7V89
Cryo-EM structure of SARS-CoV-2 S-Delta variant (B.1.617.2) in complex with Angiotensin-converting enzyme 2 (ACE2) ectodomain, three ACE2-bound form conformation 1
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0016020 | cellular_component | membrane |
A | 0019031 | cellular_component | viral envelope |
A | 0019064 | biological_process | fusion of virus membrane with host plasma membrane |
A | 0039654 | biological_process | fusion of virus membrane with host endosome membrane |
A | 0046813 | biological_process | receptor-mediated virion attachment to host cell |
A | 0055036 | cellular_component | virion membrane |
A | 0075509 | biological_process | endocytosis involved in viral entry into host cell |
B | 0016020 | cellular_component | membrane |
B | 0019031 | cellular_component | viral envelope |
B | 0019064 | biological_process | fusion of virus membrane with host plasma membrane |
B | 0039654 | biological_process | fusion of virus membrane with host endosome membrane |
B | 0046813 | biological_process | receptor-mediated virion attachment to host cell |
B | 0055036 | cellular_component | virion membrane |
B | 0075509 | biological_process | endocytosis involved in viral entry into host cell |
C | 0016020 | cellular_component | membrane |
C | 0019031 | cellular_component | viral envelope |
C | 0019064 | biological_process | fusion of virus membrane with host plasma membrane |
C | 0039654 | biological_process | fusion of virus membrane with host endosome membrane |
C | 0046813 | biological_process | receptor-mediated virion attachment to host cell |
C | 0055036 | cellular_component | virion membrane |
C | 0075509 | biological_process | endocytosis involved in viral entry into host cell |
F | 0006091 | biological_process | generation of precursor metabolites and energy |
F | 0006508 | biological_process | proteolysis |
F | 0008218 | biological_process | bioluminescence |
F | 0008237 | molecular_function | metallopeptidase activity |
F | 0008241 | molecular_function | peptidyl-dipeptidase activity |
F | 0016020 | cellular_component | membrane |
G | 0006091 | biological_process | generation of precursor metabolites and energy |
G | 0006508 | biological_process | proteolysis |
G | 0008218 | biological_process | bioluminescence |
G | 0008237 | molecular_function | metallopeptidase activity |
G | 0008241 | molecular_function | peptidyl-dipeptidase activity |
G | 0016020 | cellular_component | membrane |
H | 0006091 | biological_process | generation of precursor metabolites and energy |
H | 0006508 | biological_process | proteolysis |
H | 0008218 | biological_process | bioluminescence |
H | 0008237 | molecular_function | metallopeptidase activity |
H | 0008241 | molecular_function | peptidyl-dipeptidase activity |
H | 0016020 | cellular_component | membrane |
Functional Information from PROSITE/UniProt
site_id | PS00142 |
Number of Residues | 10 |
Details | ZINC_PROTEASE Neutral zinc metallopeptidases, zinc-binding region signature. TAHHEMGHIQ |
Chain | Residue | Details |
F | THR371-GLN380 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 3 |
Details | ACT_SITE: Proton acceptor => ECO:0000255|PROSITE-ProRule:PRU01355, ECO:0000305|PubMed:14754895, ECO:0000305|PubMed:27217402 |
Chain | Residue | Details |
H | GLU375 | |
F | GLU375 | |
G | GLU375 |
site_id | SWS_FT_FI2 |
