| Chain | GOid | namespace | contents |
| A | 0000902 | biological_process | cell morphogenesis |
| A | 0001701 | biological_process | in utero embryonic development |
| A | 0001750 | cellular_component | photoreceptor outer segment |
| A | 0005515 | molecular_function | protein binding |
| A | 0005886 | cellular_component | plasma membrane |
| A | 0005929 | cellular_component | cilium |
| A | 0007224 | biological_process | smoothened signaling pathway |
| A | 0008406 | biological_process | gonad development |
| A | 0021904 | biological_process | dorsal/ventral neural tube patterning |
| A | 0030030 | biological_process | cell projection organization |
| A | 0030326 | biological_process | embryonic limb morphogenesis |
| A | 0030991 | cellular_component | intraciliary transport particle A |
| A | 0031076 | biological_process | embryonic camera-type eye development |
| A | 0031514 | cellular_component | motile cilium |
| A | 0032391 | cellular_component | photoreceptor connecting cilium |
| A | 0035721 | biological_process | intraciliary retrograde transport |
| A | 0042471 | biological_process | ear morphogenesis |
| A | 0043113 | biological_process | receptor clustering |
| A | 0044782 | biological_process | cilium organization |
| A | 0048701 | biological_process | embryonic cranial skeleton morphogenesis |
| A | 0050877 | biological_process | nervous system process |
| A | 0055123 | biological_process | digestive system development |
| A | 0060271 | biological_process | cilium assembly |
| A | 0060831 | biological_process | smoothened signaling pathway involved in dorsal/ventral neural tube patterning |
| A | 0061055 | biological_process | myotome development |
| A | 0065003 | biological_process | protein-containing complex assembly |
| A | 0072657 | biological_process | protein localization to membrane |
| A | 0097542 | cellular_component | ciliary tip |
| A | 0097730 | cellular_component | non-motile cilium |
| A | 1903441 | biological_process | protein localization to ciliary membrane |
| B | 0005515 | molecular_function | protein binding |
| B | 0005654 | cellular_component | nucleoplasm |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0005739 | cellular_component | mitochondrion |
| B | 0005813 | cellular_component | centrosome |
| B | 0005814 | cellular_component | centriole |
| B | 0005929 | cellular_component | cilium |
| B | 0005930 | cellular_component | axoneme |
| B | 0007368 | biological_process | determination of left/right symmetry |
| B | 0007507 | biological_process | heart development |
| B | 0008589 | biological_process | regulation of smoothened signaling pathway |
| B | 0021532 | biological_process | neural tube patterning |
| B | 0030030 | biological_process | cell projection organization |
| B | 0030991 | cellular_component | intraciliary transport particle A |
| B | 0031076 | biological_process | embryonic camera-type eye development |
| B | 0032391 | cellular_component | photoreceptor connecting cilium |
| B | 0035108 | biological_process | limb morphogenesis |
| B | 0035721 | biological_process | intraciliary retrograde transport |
| B | 0035845 | biological_process | photoreceptor cell outer segment organization |
| B | 0036064 | cellular_component | ciliary basal body |
| B | 0042073 | biological_process | intraciliary transport |
| B | 0042733 | biological_process | embryonic digit morphogenesis |
| B | 0048701 | biological_process | embryonic cranial skeleton morphogenesis |
| B | 0060271 | biological_process | cilium assembly |
| B | 0061512 | biological_process | protein localization to cilium |
| B | 0097542 | cellular_component | ciliary tip |
| B | 0097730 | cellular_component | non-motile cilium |
| B | 0120199 | cellular_component | cone photoreceptor outer segment |
| B | 1902017 | biological_process | regulation of cilium assembly |
| B | 1905515 | biological_process | non-motile cilium assembly |
| B | 1990403 | biological_process | embryonic brain development |
| C | 0001843 | biological_process | neural tube closure |
| C | 0005515 | molecular_function | protein binding |
| C | 0005654 | cellular_component | nucleoplasm |
| C | 0005829 | cellular_component | cytosol |
| C | 0005929 | cellular_component | cilium |
| C | 0010172 | biological_process | embryonic body morphogenesis |
| C | 0016020 | cellular_component | membrane |
| C | 0021513 | biological_process | spinal cord dorsal/ventral patterning |
| C | 0030030 | biological_process | cell projection organization |
| C | 0030991 | cellular_component | intraciliary transport particle A |
| C | 0031965 | cellular_component | nuclear membrane |
| C | 0032391 | cellular_component | photoreceptor connecting cilium |
| C | 0035050 | biological_process | embryonic heart tube development |
| C | 0035115 | biological_process | embryonic forelimb morphogenesis |
| C | 0035556 | biological_process | intracellular signal transduction |
| C | 0035720 | biological_process | intraciliary anterograde transport |
| C | 0035721 | biological_process | intraciliary retrograde transport |
| C | 0035869 | cellular_component | ciliary transition zone |
| C | 0036064 | cellular_component | ciliary basal body |
| C | 0042073 | biological_process | intraciliary transport |
| C | 0045879 | biological_process | negative regulation of smoothened signaling pathway |
| C | 0048593 | biological_process | camera-type eye morphogenesis |
| C | 0060173 | biological_process | limb development |
| C | 0060271 | biological_process | cilium assembly |
| C | 0060971 | biological_process | embryonic heart tube left/right pattern formation |
| C | 0061512 | biological_process | protein localization to cilium |
| C | 0072594 | biological_process | establishment of protein localization to organelle |
| C | 0097225 | cellular_component | sperm midpiece |
| C | 0097228 | cellular_component | sperm principal piece |
| C | 0097542 | cellular_component | ciliary tip |
| C | 0097730 | cellular_component | non-motile cilium |
| C | 1905515 | biological_process | non-motile cilium assembly |
