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8B3G

C(N)RL4CSA-UVSSA-E2-ubiquitin complex.

Functional Information from GO Data
ChainGOidnamespacecontents
a0000012biological_processsingle strand break repair
a0000109cellular_componentnucleotide-excision repair complex
a0000209biological_processprotein polyubiquitination
a0005515molecular_functionprotein binding
a0005634cellular_componentnucleus
a0005654cellular_componentnucleoplasm
a0005694cellular_componentchromosome
a0006281biological_processDNA repair
a0006283biological_processtranscription-coupled nucleotide-excision repair
a0006289biological_processnucleotide-excision repair
a0006974biological_processDNA damage response
a0006979biological_processresponse to oxidative stress
a0009411biological_processresponse to UV
a0010996biological_processresponse to auditory stimulus
a0016363cellular_componentnuclear matrix
a0016567biological_processprotein ubiquitination
a0031464cellular_componentCul4A-RING E3 ubiquitin ligase complex
a0032991cellular_componentprotein-containing complex
a0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
a0043204cellular_componentperikaryon
a0051865biological_processprotein autoubiquitination
a0080008cellular_componentCul4-RING E3 ubiquitin ligase complex
a0090262biological_processregulation of transcription-coupled nucleotide-excision repair
a0090734cellular_componentsite of DNA damage
a0097680biological_processdouble-strand break repair via classical nonhomologous end joining
a1990756molecular_functionubiquitin-like ligase-substrate adaptor activity
c0000993molecular_functionRNA polymerase II complex binding
c0005515molecular_functionprotein binding
c0005634cellular_componentnucleus
c0005654cellular_componentnucleoplasm
c0005694cellular_componentchromosome
c0006281biological_processDNA repair
c0006283biological_processtranscription-coupled nucleotide-excision repair
c0006325biological_processchromatin organization
c0006974biological_processDNA damage response
c0008270molecular_functionzinc ion binding
c0009411biological_processresponse to UV
c0016567biological_processprotein ubiquitination
c0046872molecular_functionmetal ion binding
c0090734cellular_componentsite of DNA damage
c0140463molecular_functionchromatin-protein adaptor activity
c0140870molecular_functionRNA polymerase inhibitor activity
d0000781cellular_componentchromosome, telomeric region
d0003676molecular_functionnucleic acid binding
d0003677molecular_functionDNA binding
d0003684molecular_functiondamaged DNA binding
d0005515molecular_functionprotein binding
d0005615cellular_componentextracellular space
d0005634cellular_componentnucleus
d0005654cellular_componentnucleoplasm
d0005730cellular_componentnucleolus
d0005737cellular_componentcytoplasm
d0006281biological_processDNA repair
d0006289biological_processnucleotide-excision repair
d0006511biological_processubiquitin-dependent protein catabolic process
d0006974biological_processDNA damage response
d0007056biological_processspindle assembly involved in female meiosis
d0007283biological_processspermatogenesis
d0008283biological_processcell population proliferation
d0010498biological_processproteasomal protein catabolic process
d0010506biological_processregulation of autophagy
d0016567biological_processprotein ubiquitination
d0019076biological_processviral release from host cell
d0030174biological_processregulation of DNA-templated DNA replication initiation
d0030674molecular_functionprotein-macromolecule adaptor activity
d0031297biological_processreplication fork processing
d0031464cellular_componentCul4A-RING E3 ubiquitin ligase complex
d0031465cellular_componentCul4B-RING E3 ubiquitin ligase complex
d0032814biological_processregulation of natural killer cell activation
d0032991cellular_componentprotein-containing complex
d0034644biological_processcellular response to UV
d0035861cellular_componentsite of double-strand break
d0040029biological_processepigenetic regulation of gene expression
d0042127biological_processregulation of cell population proliferation
d0042752biological_processregulation of circadian rhythm
d0042981biological_processregulation of apoptotic process
d0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
d0044725biological_processepigenetic programming in the zygotic pronuclei
d0044877molecular_functionprotein-containing complex binding
d0045070biological_processpositive regulation of viral genome replication
d0045722biological_processpositive regulation of gluconeogenesis
d0045732biological_processpositive regulation of protein catabolic process
d0045995biological_processregulation of embryonic development
d0046726biological_processpositive regulation by virus of viral protein levels in host cell
d0048511biological_processrhythmic process
d0051702biological_processbiological process involved in interaction with symbiont
d0060964biological_processregulation of miRNA-mediated gene silencing
d0070062cellular_componentextracellular exosome
d0070914biological_processUV-damage excision repair
d0071987molecular_functionWD40-repeat domain binding
d0080008cellular_componentCul4-RING E3 ubiquitin ligase complex
d0080135biological_processregulation of cellular response to stress
d0097602molecular_functioncullin family protein binding
d0160072molecular_functionubiquitin ligase complex scaffold activity
