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7ZBT

Subtomogram averaging of Rubisco from native Halothiobacillus carboxysomes

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0004497molecular_functionmonooxygenase activity
A0015977biological_processcarbon fixation
A0016829molecular_functionlyase activity
A0016984molecular_functionribulose-bisphosphate carboxylase activity
A0019253biological_processreductive pentose-phosphate cycle
A0031470cellular_componentcarboxysome
A0046872molecular_functionmetal ion binding
B0000287molecular_functionmagnesium ion binding
B0004497molecular_functionmonooxygenase activity
B0015977biological_processcarbon fixation
B0016829molecular_functionlyase activity
B0016984molecular_functionribulose-bisphosphate carboxylase activity
B0019253biological_processreductive pentose-phosphate cycle
B0031470cellular_componentcarboxysome
B0046872molecular_functionmetal ion binding
C0000287molecular_functionmagnesium ion binding
C0004497molecular_functionmonooxygenase activity
C0015977biological_processcarbon fixation
C0016829molecular_functionlyase activity
C0016984molecular_functionribulose-bisphosphate carboxylase activity
C0019253biological_processreductive pentose-phosphate cycle
C0031470cellular_componentcarboxysome
C0046872molecular_functionmetal ion binding
D0000287molecular_functionmagnesium ion binding
D0004497molecular_functionmonooxygenase activity
D0015977biological_processcarbon fixation
D0016829molecular_functionlyase activity
D0016984molecular_functionribulose-bisphosphate carboxylase activity
D0019253biological_processreductive pentose-phosphate cycle
D0031470cellular_componentcarboxysome
D0046872molecular_functionmetal ion binding
E0000287molecular_functionmagnesium ion binding
E0004497molecular_functionmonooxygenase activity
E0015977biological_processcarbon fixation
E0016829molecular_functionlyase activity
E0016984molecular_functionribulose-bisphosphate carboxylase activity
E0019253biological_processreductive pentose-phosphate cycle
E0031470cellular_componentcarboxysome
E0046872molecular_functionmetal ion binding
F0000287molecular_functionmagnesium ion binding
F0004497molecular_functionmonooxygenase activity
F0015977biological_processcarbon fixation
F0016829molecular_functionlyase activity
F0016984molecular_functionribulose-bisphosphate carboxylase activity
F0019253biological_processreductive pentose-phosphate cycle
F0031470cellular_componentcarboxysome
F0046872molecular_functionmetal ion binding
G0000287molecular_functionmagnesium ion binding
G0004497molecular_functionmonooxygenase activity
G0015977biological_processcarbon fixation
G0016829molecular_functionlyase activity
G0016984molecular_functionribulose-bisphosphate carboxylase activity
G0019253biological_processreductive pentose-phosphate cycle
G0031470cellular_componentcarboxysome
G0046872molecular_functionmetal ion binding
H0000287molecular_functionmagnesium ion binding
H0004497molecular_functionmonooxygenase activity
H0015977biological_processcarbon fixation
H0016829molecular_functionlyase activity
H0016984molecular_functionribulose-bisphosphate carboxylase activity
H0019253biological_processreductive pentose-phosphate cycle
H0031470cellular_componentcarboxysome
H0046872molecular_functionmetal ion binding
I0015977biological_processcarbon fixation
I0016984molecular_functionribulose-bisphosphate carboxylase activity
I0019253biological_processreductive pentose-phosphate cycle
I0031470cellular_componentcarboxysome
J0015977biological_processcarbon fixation
J0016984molecular_functionribulose-bisphosphate carboxylase activity
J0019253biological_processreductive pentose-phosphate cycle
J0031470cellular_componentcarboxysome
K0015977biological_processcarbon fixation
K0016984molecular_functionribulose-bisphosphate carboxylase activity
K0019253biological_processreductive pentose-phosphate cycle
K0031470cellular_componentcarboxysome
L0015977biological_processcarbon fixation
L0016984molecular_functionribulose-bisphosphate carboxylase activity
L0019253biological_processreductive pentose-phosphate cycle
L0031470cellular_componentcarboxysome
M0015977biological_processcarbon fixation
M0016984molecular_functionribulose-bisphosphate carboxylase activity
M0019253biological_processreductive pentose-phosphate cycle
M0031470cellular_componentcarboxysome
N0015977biological_processcarbon fixation
N0016984molecular_functionribulose-bisphosphate carboxylase activity
N0019253biological_processreductive pentose-phosphate cycle
N0031470cellular_componentcarboxysome
O0015977biological_processcarbon fixation
O0016984molecular_functionribulose-bisphosphate carboxylase activity
O0019253biological_processreductive pentose-phosphate cycle
O0031470cellular_componentcarboxysome
P0015977biological_processcarbon fixation
P0016984molecular_functionribulose-bisphosphate carboxylase activity
P0019253biological_processreductive pentose-phosphate cycle
P0031470cellular_componentcarboxysome
Functional Information from PROSITE/UniProt
site_idPS00157
Number of Residues9
DetailsRUBISCO_LARGE Ribulose bisphosphate carboxylase large chain active site. GlDFtKdDE
ChainResidueDetails
AGLY189-GLU197

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues16
DetailsACT_SITE: Proton acceptor => ECO:0000255|HAMAP-Rule:MF_01338
ChainResidueDetails
ALYS168
EHIS287
FLYS168
FHIS287
GLYS168
GHIS287
HLYS168
HHIS287
AHIS287
BLYS168
BHIS287
CLYS168
CHIS287
DLYS168
DHIS287
ELYS168

site_idSWS_FT_FI2
Number of Residues8
DetailsBINDING: in homodimeric partner => ECO:0000255|HAMAP-Rule:MF_01338
ChainResidueDetails
AASN116
BASN116
CASN116
DASN116
EASN116
HASN116
FASN116
GASN116

site_idSWS_FT_FI3
Number of Residues56
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01338
ChainResidueDetails
ATHR166
BARG288
BHIS320
BSER372
CTHR166
CLYS170
ALYS170
AASP196
AGLU197
AARG288
AHIS320
ASER372
BTHR166
BLYS170
CASP196
CGLU197
CARG288
CHIS320
CSER372
DTHR166
DLYS170
DASP196
DGLU197
DARG288
DHIS320
DSER372
ETHR166
ELYS170
EASP196
EGLU197
EARG288
EHIS320
ESER372
FTHR166
FLYS170
FASP196
FGLU197
FARG288
FHIS320
FSER372
GTHR166
GLYS170
GASP196
GGLU197
GARG288
GHIS320
GSER372
HTHR166
HLYS170
HASP196
HGLU197
HARG288
HHIS320
HSER372
BASP196
BGLU197

site_idSWS_FT_FI4
Number of Residues8
DetailsBINDING: via carbamate group => ECO:0000255|HAMAP-Rule:MF_01338
ChainResidueDetails
ALYS194
BLYS194
CLYS194
DLYS194
ELYS194
GLYS194
FLYS194
HLYS194

site_idSWS_FT_FI5
Number of Residues8
DetailsSITE: Transition state stabilizer => ECO:0000255|HAMAP-Rule:MF_01338
ChainResidueDetails
ALYS327
BLYS327
CLYS327
DLYS327
ELYS327
GLYS327
FLYS327
HLYS327

site_idSWS_FT_FI6
Number of Residues8
DetailsMOD_RES: N6-carboxylysine => ECO:0000255|HAMAP-Rule:MF_01338
ChainResidueDetails
BLYS194
CLYS194
DLYS194
ELYS194
GLYS194
ALYS194
FLYS194
HLYS194

219869

PDB entries from 2024-05-15

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