7WOW
The state 6 of Omicron Spike with bispecific antibody FD01
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0016020 | cellular_component | membrane |
A | 0019031 | cellular_component | viral envelope |
A | 0019064 | biological_process | fusion of virus membrane with host plasma membrane |
A | 0039654 | biological_process | fusion of virus membrane with host endosome membrane |
A | 0046813 | biological_process | receptor-mediated virion attachment to host cell |
A | 0055036 | cellular_component | virion membrane |
A | 0075509 | biological_process | endocytosis involved in viral entry into host cell |
B | 0016020 | cellular_component | membrane |
B | 0019031 | cellular_component | viral envelope |
B | 0019064 | biological_process | fusion of virus membrane with host plasma membrane |
B | 0039654 | biological_process | fusion of virus membrane with host endosome membrane |
B | 0046813 | biological_process | receptor-mediated virion attachment to host cell |
B | 0055036 | cellular_component | virion membrane |
B | 0075509 | biological_process | endocytosis involved in viral entry into host cell |
C | 0016020 | cellular_component | membrane |
C | 0019031 | cellular_component | viral envelope |
C | 0019064 | biological_process | fusion of virus membrane with host plasma membrane |
C | 0039654 | biological_process | fusion of virus membrane with host endosome membrane |
C | 0046813 | biological_process | receptor-mediated virion attachment to host cell |
C | 0055036 | cellular_component | virion membrane |
C | 0075509 | biological_process | endocytosis involved in viral entry into host cell |
J | 0016020 | cellular_component | membrane |
J | 0019031 | cellular_component | viral envelope |
J | 0019064 | biological_process | fusion of virus membrane with host plasma membrane |
J | 0039654 | biological_process | fusion of virus membrane with host endosome membrane |
J | 0046813 | biological_process | receptor-mediated virion attachment to host cell |
J | 0055036 | cellular_component | virion membrane |
J | 0075509 | biological_process | endocytosis involved in viral entry into host cell |
K | 0016020 | cellular_component | membrane |
K | 0019031 | cellular_component | viral envelope |
K | 0019064 | biological_process | fusion of virus membrane with host plasma membrane |
K | 0039654 | biological_process | fusion of virus membrane with host endosome membrane |
K | 0046813 | biological_process | receptor-mediated virion attachment to host cell |
K | 0055036 | cellular_component | virion membrane |
K | 0075509 | biological_process | endocytosis involved in viral entry into host cell |
L | 0016020 | cellular_component | membrane |
L | 0019031 | cellular_component | viral envelope |
L | 0019064 | biological_process | fusion of virus membrane with host plasma membrane |
L | 0039654 | biological_process | fusion of virus membrane with host endosome membrane |
L | 0046813 | biological_process | receptor-mediated virion attachment to host cell |
L | 0055036 | cellular_component | virion membrane |
L | 0075509 | biological_process | endocytosis involved in viral entry into host cell |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 6 |
Details | SITE: Cleavage; by host furin => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32142651, ECO:0000269|PubMed:32362314, ECO:0000269|PubMed:32703818, ECO:0000269|PubMed:34159616 |
Chain | Residue | Details |
A | SER685 | |
B | SER685 | |
C | SER685 | |
J | SER685 | |
K | SER685 | |
L | SER685 |
site_id | SWS_FT_FI2 |
Number of Residues | 6 |
Details | SITE: Cleavage; by host TMPRSS2 or CTSL => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32703818, ECO:0000269|PubMed:34159616 |
Chain | Residue | Details |
A | ARG815 | |
B | ARG815 | |
C | ARG815 | |
J | ARG815 | |
K | ARG815 | |
L | ARG815 |
site_id | SWS_FT_FI3 |
Number of Residues | 18 |
Details | CARBOHYD: N-linked (GlcNAc...) (complex) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32366695, ECO:0000269|PubMed:32979942 |
Chain | Residue | Details |
A | ASN17 | |
J | ASN17 | |
J | ASN1158 | |
J | ASN1173 | |
K | ASN17 | |
K | ASN1158 | |
K | ASN1173 | |
L | ASN17 | |
L | ASN1158 | |
L | ASN1173 | |
A | ASN1158 | |
A | ASN1173 | |
B | ASN17 | |
