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7VOP

Cryo-EM structure of Xenopus laevis nuclear pore complex cytoplasmic ring subunit

This is a non-PDB format compatible entry.
Functional Information from GO Data
ChainGOidnamespacecontents
A0005634cellular_componentnucleus
A0005643cellular_componentnuclear pore
A0005829cellular_componentcytosol
A0006406biological_processmRNA export from nucleus
A0006606biological_processprotein import into nucleus
A0015031biological_processprotein transport
A0016020cellular_componentmembrane
A0017056molecular_functionstructural constituent of nuclear pore
A0031080cellular_componentnuclear pore outer ring
A0031965cellular_componentnuclear membrane
A0045893biological_processpositive regulation of DNA-templated transcription
A0051028biological_processmRNA transport
A0072006biological_processnephron development
B0005634cellular_componentnucleus
B0005829cellular_componentcytosol
B0031080cellular_componentnuclear pore outer ring
C0000775cellular_componentchromosome, centromeric region
C0000776cellular_componentkinetochore
C0005198molecular_functionstructural molecule activity
C0005634cellular_componentnucleus
C0005643cellular_componentnuclear pore
C0005694cellular_componentchromosome
C0005764cellular_componentlysosome
C0005765cellular_componentlysosomal membrane
C0005829cellular_componentcytosol
C0006999biological_processnuclear pore organization
C0007059biological_processchromosome segregation
C0007080biological_processmitotic metaphase chromosome alignment
C0015031biological_processprotein transport
C0016020cellular_componentmembrane
C0031080cellular_componentnuclear pore outer ring
C0031669biological_processcellular response to nutrient levels
C0034198biological_processcellular response to amino acid starvation
C0035859cellular_componentSeh1-associated complex
C0051028biological_processmRNA transport
C0051301biological_processcell division
C0051315biological_processattachment of mitotic spindle microtubules to kinetochore
C0061700cellular_componentGATOR2 complex
C1904263biological_processpositive regulation of TORC1 signaling
D0005634cellular_componentnucleus
D0005643cellular_componentnuclear pore
D0006913biological_processnucleocytoplasmic transport
E0000775cellular_componentchromosome, centromeric region
E0000776cellular_componentkinetochore
E0005634cellular_componentnucleus
E0005643cellular_componentnuclear pore
E0005694cellular_componentchromosome
E0005829cellular_componentcytosol
E0007059biological_processchromosome segregation
E0015031biological_processprotein transport
E0031080cellular_componentnuclear pore outer ring
E0051028biological_processmRNA transport
E0051301biological_processcell division
G0005198molecular_functionstructural molecule activity
G0005634cellular_componentnucleus
G0005643cellular_componentnuclear pore
G0005764cellular_componentlysosome
G0005765cellular_componentlysosomal membrane
G0005829cellular_componentcytosol
G0006606biological_processprotein import into nucleus
G0015031biological_processprotein transport
G0030127cellular_componentCOPII vesicle coat
G0031080cellular_componentnuclear pore outer ring
G0032008biological_processpositive regulation of TOR signaling
G0032527biological_processprotein exit from endoplasmic reticulum
G0051028biological_processmRNA transport
G0090114biological_processCOPII-coated vesicle budding
H0000775cellular_componentchromosome, centromeric region
H0000776cellular_componentkinetochore
H0000973biological_processpost-transcriptional tethering of RNA polymerase II gene DNA at nuclear periphery
H0005634cellular_componentnucleus
H0005643cellular_componentnuclear pore
H0005694cellular_componentchromosome
H0005829cellular_componentcytosol
H0006406biological_processmRNA export from nucleus
H0006606biological_processprotein import into nucleus
H0015031biological_processprotein transport
H0016020cellular_componentmembrane
H0017056molecular_functionstructural constituent of nuclear pore
H0031080cellular_componentnuclear pore outer ring
H0031965cellular_componentnuclear membrane
H0051028biological_processmRNA transport
I0000775cellular_componentchromosome, centromeric region
I0000776cellular_componentkinetochore
I0000972biological_processtranscription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery
I0005634cellular_componentnucleus
I0005643cellular_componentnuclear pore
I0005694cellular_componentchromosome
I0005829cellular_componentcytosol
I0006606biological_processprotein import into nucleus
I0015031biological_processprotein transport
I0016973biological_processpoly(A)+ mRNA export from nucleus
I0017056molecular_functionstructural constituent of nuclear pore
I0031080cellular_componentnuclear pore outer ring
I0048513biological_processanimal organ development
I0048731biological_processsystem development
I0051028biological_processmRNA transport
J0005634cellular_componentnucleus
J0005643cellular_componentnuclear pore
J0005829cellular_componentcytosol
J0006406biological_processmRNA export from nucleus
J0006606biological_processprotein import into nucleus
J0015031biological_processprotein transport
J0016020cellular_componentmembrane
J0017056molecular_functionstructural constituent of nuclear pore
