7XIY
SARS-CoV-2 Omicron BA.3 variant spike
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0016020 | cellular_component | membrane |
A | 0019031 | cellular_component | viral envelope |
A | 0019064 | biological_process | fusion of virus membrane with host plasma membrane |
A | 0039654 | biological_process | fusion of virus membrane with host endosome membrane |
A | 0046813 | biological_process | receptor-mediated virion attachment to host cell |
A | 0055036 | cellular_component | virion membrane |
A | 0075509 | biological_process | endocytosis involved in viral entry into host cell |
B | 0016020 | cellular_component | membrane |
B | 0019031 | cellular_component | viral envelope |
B | 0019064 | biological_process | fusion of virus membrane with host plasma membrane |
B | 0039654 | biological_process | fusion of virus membrane with host endosome membrane |
B | 0046813 | biological_process | receptor-mediated virion attachment to host cell |
B | 0055036 | cellular_component | virion membrane |
B | 0075509 | biological_process | endocytosis involved in viral entry into host cell |
C | 0016020 | cellular_component | membrane |
C | 0019031 | cellular_component | viral envelope |
C | 0019064 | biological_process | fusion of virus membrane with host plasma membrane |
C | 0039654 | biological_process | fusion of virus membrane with host endosome membrane |
C | 0046813 | biological_process | receptor-mediated virion attachment to host cell |
C | 0055036 | cellular_component | virion membrane |
C | 0075509 | biological_process | endocytosis involved in viral entry into host cell |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 3597 |
Details | TOPO_DOM: Extracellular => ECO:0000255|HAMAP-Rule:MF_04099 |
Chain | Residue | Details |
B | GLN14-GLY1219 | |
A | GLN14-GLY1219 | |
C | GLN14-GLY1219 |
site_id | SWS_FT_FI2 |
Number of Residues | 60 |
Details | TRANSMEM: Helical => ECO:0000255|HAMAP-Rule:MF_04099 |
Chain | Residue | Details |
B | PHE1220-CYS1240 | |
A | PHE1220-CYS1240 | |
C | PHE1220-CYS1240 |
site_id | SWS_FT_FI3 |
Number of Residues | 114 |
Details | TOPO_DOM: Cytoplasmic => ECO:0000255|HAMAP-Rule:MF_04099 |
Chain | Residue | Details |
site_id | SWS_FT_FI4 |
Number of Residues | 3 |
Details | SITE: Cleavage; by host furin => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32142651, ECO:0000269|PubMed:32362314, ECO:0000269|PubMed:32703818, ECO:0000269|PubMed:34159616 |
Chain | Residue | Details |
B | SER691 | |
A | SER691 | |
C | SER691 |
site_id | SWS_FT_FI5 |
Number of Residues | 3 |
Details | SITE: Cleavage; by host TMPRSS2 or CTSL => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32703818, ECO:0000269|PubMed:34159616 |
Chain | Residue | Details |
B | LEU821 | |
A | LEU821 | |
C | LEU821 |
site_id | SWS_FT_FI6 |
Number of Residues | 15 |
Details | LIPID: S-palmitoyl cysteine; by host ZDHHC20 => ECO:0000269|PubMed:34599882 |
Chain | Residue | Details |
B | CYS1241 | |
A | SER1249 | |
C | CYS1241 | |
C | SER1242 | |
C | GLY1246 | |
C | CYS1247 | |
C | SER1249 | |
B | SER1242 | |
B | GLY1246 | |
B | CYS1247 | |
B | SER1249 | |
A | CYS1241 | |
A | SER1242 | |
A | GLY1246 | |
A | CYS1247 |
site_id | SWS_FT_FI7 |
Number of Residues | 15 |
Details | LIPID: S-palmitoyl cysteine; by host ZDHHC20; partial => ECO:0000269|PubMed:34599882 |
Chain | Residue | Details |
B | CYS1253 | |
A | ASP1260 | |
C | CYS1253 | |
C | CYS1254 | |
C | PHE1256 | |
C | ASP1259 | |
C | ASP1260 | |
B | CYS1254 | |
B | PHE1256 | |
B | ASP1259 | |
B | ASP1260 | |
A | CYS1253 | |
