrane
Z	0009523	cellular_component	photosystem II
Z	0009535	cellular_component	chloroplast thylakoid membrane
Z	0009539	cellular_component	photosystem II reaction center
Z	0015979	biological_process	photosynthesis
Z	0016020	cellular_component	membrane
Z	0042549	biological_process	photosystem II stabilization
a	0005506	molecular_function	iron ion binding
a	0009055	molecular_function	electron transfer activity
a	0009523	cellular_component	photosystem II
a	0009535	cellular_component	chloroplast thylakoid membrane
a	0009635	biological_process	response to herbicide
a	0009772	biological_process	photosynthetic electron transport in photosystem II
a	0010242	molecular_function	oxygen evolving activity
a	0015979	biological_process	photosynthesis
a	0016020	cellular_component	membrane
a	0016168	molecular_function	chlorophyll binding
a	0016491	molecular_function	oxidoreductase activity
a	0016682	molecular_function	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
a	0019684	biological_process	photosynthesis, light reaction
a	0046872	molecular_function	metal ion binding
b	0009521	cellular_component	photosystem
b	0009523	cellular_component	photosystem II
b	0009535	cellular_component	chloroplast thylakoid membrane
b	0009767	biological_process	photosynthetic electron transport chain
b	0009772	biological_process	photosynthetic electron transport in photosystem II
b	0015979	biological_process	photosynthesis
b	0016020	cellular_component	membrane
b	0016168	molecular_function	chlorophyll binding
b	0019684	biological_process	photosynthesis, light reaction
c	0005737	cellular_component	cytoplasm
c	0009521	cellular_component	photosystem
c	0009523	cellular_component	photosystem II
c	0009535	cellular_component	chloroplast thylakoid membrane
c	0009767	biological_process	photosynthetic electron transport chain
c	0009772	biological_process	photosynthetic electron transport in photosystem II
c	0015979	biological_process	photosynthesis
c	0016020	cellular_component	membrane
c	0016168	molecular_function	chlorophyll binding
c	0019684	biological_process	photosynthesis, light reaction
c	0046872	molecular_function	metal ion binding
d	0005506	molecular_function	iron ion binding
d	0005737	cellular_component	cytoplasm
d	0009055	molecular_function	electron transfer activity
d	0009523	cellular_component	photosystem II
d	0009535	cellular_component	chloroplast thylakoid membrane
d	0009772	biological_process	photosynthetic electron transport in photosystem II
d	0010242	molecular_function	oxygen evolving activity
d	0015979	biological_process	photosynthesis
d	0016020	cellular_component	membrane
d	0016168	molecular_function	chlorophyll binding
d	0016491	molecular_function	oxidoreductase activity
d	0019684	biological_process	photosynthesis, light reaction
d	0046872	molecular_function	metal ion binding
e	0005506	molecular_function	iron ion binding
e	0009055	molecular_function	electron transfer activity
e	0009523	cellular_component	photosystem II
e	0009535	cellular_component	chloroplast thylakoid membrane
e	0009536	cellular_component	plastid
e	0009539	cellular_component	photosystem II reaction center
e	0009767	biological_process	photosynthetic electron transport chain
e	0015979	biological_process	photosynthesis
e	0016020	cellular_component	membrane
e	0019684	biological_process	photosynthesis, light reaction
e	0020037	molecular_function	heme binding
e	0046872	molecular_function	metal ion binding
f	0005506	molecular_function	iron ion binding
f	0009055	molecular_function	electron transfer activity
f	0009523	cellular_component	photosystem II
f	0009535	cellular_component	chloroplast thylakoid membrane
f	0009536	cellular_component	plastid
f	0009539	cellular_component	photosystem II reaction center
f	0009767	biological_process	photosynthetic electron transport chain
f	0015979	biological_process	photosynthesis
f	0016020	cellular_component	membrane
f	0019684	biological_process	photosynthesis, light reaction
f	0020037	molecular_function	heme binding
f	0046872	molecular_function	metal ion binding
f1	0005509	molecular_function	calcium ion binding
f1	0009523	cellular_component	photosystem II
f1	0009654	cellular_component	photosystem II oxygen evolving complex
f1	0015979	biological_process	photosynthesis
f1	0019898	cellular_component	extrinsic component of membrane
g	0009765	biological_process	photosynthesis, light harvesting
g	0016020	cellular_component	membrane
h	0009523	cellular_component	photosystem II
h	0015979	biological_process	photosynthesis
h	0016020	cellular_component	membrane
h	0042301	molecular_function	phosphate ion binding
h	0050821	biological_process	protein stabilization
i	0009523	cellular_component	photosystem II
i	0009539	cellular_component	photosystem II reaction center
i	0015979	biological_process	photosynthesis
i	0016020	cellular_component	membrane
