7WTI
SARS-CoV-2 Omicron variant spike in complex with Fab XGv264
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0016020 | cellular_component | membrane |
A | 0019031 | cellular_component | viral envelope |
A | 0019064 | biological_process | fusion of virus membrane with host plasma membrane |
A | 0039654 | biological_process | fusion of virus membrane with host endosome membrane |
A | 0046813 | biological_process | receptor-mediated virion attachment to host cell |
A | 0055036 | cellular_component | virion membrane |
A | 0075509 | biological_process | endocytosis involved in viral entry into host cell |
B | 0016020 | cellular_component | membrane |
B | 0019031 | cellular_component | viral envelope |
B | 0019064 | biological_process | fusion of virus membrane with host plasma membrane |
B | 0039654 | biological_process | fusion of virus membrane with host endosome membrane |
B | 0046813 | biological_process | receptor-mediated virion attachment to host cell |
B | 0055036 | cellular_component | virion membrane |
B | 0075509 | biological_process | endocytosis involved in viral entry into host cell |
C | 0016020 | cellular_component | membrane |
C | 0019031 | cellular_component | viral envelope |
C | 0019064 | biological_process | fusion of virus membrane with host plasma membrane |
C | 0039654 | biological_process | fusion of virus membrane with host endosome membrane |
C | 0046813 | biological_process | receptor-mediated virion attachment to host cell |
C | 0055036 | cellular_component | virion membrane |
C | 0075509 | biological_process | endocytosis involved in viral entry into host cell |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 3597 |
Details | TOPO_DOM: Extracellular => ECO:0000255|HAMAP-Rule:MF_04099 |
Chain | Residue | Details |
A | GLN14-ILE1218 | |
B | GLN14-ILE1218 | |
C | GLN14-ILE1218 |
site_id | SWS_FT_FI2 |
Number of Residues | 60 |
Details | TRANSMEM: Helical => ECO:0000255|HAMAP-Rule:MF_04099 |
Chain | Residue | Details |
A | TRP1216-LEU1236 | |
B | TRP1216-LEU1236 | |
C | TRP1216-LEU1236 |
site_id | SWS_FT_FI3 |
Number of Residues | 114 |
Details | TOPO_DOM: Cytoplasmic => ECO:0000255|HAMAP-Rule:MF_04099 |
Chain | Residue | Details |
A | CYS1237-THR1275 | |
B | CYS1237-THR1275 | |
C | CYS1237-THR1275 |
site_id | SWS_FT_FI4 |
Number of Residues | 3 |
Details | SITE: Cleavage; by host furin => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32142651, ECO:0000269|PubMed:32362314, ECO:0000269|PubMed:32703818, ECO:0000269|PubMed:34159616 |
Chain | Residue | Details |
A | ALA687 | |
B | ALA687 | |
C | ALA687 |
site_id | SWS_FT_FI5 |
Number of Residues | 3 |
Details | SITE: Cleavage; by host TMPRSS2 or CTSL => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32703818, ECO:0000269|PubMed:34159616 |
Chain | Residue | Details |
A | ARG817 | |
B | ARG817 | |
C | ARG817 |
site_id | SWS_FT_FI6 |
Number of Residues | 15 |
Details | LIPID: S-palmitoyl cysteine; by host ZDHHC20 => ECO:0000269|PubMed:34599882 |
Chain | Residue | Details |
A | CYS1237 | |
B | CYS1245 | |
C | CYS1237 | |
C | CYS1238 | |
C | CYS1242 | |
C | CYS1243 | |
C | CYS1245 | |
A | CYS1238 | |
A | CYS1242 | |
A | CYS1243 | |
A | CYS1245 | |
B | CYS1237 | |
B | CYS1238 | |
B | CYS1242 | |
B | CYS1243 |
site_id | SWS_FT_FI7 |
Number of Residues | 15 |
Details | LIPID: S-palmitoyl cysteine; by host ZDHHC20; partial => ECO:0000269|PubMed:34599882 |
Chain | Residue | Details |
A | CYS1249 | |
B | CYS1256 | |
C | CYS1249 | |
C | CYS1250 | |
C | CYS1252 | |
C | CYS1255 | |
C | CYS1256 | |
A | CYS1250 | |
A | CYS1252 | |