J0031080cellular_componentnuclear pore outer ring
J0031965cellular_componentnuclear membrane
J0045893biological_processpositive regulation of DNA-templated transcription
J0051028biological_processmRNA transport
J0072006biological_processnephron development
K0005634cellular_componentnucleus
K0005829cellular_componentcytosol
K0031080cellular_componentnuclear pore outer ring
L0000775cellular_componentchromosome, centromeric region
L0000776cellular_componentkinetochore
L0005198molecular_functionstructural molecule activity
L0005634cellular_componentnucleus
L0005643cellular_componentnuclear pore
L0005694cellular_componentchromosome
L0005764cellular_componentlysosome
L0005765cellular_componentlysosomal membrane
L0005829cellular_componentcytosol
L0006999biological_processnuclear pore organization
L0007059biological_processchromosome segregation
L0007080biological_processmitotic metaphase chromosome alignment
L0015031biological_processprotein transport
L0016020cellular_componentmembrane
L0031080cellular_componentnuclear pore outer ring
L0031669biological_processcellular response to nutrient levels
L0034198biological_processcellular response to amino acid starvation
L0035859cellular_componentSeh1-associated complex
L0051028biological_processmRNA transport
L0051301biological_processcell division
L0051315biological_processattachment of mitotic spindle microtubules to kinetochore
L0061700cellular_componentGATOR2 complex
L1904263biological_processpositive regulation of TORC1 signaling
M0005634cellular_componentnucleus
M0005643cellular_componentnuclear pore
M0006913biological_processnucleocytoplasmic transport
N0000775cellular_componentchromosome, centromeric region
N0000776cellular_componentkinetochore
N0005634cellular_componentnucleus
N0005643cellular_componentnuclear pore
N0005694cellular_componentchromosome
N0005829cellular_componentcytosol
N0007059biological_processchromosome segregation
N0015031biological_processprotein transport
N0031080cellular_componentnuclear pore outer ring
N0051028biological_processmRNA transport
N0051301biological_processcell division
P0005198molecular_functionstructural molecule activity
P0005634cellular_componentnucleus
P0005643cellular_componentnuclear pore
P0005764cellular_componentlysosome
P0005765cellular_componentlysosomal membrane
P0005829cellular_componentcytosol
P0006606biological_processprotein import into nucleus
P0015031biological_processprotein transport
P0030127cellular_componentCOPII vesicle coat
P0031080cellular_componentnuclear pore outer ring
P0032008biological_processpositive regulation of TOR signaling
P0032527biological_processprotein exit from endoplasmic reticulum
P0051028biological_processmRNA transport
P0090114biological_processCOPII-coated vesicle budding
Q0000775cellular_componentchromosome, centromeric region
Q0000776cellular_componentkinetochore
Q0000973biological_processpost-transcriptional tethering of RNA polymerase II gene DNA at nuclear periphery
Q0005634cellular_componentnucleus
Q0005643cellular_componentnuclear pore
Q0005694cellular_componentchromosome
Q0005829cellular_componentcytosol
Q0006406biological_processmRNA export from nucleus
Q0006606biological_processprotein import into nucleus
Q0015031biological_processprotein transport
Q0016020cellular_componentmembrane
Q0017056molecular_functionstructural constituent of nuclear pore
Q0031080cellular_componentnuclear pore outer ring
Q0031965cellular_componentnuclear membrane
Q0051028biological_processmRNA transport
R0000775cellular_componentchromosome, centromeric region
R0000776cellular_componentkinetochore
R0000972biological_processtranscription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery
R0005634cellular_componentnucleus
R0005643cellular_componentnuclear pore
R0005694cellular_componentchromosome
R0005829cellular_componentcytosol
R0006606biological_processprotein import into nucleus
R0015031biological_processprotein transport
R0016973biological_processpoly(A)+ mRNA export from nucleus
R0017056molecular_functionstructural constituent of nuclear pore
R0031080cellular_componentnuclear pore outer ring
R0048513biological_processanimal organ development
R0048731biological_processsystem development
R0051028biological_processmRNA transport
S0005634cellular_componentnucleus
S0005643cellular_componentnuclear pore
S0006913biological_processnucleocytoplasmic transport
S0006999biological_processnuclear pore organization
S0017056molecular_functionstructural constituent of nuclear pore
S0044611cellular_componentnuclear pore inner ring
T0005634cellular_componentnucleus
T0005643cellular_componentnuclear pore
T0006913biological_processnucleocytoplasmic transport
T0006999biological_processnuclear pore organization
T0017056molecular_functionstructural constituent of nuclear pore
T0044611cellular_componentnuclear pore inner ring
U0005634cellular_componentnucleus
U0005643cellular_componentnuclear pore
U0005829cellular_componentcytosol
U0006606biological_processprotein import into nucleus
U0015031biological_processprotein transport
U0016020cellular_componentmembrane
U0016973biological_processpoly(A)+ mRNA export from nucleus
U0017056molecular_functionstructural constituent of nuclear pore
U0031965cellular_componentnuclear membrane