j	0009523	cellular_component	photosystem II
j	0009535	cellular_component	chloroplast thylakoid membrane
j	0009539	cellular_component	photosystem II reaction center
j	0015979	biological_process	photosynthesis
j	0016020	cellular_component	membrane
k	0009523	cellular_component	photosystem II
k	0009539	cellular_component	photosystem II reaction center
k	0015979	biological_process	photosynthesis
l	0005737	cellular_component	cytoplasm
l	0009523	cellular_component	photosystem II
l	0009535	cellular_component	chloroplast thylakoid membrane
l	0009539	cellular_component	photosystem II reaction center
l	0015979	biological_process	photosynthesis
l	0016020	cellular_component	membrane
m	0005737	cellular_component	cytoplasm
m	0009523	cellular_component	photosystem II
m	0009535	cellular_component	chloroplast thylakoid membrane
m	0015979	biological_process	photosynthesis
m	0016020	cellular_component	membrane
m	0019684	biological_process	photosynthesis, light reaction
n	0009765	biological_process	photosynthesis, light harvesting
n	0016020	cellular_component	membrane
o	0009654	cellular_component	photosystem II oxygen evolving complex
o	0010207	biological_process	photosystem II assembly
o	0010242	molecular_function	oxygen evolving activity
o	0042549	biological_process	photosystem II stabilization
p	0009765	biological_process	photosynthesis, light harvesting
p	0016020	cellular_component	membrane
p1	0009523	cellular_component	photosystem II
p1	0009654	cellular_component	photosystem II oxygen evolving complex
p1	0015979	biological_process	photosynthesis
p1	0042651	cellular_component	thylakoid membrane
q	0009765	biological_process	photosynthesis, light harvesting
q	0016020	cellular_component	membrane
q1	0009523	cellular_component	photosystem II
q1	0015979	biological_process	photosynthesis
q1	0016020	cellular_component	membrane
q1	0030145	molecular_function	manganese ion binding
r	0009765	biological_process	photosynthesis, light harvesting
r	0016020	cellular_component	membrane
s	0009765	biological_process	photosynthesis, light harvesting
s	0016020	cellular_component	membrane
t	0005737	cellular_component	cytoplasm
t	0009523	cellular_component	photosystem II
t	0009535	cellular_component	chloroplast thylakoid membrane
t	0009539	cellular_component	photosystem II reaction center
t	0015979	biological_process	photosynthesis
t	0016020	cellular_component	membrane
u	0005509	molecular_function	calcium ion binding
u	0009523	cellular_component	photosystem II
u	0009654	cellular_component	photosystem II oxygen evolving complex
u	0015979	biological_process	photosynthesis
u	0019898	cellular_component	extrinsic component of membrane
v	0009523	cellular_component	photosystem II
v	0009535	cellular_component	chloroplast thylakoid membrane
v	0015979	biological_process	photosynthesis
v	0016020	cellular_component	membrane
w	0009507	cellular_component	chloroplast
w	0009523	cellular_component	photosystem II
w	0015979	biological_process	photosynthesis
x	0009523	cellular_component	photosystem II
x	0015979	biological_process	photosynthesis
x	0016020	cellular_component	membrane
y	0009765	biological_process	photosynthesis, light harvesting
y	0016020	cellular_component	membrane
z	0009523	cellular_component	photosystem II
z	0009535	cellular_component	chloroplast thylakoid membrane
z	0009539	cellular_component	photosystem II reaction center
z	0015979	biological_process	photosynthesis
z	0016020	cellular_component	membrane
z	0042549	biological_process	photosystem II stabilization

Functional Information from PROSITE/UniProt

site_id	PS00244
Number of Residues	27
Details	REACTION_CENTER Photosynthetic reaction center proteins signature. NilmhPfHmlGvagvfggslfsAmHGS

Chain	Residue	Details
A	ASN191-SER217
D	ASN190-ALA216

---

site_id	PS00537
Number of Residues	15
Details	CYTOCHROME_B559 Cytochrome b559 subunits heme-binding site signature. IfTVRWlaVHALAVP

Chain	Residue	Details
F	ILE14-PRO28
E	LEU14-PRO28

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI15
Number of Residues	32
Details	Transmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_00643","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI16
Number of Residues	2
Details	Binding site: {"description":"axial binding residue","evidences":[{"source":"HAMAP-Rule","id":"MF_00643","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI20
Number of Residues	40
Details	Transmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_00441","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI21
Number of Residues	40
Details	Transmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_01317","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI22
Number of Residues	40
Details	Transmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_00808","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---