A | CYS1255 | |
A | CYS1256 | |
B | CYS1249 | |
B | CYS1250 | |
B | CYS1252 | |
B | CYS1255 |
site_id | SWS_FT_FI8 |
Number of Residues | 9 |
Details | CARBOHYD: N-linked (GlcNAc...) (complex) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32366695, ECO:0000269|PubMed:32979942 |
Chain | Residue | Details |
A | ASN17 | |
A | ASN1160 | |
A | ASN1175 | |
B | ASN17 | |
B | ASN1160 | |
B | ASN1175 | |
C | ASN17 | |
C | ASN1160 | |
C | ASN1175 |
site_id | SWS_FT_FI9 |
Number of Residues | 15 |
Details | CARBOHYD: N-linked (GlcNAc...) (hybrid) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32155444, ECO:0000269|PubMed:32363391, ECO:0000269|PubMed:32366695, ECO:0000269|PubMed:32979942 |
Chain | Residue | Details |
A | ASN61 | |
B | ASN1076 | |
C | ASN61 | |
C | THR124 | |
C | ASN719 | |
C | ASN803 | |
C | ASN1076 | |
A | THR124 | |
A | ASN719 | |
A | ASN803 | |
A | ASN1076 | |
B | ASN61 | |
B | THR124 | |
B | ASN719 | |
B | ASN803 |
site_id | SWS_FT_FI10 |
Number of Residues | 9 |
Details | CARBOHYD: N-linked (GlcNAc...) (complex) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32363391, ECO:0000269|PubMed:32366695, ECO:0000269|PubMed:32979942 |
Chain | Residue | Details |
A | THR76 | |
A | GLU151 | |
A | ASN1196 | |
B | THR76 | |
B | GLU151 | |
B | ASN1196 | |
C | THR76 | |
C | GLU151 | |
C | ASN1196 |
site_id | SWS_FT_FI11 |
Number of Residues | 21 |
Details | CARBOHYD: N-linked (GlcNAc...) (complex) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32155444, ECO:0000269|PubMed:32363391, ECO:0000269|PubMed:32366695, ECO:0000269|PubMed:32979942 |
Chain | Residue | Details |
A | TYR167 | |
B | ASN333 | |
B | ASN345 | |
B | ASN618 | |
B | ASN659 | |
B | ASN1100 | |
C | TYR167 | |
C | ASN284 | |
C | ASN333 | |
C | ASN345 | |
C | ASN618 | |
A | ASN284 | |
C | ASN659 | |
C | ASN1100 | |
A | ASN333 | |
A | ASN345 | |
A | ASN618 | |
A | ASN659 | |
A | ASN1100 | |
B | TYR167 | |
B | ASN284 |
site_id | SWS_FT_FI12 |
Number of Residues | 6 |
Details | CARBOHYD: N-linked (GlcNAc...) (high mannose) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32155444, ECO:0000269|PubMed:32363391, ECO:0000269|PubMed:32366695, ECO:0000269|PubMed:32979942 |
Chain | Residue | Details |
A | ASN233 | |
A | ASN711 | |
B | ASN233 | |
B | ASN711 | |
C | ASN233 | |
C | ASN711 |
site_id | SWS_FT_FI13 |
Number of Residues | 3 |
Details | CARBOHYD: O-linked (GalNAc) threonine; by host => ECO:0000269|PubMed:32363391 |
Chain | Residue | Details |
A | THR325 | |
B | THR325 | |
C | THR325 |
site_id | SWS_FT_FI14 |
Number of Residues | 3 |
Details | CARBOHYD: O-linked (HexNAc...) serine; by host => ECO:0000269|PubMed:32363391 |
Chain | Residue | Details |
A | SER327 | |
B | SER327 | |
C | SER327 |
site_id | SWS_FT_FI15 |
Number of Residues | 3 |
Details | CARBOHYD: N-linked (GlcNAc...) (hybrid) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32155444, ECO:0000269|PubMed:32366695, ECO:0000269|PubMed:32979942 |
Chain | Residue | Details |
A | ASN605 | |
B | ASN605 | |
C | ASN605 |
site_id | SWS_FT_FI16 |
Number of Residues | 6 |
Details | CARBOHYD: O-linked (GlcNAc...) threonine; by host GALNT1 => ECO:0000269|PubMed:34732583 |
Chain | Residue | Details |
A | THR678 | |
A | THR680 | |
B | THR678 | |
B | THR680 | |
C | THR678 | |
C | THR680 |
site_id | SWS_FT_FI17 |
Number of Residues | 3 |
Details | CARBOHYD: N-linked (GlcNAc...) (complex) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32155444, ECO:0000269|PubMed:32366695, ECO:0000269|PubMed:32979942 |
Chain | Residue | Details |
A | ASN1136 | |
B | ASN1136 | |
C | ASN1136 |