B | ASN1158 | |
B | ASN1173 | |
C | ASN17 | |
C | ASN1158 | |
C | ASN1173 |
site_id | SWS_FT_FI4 |
Number of Residues | 30 |
Details | CARBOHYD: N-linked (GlcNAc...) (hybrid) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32155444, ECO:0000269|PubMed:32363391, ECO:0000269|PubMed:32366695, ECO:0000269|PubMed:32979942 |
Chain | Residue | Details |
A | ASN61 | |
B | ASN1074 | |
C | ASN61 | |
C | THR124 | |
C | ASN717 | |
C | ASN801 | |
C | ASN1074 | |
J | ASN61 | |
J | THR124 | |
J | ASN717 | |
J | ASN801 | |
A | THR124 | |
J | ASN1074 | |
K | ASN61 | |
K | THR124 | |
K | ASN717 | |
K | ASN801 | |
K | ASN1074 | |
L | ASN61 | |
L | THR124 | |
L | ASN717 | |
L | ASN801 | |
A | ASN717 | |
L | ASN1074 | |
A | ASN801 | |
A | ASN1074 | |
B | ASN61 | |
B | THR124 | |
B | ASN717 | |
B | ASN801 |
site_id | SWS_FT_FI5 |
Number of Residues | 18 |
Details | CARBOHYD: N-linked (GlcNAc...) (complex) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32363391, ECO:0000269|PubMed:32366695, ECO:0000269|PubMed:32979942 |
Chain | Residue | Details |
A | THR76 | |
J | THR76 | |
J | GLU154 | |
J | ASN1194 | |
K | THR76 | |
K | GLU154 | |
K | ASN1194 | |
L | THR76 | |
L | GLU154 | |
L | ASN1194 | |
A | GLU154 | |
A | ASN1194 | |
B | THR76 | |
B | GLU154 | |
B | ASN1194 | |
C | THR76 | |
C | GLU154 | |
C | ASN1194 |
site_id | SWS_FT_FI6 |
Number of Residues | 42 |
Details | CARBOHYD: N-linked (GlcNAc...) (complex) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32155444, ECO:0000269|PubMed:32363391, ECO:0000269|PubMed:32366695, ECO:0000269|PubMed:32979942 |
Chain | Residue | Details |
A | TYR170 | |
B | ASN331 | |
B | ASN343 | |
B | ASN616 | |
B | ASN657 | |
B | ASN1098 | |
C | TYR170 | |
C | ASN282 | |
C | ASN331 | |
C | ASN343 | |
C | ASN616 | |
A | ASN282 | |
C | ASN657 | |
C | ASN1098 | |
J | TYR170 | |
J | ASN282 | |
J | ASN331 | |
J | ASN343 | |
J | ASN616 | |
J | ASN657 | |
J | ASN1098 | |
K | TYR170 | |
A | ASN331 | |
K | ASN282 | |
K | ASN331 | |
K | ASN343 | |
K | ASN616 | |
K | ASN657 | |
K | ASN1098 | |
L | TYR170 | |
L | ASN282 | |
L | ASN331 | |
L | ASN343 | |
A | ASN343 | |
L | ASN616 | |
L | ASN657 | |
L | ASN1098 | |
A | ASN616 | |
A | ASN657 | |
A | ASN1098 | |
B | TYR170 | |
B | ASN282 |
site_id | SWS_FT_FI7 |
Number of Residues | 12 |
Details | CARBOHYD: N-linked (GlcNAc...) (high mannose) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32155444, ECO:0000269|PubMed:32363391, ECO:0000269|PubMed:32366695, ECO:0000269|PubMed:32979942 |
Chain | Residue | Details |
A | ASN234 | |
K | ASN709 | |
L | ASN234 | |
L | ASN709 | |
A | ASN709 | |
B | ASN234 | |
B | ASN709 | |
C | ASN234 | |
C | ASN709 | |
J | ASN234 | |
J | ASN709 | |
K | ASN234 |
site_id | SWS_FT_FI8 |
Number of Residues | 6 |
Details | CARBOHYD: O-linked (GalNAc) threonine; by host => ECO:0000269|PubMed:32363391 |
Chain | Residue | Details |
A | THR323 | |
B | THR323 | |
C | THR323 | |
J | THR323 | |
K | THR323 | |
L | THR323 |
site_id | SWS_FT_FI9 |
Number of Residues | 6 |
Details | CARBOHYD: O-linked (HexNAc...) serine; by host => ECO:0000269|PubMed:32363391 |
Chain | Residue | Details |
A | SER325 | |
B | SER325 | |
C | SER325 | |
J | SER325 | |
K | SER325 | |
L | SER325 |
site_id | SWS_FT_FI10 |
Number of Residues | 6 |
Details | CARBOHYD: N-linked (GlcNAc...) (hybrid) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32155444, ECO:0000269|PubMed:32366695, ECO:0000269|PubMed:32979942 |
Chain | Residue | Details |
A | ASN603 | |
B | ASN603 | |
C | ASN603 | |
J | ASN603 | |
K | ASN603 | |
L | ASN603 |
site_id | SWS_FT_FI11 |
Number of Residues | 12 |
Details | CARBOHYD: O-linked (GlcNAc...) threonine; by host GALNT1 => ECO:0000269|PubMed:34732583 |
Chain | Residue | Details |
A | THR676 | |
K | THR678 | |
L | THR676 | |
L | THR678 | |
A | THR678 | |
B | THR676 | |
B | THR678 | |
C | THR676 | |
C | THR678 | |
J | THR676 | |
J | THR678 | |
K | THR676 |
site_id | SWS_FT_FI12 |
Number of Residues | 6 |
Details | CARBOHYD: N-linked (GlcNAc...) (complex) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32155444, ECO:0000269|PubMed:32366695, ECO:0000269|PubMed:32979942 |
Chain | Residue | Details |
A | ASN1134 | |
B | ASN1134 | |
C | ASN1134 | |
J | ASN1134 | |
K | ASN1134 | |
L | ASN1134 |