A | CYS1254 | |
A | PHE1256 | |
A | ASP1259 |
site_id | SWS_FT_FI8 |
Number of Residues | 9 |
Details | CARBOHYD: N-linked (GlcNAc...) (complex) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32366695, ECO:0000269|PubMed:32979942 |
Chain | Residue | Details |
B | ASN17 | |
B | VAL1164 | |
B | ILE1179 | |
A | ASN17 | |
A | VAL1164 | |
A | ILE1179 | |
C | ASN17 | |
C | VAL1164 | |
C | ILE1179 |
site_id | SWS_FT_FI9 |
Number of Residues | 15 |
Details | CARBOHYD: N-linked (GlcNAc...) (hybrid) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32155444, ECO:0000269|PubMed:32363391, ECO:0000269|PubMed:32366695, ECO:0000269|PubMed:32979942 |
Chain | Residue | Details |
B | ASN61 | |
A | ALA1080 | |
C | ASN61 | |
C | THR124 | |
C | THR723 | |
C | PRO807 | |
C | ALA1080 | |
B | THR124 | |
B | THR723 | |
B | PRO807 | |
B | ALA1080 | |
A | ASN61 | |
A | THR124 | |
A | THR723 | |
A | PRO807 |
site_id | SWS_FT_FI10 |
Number of Residues | 9 |
Details | CARBOHYD: N-linked (GlcNAc...) (complex) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32363391, ECO:0000269|PubMed:32366695, ECO:0000269|PubMed:32979942 |
Chain | Residue | Details |
B | THR76 | |
B | GLU154 | |
B | LEU1200 | |
A | THR76 | |
A | GLU154 | |
A | LEU1200 | |
C | THR76 | |
C | GLU154 | |
C | LEU1200 |
site_id | SWS_FT_FI11 |
Number of Residues | 21 |
Details | CARBOHYD: N-linked (GlcNAc...) (complex) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32155444, ECO:0000269|PubMed:32363391, ECO:0000269|PubMed:32366695, ECO:0000269|PubMed:32979942 |
Chain | Residue | Details |
B | TYR170 | |
A | PRO337 | |
A | SER349 | |
A | VAL622 | |
A | ASP663 | |
A | VAL1104 | |
C | TYR170 | |
C | ALA288 | |
C | PRO337 | |
C | SER349 | |
C | VAL622 | |
B | ALA288 | |
C | ASP663 | |
C | VAL1104 | |
B | PRO337 | |
B | SER349 | |
B | VAL622 | |
B | ASP663 | |
B | VAL1104 | |
A | TYR170 | |
A | ALA288 |
site_id | SWS_FT_FI12 |
Number of Residues | 6 |
Details | CARBOHYD: N-linked (GlcNAc...) (high mannose) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32155444, ECO:0000269|PubMed:32363391, ECO:0000269|PubMed:32366695, ECO:0000269|PubMed:32979942 |
Chain | Residue | Details |
B | THR240 | |
B | PRO715 | |
A | THR240 | |
A | PRO715 | |
C | THR240 | |
C | PRO715 |
site_id | SWS_FT_FI13 |
Number of Residues | 3 |
Details | CARBOHYD: O-linked (GalNAc) threonine; by host => ECO:0000269|PubMed:32363391 |
Chain | Residue | Details |
B | PHE329 | |
A | PHE329 | |
C | PHE329 |
site_id | SWS_FT_FI14 |
Number of Residues | 3 |
Details | CARBOHYD: O-linked (HexNAc...) serine; by host => ECO:0000269|PubMed:32363391 |
Chain | Residue | Details |
B | ASN331 | |
A | ASN331 | |
C | ASN331 |
site_id | SWS_FT_FI15 |
Number of Residues | 3 |
Details | CARBOHYD: N-linked (GlcNAc...) (hybrid) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32155444, ECO:0000269|PubMed:32366695, ECO:0000269|PubMed:32979942 |
Chain | Residue | Details |
B | ALA609 | |
A | ALA609 | |
C | ALA609 |
site_id | SWS_FT_FI16 |
Number of Residues | 6 |
Details | CARBOHYD: O-linked (GlcNAc...) threonine; by host GALNT1 => ECO:0000269|PubMed:34732583 |
Chain | Residue | Details |
B | ARG682 | |
B | ALA684 | |
A | ARG682 | |
A | ALA684 | |
C | ARG682 | |
C | ALA684 |
site_id | SWS_FT_FI17 |
Number of Residues | 3 |
Details | CARBOHYD: N-linked (GlcNAc...) (complex) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32155444, ECO:0000269|PubMed:32366695, ECO:0000269|PubMed:32979942 |
Chain | Residue | Details |
B | PRO1140 | |
A | PRO1140 | |
C | PRO1140 |