U0034399cellular_componentnuclear periphery
U0051028biological_processmRNA transport
U0051292biological_processnuclear pore complex assembly
V0046907biological_processintracellular transport
W0046907biological_processintracellular transport
X0046907biological_processintracellular transport
Y0046907biological_processintracellular transport
Z0046907biological_processintracellular transport
a0005634cellular_componentnucleus
a0005643cellular_componentnuclear pore
a0006405biological_processRNA export from nucleus
a0006406biological_processmRNA export from nucleus
a0006606biological_processprotein import into nucleus
a0006886biological_processintracellular protein transport
a0008139molecular_functionnuclear localization sequence binding
a0015031biological_processprotein transport
a0017056molecular_functionstructural constituent of nuclear pore
a0051028biological_processmRNA transport
b0000055biological_processribosomal large subunit export from nucleus
b0000056biological_processribosomal small subunit export from nucleus
b0005634cellular_componentnucleus
b0005643cellular_componentnuclear pore
b0006406biological_processmRNA export from nucleus
b0006606biological_processprotein import into nucleus
b0006913biological_processnucleocytoplasmic transport
b0015031biological_processprotein transport
b0017056molecular_functionstructural constituent of nuclear pore
b0051028biological_processmRNA transport
c0000922cellular_componentspindle pole
c0005515molecular_functionprotein binding
c0005543molecular_functionphospholipid binding
c0005634cellular_componentnucleus
c0005643cellular_componentnuclear pore
c0005737cellular_componentcytoplasm
c0005813cellular_componentcentrosome
c0005829cellular_componentcytosol
c0005856cellular_componentcytoskeleton
c0006405biological_processRNA export from nucleus
c0006606biological_processprotein import into nucleus
c0015031biological_processprotein transport
c0017056molecular_functionstructural constituent of nuclear pore
c0031965cellular_componentnuclear membrane
c0044613cellular_componentnuclear pore central transport channel
c0051028biological_processmRNA transport
d0000055biological_processribosomal large subunit export from nucleus
d0000056biological_processribosomal small subunit export from nucleus
d0005634cellular_componentnucleus
d0005643cellular_componentnuclear pore
d0006406biological_processmRNA export from nucleus
d0006606biological_processprotein import into nucleus
d0006913biological_processnucleocytoplasmic transport
d0015031biological_processprotein transport
d0017056molecular_functionstructural constituent of nuclear pore
d0051028biological_processmRNA transport
e0005634cellular_componentnucleus
e0005643cellular_componentnuclear pore
e0006405biological_processRNA export from nucleus
e0006406biological_processmRNA export from nucleus
e0006606biological_processprotein import into nucleus
e0006886biological_processintracellular protein transport
e0008139molecular_functionnuclear localization sequence binding
e0015031biological_processprotein transport
e0017056molecular_functionstructural constituent of nuclear pore
e0051028biological_processmRNA transport
f0000922cellular_componentspindle pole
f0005515molecular_functionprotein binding
f0005543molecular_functionphospholipid binding
f0005634cellular_componentnucleus
f0005643cellular_componentnuclear pore
f0005737cellular_componentcytoplasm
f0005813cellular_componentcentrosome
f0005829cellular_componentcytosol
f0005856cellular_componentcytoskeleton
f0006405biological_processRNA export from nucleus
f0006606biological_processprotein import into nucleus
f0015031biological_processprotein transport
f0017056molecular_functionstructural constituent of nuclear pore
f0031965cellular_componentnuclear membrane
f0044613cellular_componentnuclear pore central transport channel
f0051028biological_processmRNA transport
Functional Information from PROSITE/UniProt
site_idPS00616
Number of Residues15
DetailsHIS_ACID_PHOSPHAT_1 Histidine acid phosphatases phosphohistidine signature. LlyAfhIyRHNyRkA
ChainResidueDetails
DLEU1082-ALA1096

site_idPS00678
Number of Residues15
DetailsWD_REPEATS_1 Trp-Asp (WD) repeats signature. VATGgqDgMLCIWDV
ChainResidueDetails
BVAL230-VAL244
EILE140-LEU154

site_idPS01358
Number of Residues20
DetailsZF_RANBP2_1 Zinc finger RanBP2-type signature. WqCdc..ClatNaptstsCvcC
ChainResidueDetails
VTRP1349-CYS1368
VTRP1413-CYS1432
VTRP1474-CYS1493
VTRP1534-CYS1553
VTRP1594-CYS1613
VTRP1661-CYS1680

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI2
Number of Residues78
DetailsRepeat: {"description":"WD 1"}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues82
DetailsRepeat: {"description":"WD 2"}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues82
DetailsRepeat: {"description":"WD 3"}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues100
DetailsRepeat: {"description":"WD 4"}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues82
DetailsRepeat: {"description":"WD 5"}
ChainResidueDetails

site_idSWS_FT_FI7
Number of Residues78
DetailsRepeat: {"description":"WD 6"}
ChainResidueDetails

239149

PDB entries from 2025-07-23

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