d1901987biological_processregulation of cell cycle phase transition
d1901990biological_processregulation of mitotic cell cycle phase transition
d1902412biological_processregulation of mitotic cytokinesis
d1904178biological_processnegative regulation of adipose tissue development
d2000036biological_processregulation of stem cell population maintenance
D0000166molecular_functionnucleotide binding
D0005524molecular_functionATP binding
D0016740molecular_functiontransferase activity
D0061631molecular_functionubiquitin conjugating enzyme activity
e0000082biological_processG1/S transition of mitotic cell cycle
e0001701biological_processin utero embryonic development
e0005515molecular_functionprotein binding
e0005634cellular_componentnucleus
e0005654cellular_componentnucleoplasm
e0005737cellular_componentcytoplasm
e0006281biological_processDNA repair
e0006289biological_processnucleotide-excision repair
e0006511biological_processubiquitin-dependent protein catabolic process
e0006974biological_processDNA damage response
e0007283biological_processspermatogenesis
e0008283biological_processcell population proliferation
e0010506biological_processregulation of autophagy
e0016567biological_processprotein ubiquitination
e0030174biological_processregulation of DNA-templated DNA replication initiation
e0031297biological_processreplication fork processing
e0031461cellular_componentcullin-RING ubiquitin ligase complex
e0031464cellular_componentCul4A-RING E3 ubiquitin ligase complex
e0031625molecular_functionubiquitin protein ligase binding
e0032502biological_processdevelopmental process
e0032814biological_processregulation of natural killer cell activation
e0034644biological_processcellular response to UV
e0040029biological_processepigenetic regulation of gene expression
e0042110biological_processT cell activation
e0042127biological_processregulation of cell population proliferation
e0042254biological_processribosome biogenesis
e0042981biological_processregulation of apoptotic process
e0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
e0045732biological_processpositive regulation of protein catabolic process
e0045995biological_processregulation of embryonic development
e0048511biological_processrhythmic process
e0051246biological_processregulation of protein metabolic process
e0060964biological_processregulation of miRNA-mediated gene silencing
e0061630molecular_functionubiquitin protein ligase activity
e0080008cellular_componentCul4-RING E3 ubiquitin ligase complex
e0080135biological_processregulation of cellular response to stress
e0097193biological_processintrinsic apoptotic signaling pathway
e0140627biological_processubiquitin-dependent protein catabolic process via the C-end degron rule pathway
e0160072molecular_functionubiquitin ligase complex scaffold activity
e1901987biological_processregulation of cell cycle phase transition
e1902412biological_processregulation of mitotic cytokinesis
e1904178biological_processnegative regulation of adipose tissue development
e2000036biological_processregulation of stem cell population maintenance
N0005515molecular_functionprotein binding
N0005634cellular_componentnucleus
N0005654cellular_componentnucleoplasm
N0005737cellular_componentcytoplasm
N0005829cellular_componentcytosol
N0006508biological_processproteolysis
N0006511biological_processubiquitin-dependent protein catabolic process
N0009653biological_processanatomical structure morphogenesis
N0016567biological_processprotein ubiquitination
N0019941biological_processmodification-dependent protein catabolic process
N0030162biological_processregulation of proteolysis
N0031386molecular_functionprotein tag activity
N0031625molecular_functionubiquitin protein ligase binding
N0036211biological_processprotein modification process
N0045116biological_processprotein neddylation
N0070062cellular_componentextracellular exosome
N0072757biological_processcellular response to camptothecin
N0098794cellular_componentpostsynapse
N0098978cellular_componentglutamatergic synapse
N0150052biological_processregulation of postsynapse assembly
R0000082biological_processG1/S transition of mitotic cell cycle
R0000122biological_processnegative regulation of transcription by RNA polymerase II
R0000165biological_processMAPK cascade
R0000209biological_processprotein polyubiquitination
R0004842molecular_functionubiquitin-protein transferase activity
R0005515molecular_functionprotein binding
R0005634cellular_componentnucleus
R0005654cellular_componentnucleoplasm
R0005737cellular_componentcytoplasm
R0005794cellular_componentGolgi apparatus
R0005813cellular_componentcentrosome
R0005829cellular_componentcytosol
R0006281biological_processDNA repair
R0006283biological_processtranscription-coupled nucleotide-excision repair
R0006289biological_processnucleotide-excision repair
R0006355biological_processregulation of DNA-templated transcription
R0006511biological_processubiquitin-dependent protein catabolic process
R0006513biological_processprotein monoubiquitination
R0006879biological_processintracellular iron ion homeostasis
R0006974biological_processDNA damage response
R0007283biological_processspermatogenesis
R0007346biological_processregulation of mitotic cell cycle
R0008270molecular_functionzinc ion binding
R0008283biological_processcell population proliferation
R0010506biological_processregulation of autophagy
