| Chain | GOid | namespace | contents |
| C | 0001843 | biological_process | neural tube closure |
| C | 0005515 | molecular_function | protein binding |
| C | 0005654 | cellular_component | nucleoplasm |
| C | 0005829 | cellular_component | cytosol |
| C | 0005929 | cellular_component | cilium |
| C | 0010172 | biological_process | embryonic body morphogenesis |
| C | 0016020 | cellular_component | membrane |
| C | 0021513 | biological_process | spinal cord dorsal/ventral patterning |
| C | 0030030 | biological_process | cell projection organization |
| C | 0030991 | cellular_component | intraciliary transport particle A |
| C | 0031965 | cellular_component | nuclear membrane |
| C | 0032391 | cellular_component | photoreceptor connecting cilium |
| C | 0035050 | biological_process | embryonic heart tube development |
| C | 0035115 | biological_process | embryonic forelimb morphogenesis |
| C | 0035556 | biological_process | intracellular signal transduction |
| C | 0035720 | biological_process | intraciliary anterograde transport |
| C | 0035721 | biological_process | intraciliary retrograde transport |
| C | 0035869 | cellular_component | ciliary transition zone |
| C | 0036064 | cellular_component | ciliary basal body |
| C | 0042073 | biological_process | intraciliary transport |
| C | 0045879 | biological_process | negative regulation of smoothened signaling pathway |
| C | 0048593 | biological_process | camera-type eye morphogenesis |
| C | 0060173 | biological_process | limb development |
| C | 0060271 | biological_process | cilium assembly |
| C | 0060971 | biological_process | embryonic heart tube left/right pattern formation |
| C | 0061512 | biological_process | protein localization to cilium |
| C | 0072594 | biological_process | establishment of protein localization to organelle |
| C | 0097225 | cellular_component | sperm midpiece |
| C | 0097228 | cellular_component | sperm principal piece |
| C | 0097542 | cellular_component | ciliary tip |
| C | 0097730 | cellular_component | non-motile cilium |
| C | 1905515 | biological_process | non-motile cilium assembly |
| D | 0003682 | molecular_function | chromatin binding |
| D | 0003824 | molecular_function | catalytic activity |
| D | 0003908 | molecular_function | methylated-DNA-[protein]-cysteine S-methyltransferase activity |
| D | 0005515 | molecular_function | protein binding |
| D | 0005929 | cellular_component | cilium |
| D | 0005930 | cellular_component | axoneme |
| D | 0006281 | biological_process | DNA repair |
| D | 0006357 | biological_process | regulation of transcription by RNA polymerase II |
| D | 0007224 | biological_process | smoothened signaling pathway |
| D | 0008589 | biological_process | regulation of smoothened signaling pathway |
| D | 0010468 | biological_process | regulation of gene expression |
| D | 0010628 | biological_process | positive regulation of gene expression |
| D | 0021549 | biological_process | cerebellum development |
| D | 0021591 | biological_process | ventricular system development |
| D | 0021702 | biological_process | cerebellar Purkinje cell differentiation |
| D | 0021798 | biological_process | forebrain dorsal/ventral pattern formation |
| D | 0030900 | biological_process | forebrain development |
| D | 0030991 | cellular_component | intraciliary transport particle A |
| D | 0035721 | biological_process | intraciliary retrograde transport |
| D | 0060020 | biological_process | Bergmann glial cell differentiation |
| D | 0060271 | biological_process | cilium assembly |
| D | 0061512 | biological_process | protein localization to cilium |
| D | 0090263 | biological_process | positive regulation of canonical Wnt signaling pathway |
| D | 0097499 | biological_process | protein localization to non-motile cilium |
| D | 0097542 | cellular_component | ciliary tip |
| D | 1903999 | biological_process | negative regulation of eating behavior |
| D | 1905799 | biological_process | regulation of intraciliary retrograde transport |
| E | 0005515 | molecular_function | protein binding |
| E | 0005813 | cellular_component | centrosome |
| E | 0005929 | cellular_component | cilium |
| E | 0005930 | cellular_component | axoneme |
| E | 0030030 | biological_process | cell projection organization |
| E | 0030991 | cellular_component | intraciliary transport particle A |
| E | 0035721 | biological_process | intraciliary retrograde transport |
| E | 0036064 | cellular_component | ciliary basal body |
| E | 0042073 | biological_process | intraciliary transport |
| E | 0060271 | biological_process | cilium assembly |
| E | 0061512 | biological_process | protein localization to cilium |
| E | 0097542 | cellular_component | ciliary tip |
| E | 1990830 | biological_process | cellular response to leukemia inhibitory factor |
| F | 0005515 | molecular_function | protein binding |
| F | 0005814 | cellular_component | centriole |
| F | 0005856 | cellular_component | cytoskeleton |
| F | 0005929 | cellular_component | cilium |
| F | 0015630 | cellular_component | microtubule cytoskeleton |
| F | 0030030 | biological_process | cell projection organization |
| F | 0030991 | cellular_component | intraciliary transport particle A |
| F | 0033011 | cellular_component | perinuclear theca |
| F | 0034451 | cellular_component | centriolar satellite |
| F | 0035721 | biological_process | intraciliary retrograde transport |
| F | 0036064 | cellular_component | ciliary basal body |
| F | 0045171 | cellular_component | intercellular bridge |
| F | 0060271 | biological_process | cilium assembly |
| F | 0072686 | cellular_component | mitotic spindle |
| F | 0097228 | cellular_component | sperm principal piece |
| F | 0097229 | cellular_component | sperm end piece |
| F | 0097542 | cellular_component | ciliary tip |