Number of Residues | 3 |
Details | ACT_SITE: Proton donor => ECO:0000255|PROSITE-ProRule:PRU01355, ECO:0000305|PubMed:14754895 |
Chain | Residue | Details |
H | HIS505 | |
F | HIS505 | |
G | HIS505 |
site_id | SWS_FT_FI3 |
Number of Residues | 9 |
Details | BINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU01355, ECO:0000269|PubMed:14754895, ECO:0000305|PubMed:19021774 |
Chain | Residue | Details |
F | ARG169 | |
F | TRP477 | |
F | LYS481 | |
G | ARG169 | |
G | TRP477 | |
G | LYS481 | |
H | ARG169 | |
H | TRP477 | |
H | LYS481 |
site_id | SWS_FT_FI4 |
Number of Residues | 9 |
Details | BINDING: BINDING => ECO:0000305|PubMed:14754895 |
Chain | Residue | Details |
B | THR1074 | |
C | ASN61 | |
C | ASN122 | |
C | THR717 | |
C | SER801 | |
C | THR1074 | |
F | ARG273 | |
F | HIS345 | |
F | TYR515 | |
G | ARG273 | |
G | HIS345 | |
G | TYR515 | |
H | ARG273 | |
H | HIS345 | |
H | TYR515 |
site_id | SWS_FT_FI5 |
Number of Residues | 9 |
Details | BINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU01355, ECO:0000269|PubMed:14754895 |
Chain | Residue | Details |
G | HIS378 | |
G | GLU402 | |
H | HIS374 | |
H | HIS378 | |
H | GLU402 | |
F | HIS374 | |
F | HIS378 | |
F | GLU402 | |
G | HIS374 |
site_id | SWS_FT_FI6 |
Number of Residues | 6 |
Details | CARBOHYD: N-linked (GlcNAc...) asparagine => ECO:0000305|PubMed:14754895 |
Chain | Residue | Details |
C | THR616 | |
C | SER657 | |
C | THR1098 | |
F | ASN322 | |
G | ASN53 | |
G | ASN322 | |
H | ASN53 | |
H | ASN322 | |
A | THR1098 | |
B | THR165 | |
B | THR282 | |
B | THR331 | |
B | THR343 | |
B | THR616 | |
B | SER657 | |
B | THR1098 | |
C | THR165 | |
C | THR282 | |
C | THR331 | |
C | THR343 | |
F | ASN53 |
site_id | SWS_FT_FI7 |
Number of Residues | 3 |
Details | CARBOHYD: N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:14754895, ECO:0000269|PubMed:15084671, ECO:0000269|PubMed:19901337 |
Chain | Residue | Details |
B | SER709 | |
C | THR234 | |
C | SER709 | |
F | ASN90 | |
G | ASN90 | |
H | ASN90 |
site_id | SWS_FT_FI8 |
Number of Residues | 6 |
Details | CARBOHYD: N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:14754895 |
Chain | Residue | Details |
F | ASN103 | |
F | ASN432 | |
G | ASN103 | |
G | ASN432 | |
H | ASN103 | |
H | ASN432 |
site_id | SWS_FT_FI9 |
Number of Residues | 3 |
Details | CARBOHYD: N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:14754895, ECO:0000269|PubMed:19159218, ECO:0000269|PubMed:19901337 |
Chain | Residue | Details |
F | ASN546 | |
G | ASN546 | |
H | ASN546 |
site_id | SWS_FT_FI10 |
Number of Residues | 3 |
Details | CARBOHYD: N-linked (GlcNAc...) (hybrid) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32155444, ECO:0000269|PubMed:32366695, ECO:0000269|PubMed:32979942 |
Chain | Residue | Details |
A | SER603 | |
B | SER603 | |
C | SER603 |
site_id | SWS_FT_FI11 |
Number of Residues | 6 |
Details | CARBOHYD: O-linked (GlcNAc...) threonine; by host GALNT1 => ECO:0000269|PubMed:34732583 |
Chain | Residue | Details |
B | SER678 | |
C | THR676 | |
C | SER678 | |
A | THR676 | |
A | SER678 | |
B | THR676 |
site_id | SWS_FT_FI12 |
Number of Residues | 3 |
Details | CARBOHYD: N-linked (GlcNAc...) (complex) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32155444, ECO:0000269|PubMed:32366695, ECO:0000269|PubMed:32979942 |
Chain | Residue | Details |
A | THR1134 | |
B | THR1134 | |
C | THR1134 |