R0010564biological_processregulation of cell cycle process
R0010824biological_processregulation of centrosome duplication
R0014033biological_processneural crest cell differentiation
R0016567biological_processprotein ubiquitination
R0016740molecular_functiontransferase activity
R0019005cellular_componentSCF ubiquitin ligase complex
R0019788molecular_functionNEDD8 transferase activity
R0030174biological_processregulation of DNA-templated DNA replication initiation
R0030510biological_processregulation of BMP signaling pathway
R0030891cellular_componentVCB complex
R0031146biological_processSCF-dependent proteasomal ubiquitin-dependent protein catabolic process
R0031297biological_processreplication fork processing
R0031461cellular_componentcullin-RING ubiquitin ligase complex
R0031462cellular_componentCul2-RING ubiquitin ligase complex
R0031463cellular_componentCul3-RING ubiquitin ligase complex
R0031464cellular_componentCul4A-RING E3 ubiquitin ligase complex
R0031465cellular_componentCul4B-RING E3 ubiquitin ligase complex
R0031466cellular_componentCul5-RING ubiquitin ligase complex
R0031467cellular_componentCul7-RING ubiquitin ligase complex
R0031625molecular_functionubiquitin protein ligase binding
R0032006biological_processregulation of TOR signaling
R0032436biological_processpositive regulation of proteasomal ubiquitin-dependent protein catabolic process
R0032480biological_processnegative regulation of type I interferon production
R0032814biological_processregulation of natural killer cell activation
R0034450molecular_functionubiquitin-ubiquitin ligase activity
R0034599biological_processcellular response to oxidative stress
R0034644biological_processcellular response to UV
R0040029biological_processepigenetic regulation of gene expression
R0042110biological_processT cell activation
R0042127biological_processregulation of cell population proliferation
R0042752biological_processregulation of circadian rhythm
R0042770biological_processsignal transduction in response to DNA damage
R0042981biological_processregulation of apoptotic process
R0043123biological_processpositive regulation of canonical NF-kappaB signal transduction
R0043124biological_processnegative regulation of canonical NF-kappaB signal transduction
R0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
R0043687biological_processpost-translational protein modification
R0044314biological_processprotein K27-linked ubiquitination
R0044877molecular_functionprotein-containing complex binding
R0045116biological_processprotein neddylation
R0045732biological_processpositive regulation of protein catabolic process
R0045995biological_processregulation of embryonic development
R0046627biological_processnegative regulation of insulin receptor signaling pathway
R0046872molecular_functionmetal ion binding
R0050727biological_processregulation of inflammatory response
R0051298biological_processcentrosome duplication
R0051726biological_processregulation of cell cycle
R0060090molecular_functionmolecular adaptor activity
R0060173biological_processlimb development
R0060271biological_processcilium assembly
R0060964biological_processregulation of miRNA-mediated gene silencing
R0061629molecular_functionRNA polymerase II-specific DNA-binding transcription factor binding
R0061630molecular_functionubiquitin protein ligase activity
R0061663molecular_functionNEDD8 ligase activity
R0062197biological_processcellular response to chemical stress
R0070936biological_processprotein K48-linked ubiquitination
R0071230biological_processcellular response to amino acid stimulus
R0080008cellular_componentCul4-RING E3 ubiquitin ligase complex
R0080135biological_processregulation of cellular response to stress
R0090090biological_processnegative regulation of canonical Wnt signaling pathway
R0090734cellular_componentsite of DNA damage
R0097602molecular_functioncullin family protein binding
R0140627biological_processubiquitin-dependent protein catabolic process via the C-end degron rule pathway
R0160240biological_processRNA polymerase II transcription initiation surveillance
R0160276biological_processnegative regulation of beige fat cell differentiation
R1900076biological_processregulation of cellular response to insulin stimulus
R1901524biological_processregulation of mitophagy
R1901525biological_processnegative regulation of mitophagy
R1901987biological_processregulation of cell cycle phase transition
R1902412biological_processregulation of mitotic cytokinesis
R1902499biological_processpositive regulation of protein autoubiquitination
R1902883biological_processnegative regulation of response to oxidative stress
R1904178biological_processnegative regulation of adipose tissue development
R1904263biological_processpositive regulation of TORC1 signaling
R1904415biological_processregulation of xenophagy
R1990116biological_processribosome-associated ubiquitin-dependent protein catabolic process
R2000001biological_processregulation of DNA damage checkpoint
R2000036biological_processregulation of stem cell population maintenance
R2000104biological_processnegative regulation of DNA-templated DNA replication
Functional Information from PROSITE/UniProt
site_idPS00183
Number of Residues16
DetailsUBC_1 Ubiquitin-conjugating (UBC) active site signature. YHPNInsn.GsICLdiL
ChainResidueDetails
DTYR74-LEU89

site_idPS00299
Number of Residues26
DetailsUBIQUITIN_1 Ubiquitin domain signature. KakIqDkegIPpdqQrLIFaGkqleD
ChainResidueDetails
ULYS27-ASP52
NLYS27-ASP52

site_idPS00678
Number of Residues15
DetailsWD_REPEATS_1 Trp-Asp (WD) repeats signature. LATAsaDsRVKLWDV
ChainResidueDetails
aLEU202-VAL216
aLEU260-SER274

site_idPS01256
Number of Residues28
DetailsCULLIN_1 Cullin family signature. LKkrIesLIDRdYMeRdkdnpnqYhYvA
ChainResidueDetails
eLEU732-ALA759

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI2
Number of Residues2
DetailsRegion: {"description":"Interaction with UBE1C","evidences":[{"source":"PubMed","id":"14690597","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues2
DetailsSite: {"description":"Interaction with UBE1C","evidences":[{"source":"PubMed","id":"14690597","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues1
DetailsModified residue: {"description":"(Microbial infection) Deamidated glutamine","evidences":[{"source":"PubMed","id":"20688984","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"21903097","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"23175788","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"23589306","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"26632597","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues1
DetailsModified residue: {"description":"N6-acetyllysine","evidences":[{"source":"UniProtKB","id":"P29595","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues2
DetailsCross-link: {"description":"Glycyl lysine isopeptide (Gly-Lys) (interchain with K-? in acceptor proteins)","evidences":[{"source":"PubMed","id":"38316879","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI7
Number of Residues7
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"11961546","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"38605244","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1LDJ","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1LDK","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1U6G","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2HYE","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3DPL","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3DQV","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3RTR","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4F52","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4P5O","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8Q7H","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8RHZ","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI8
Number of Residues4
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"11961546","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"38605244","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1LDJ","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1LDK","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1U6G","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2HYE","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3DPL","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3DQV","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3RTR","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4F52","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4P5O","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7Z8B","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8Q7H","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8RHZ","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI9
Number of Residues1
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"11961546","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"38605244","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1LDJ","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1LDK","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1U6G","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2HYE","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3DQV","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3RTR","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4F52","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4P5O","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8Q7H","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8RHZ","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI10
Number of Residues75
DetailsDomain: {"description":"Ubiquitin-like 9","evidences":[{"source":"PROSITE-ProRule","id":"PRU00214","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI11
Number of Residues40
DetailsRepeat: {"description":"WD 1"}
ChainResidueDetails

site_idSWS_FT_FI12
Number of Residues41
DetailsRepeat: {"description":"WD 2"}
ChainResidueDetails

site_idSWS_FT_FI13
Number of Residues40
DetailsRepeat: {"description":"WD 3"}
ChainResidueDetails

site_idSWS_FT_FI14
Number of Residues39
DetailsRepeat: {"description":"WD 4"}
ChainResidueDetails

site_idSWS_FT_FI15
Number of Residues39
DetailsRepeat: {"description":"WD 5"}
ChainResidueDetails

site_idSWS_FT_FI16
Number of Residues40
DetailsRepeat: {"description":"WD 6"}
ChainResidueDetails

site_idSWS_FT_FI17
Number of Residues38
DetailsRepeat: {"description":"WD 7"}
ChainResidueDetails

site_idSWS_FT_FI18
Number of Residues19
DetailsRegion: {"description":"Disordered","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}
ChainResidueDetails

site_idSWS_FT_FI19
Number of Residues143
DetailsRegion: {"description":"VHS-like"}
ChainResidueDetails

site_idSWS_FT_FI20
Number of Residues9
DetailsCompositional bias: {"description":"Basic and acidic residues","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}
ChainResidueDetails

site_idSWS_FT_FI21
Number of Residues316
DetailsRegion: {"description":"WD repeat beta-propeller B; Interaction with CUL4A"}
ChainResidueDetails

site_idSWS_FT_FI22
Number of Residues1
DetailsModified residue: {"description":"N-acetylserine","evidences":[{"source":"PubMed","id":"19413330","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI23
Number of Residues1
DetailsModified residue: {"description":"N6-acetyllysine","evidences":[{"source":"PubMed","id":"19608861","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI24
Number of Residues1
DetailsModified residue: {"description":"Phosphothreonine","evidences":[{"source":"UniProtKB","id":"Q9ESW0","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI25
Number of Residues2
DetailsCross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in NEDD8)","evidences":[{"source":"PubMed","id":"38316879","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

247947

PDB entries from 2026-01-21

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