Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

7V2Y

cryo-EM structure of yeast THO complex with Sub2

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000445	cellular_component	THO complex part of transcription export complex
A	0000446	cellular_component	nucleoplasmic THO complex
A	0000781	cellular_component	chromosome, telomeric region
A	0003676	molecular_function	nucleic acid binding
A	0005515	molecular_function	protein binding
A	0005634	cellular_component	nucleus
A	0006283	biological_process	transcription-coupled nucleotide-excision repair
A	0006310	biological_process	DNA recombination
A	0006351	biological_process	DNA-templated transcription
A	0006368	biological_process	transcription elongation by RNA polymerase II
A	0006406	biological_process	mRNA export from nucleus
A	0016593	cellular_component	Cdc73/Paf1 complex
A	0031124	biological_process	mRNA 3'-end processing
A	0045943	biological_process	positive regulation of transcription by RNA polymerase I
A	0060090	molecular_function	molecular adaptor activity
A	2001209	biological_process	positive regulation of transcription elongation by RNA polymerase I
B	0000347	cellular_component	THO complex
B	0000445	cellular_component	THO complex part of transcription export complex
B	0000446	cellular_component	nucleoplasmic THO complex
B	0000781	cellular_component	chromosome, telomeric region
B	0003676	molecular_function	nucleic acid binding
B	0003729	molecular_function	mRNA binding
B	0005515	molecular_function	protein binding
B	0005634	cellular_component	nucleus
B	0006283	biological_process	transcription-coupled nucleotide-excision repair
B	0006310	biological_process	DNA recombination
B	0006351	biological_process	DNA-templated transcription
B	0006368	biological_process	transcription elongation by RNA polymerase II
B	0006397	biological_process	mRNA processing
B	0006406	biological_process	mRNA export from nucleus
B	0031124	biological_process	mRNA 3'-end processing
B	0034063	biological_process	stress granule assembly
B	0045943	biological_process	positive regulation of transcription by RNA polymerase I
B	0097185	biological_process	cellular response to azide
B	2001209	biological_process	positive regulation of transcription elongation by RNA polymerase I
C	0000346	cellular_component	transcription export complex
C	0000445	cellular_component	THO complex part of transcription export complex
C	0003729	molecular_function	mRNA binding
C	0005515	molecular_function	protein binding
C	0005634	cellular_component	nucleus
C	0006351	biological_process	DNA-templated transcription
C	0006368	biological_process	transcription elongation by RNA polymerase II
C	0006406	biological_process	mRNA export from nucleus
D	0000445	cellular_component	THO complex part of transcription export complex
D	0000446	cellular_component	nucleoplasmic THO complex
D	0000781	cellular_component	chromosome, telomeric region
D	0003676	molecular_function	nucleic acid binding
D	0005515	molecular_function	protein binding
D	0005634	cellular_component	nucleus
D	0006310	biological_process	DNA recombination
D	0006351	biological_process	DNA-templated transcription
D	0006368	biological_process	transcription elongation by RNA polymerase II
D	0006397	biological_process	mRNA processing
D	0006406	biological_process	mRNA export from nucleus
D	0060090	molecular_function	molecular adaptor activity
E	0000445	cellular_component	THO complex part of transcription export complex
E	0000446	cellular_component	nucleoplasmic THO complex
E	0003676	molecular_function	nucleic acid binding
E	0005515	molecular_function	protein binding
E	0005634	cellular_component	nucleus
E	0006310	biological_process	DNA recombination
E	0006351	biological_process	DNA-templated transcription
E	0006368	biological_process	transcription elongation by RNA polymerase II
E	0006406	biological_process	mRNA export from nucleus
E	0034063	biological_process	stress granule assembly
E	0097185	biological_process	cellular response to azide
F	0000166	molecular_function	nucleotide binding
F	0000346	cellular_component	transcription export complex
F	0000398	biological_process	mRNA splicing, via spliceosome
F	0000781	cellular_component	chromosome, telomeric region
F	0003676	molecular_function	nucleic acid binding
F	0003723	molecular_function	RNA binding
F	0003724	molecular_function	RNA helicase activity
F	0003729	molecular_function	mRNA binding
F	0004386	molecular_function	helicase activity
F	0005515	molecular_function	protein binding
F	0005524	molecular_function	ATP binding
F	0005634	cellular_component	nucleus
F	0005681	cellular_component	spliceosomal complex
F	0005737	cellular_component	cytoplasm
F	0006283	biological_process	transcription-coupled nucleotide-excision repair
F	0006368	biological_process	transcription elongation by RNA polymerase II
F	0006397	biological_process	mRNA processing
F	0006406	biological_process	mRNA export from nucleus
F	0008380	biological_process	RNA splicing
F	0010467	biological_process	gene expression
F	0016787	molecular_function	hydrolase activity
F	0016887	molecular_function	ATP hydrolysis activity
F	0031124	biological_process	mRNA 3'-end processing
F	0031509	biological_process	subtelomeric heterochromatin formation
F	0042802	molecular_function	identical protein binding
F	0051028	biological_process	mRNA transport

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	1
Details	Modified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"17330950","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"18407956","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"19779198","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

site_id	SWS_FT_FI2
Number of Residues	39
Details	Repeat: {"description":"WD 1"}

Chain

Residue

Details

site_id	SWS_FT_FI3
Number of Residues	39
Details	Repeat: {"description":"WD 2"}

Chain

Residue

Details

site_id	SWS_FT_FI4
Number of Residues	39
Details	Repeat: {"description":"WD 3"}

Chain

Residue

Details

site_id	SWS_FT_FI5
Number of Residues	39
Details	Repeat: {"description":"WD 4"}

Chain

Residue

Details

site_id	SWS_FT_FI6
Number of Residues	39
Details	Repeat: {"description":"WD 5"}

Chain

Residue

Details

site_id	SWS_FT_FI7
Number of Residues	175
Details	Domain: {"description":"Helicase ATP-binding","evidences":[{"source":"PROSITE-ProRule","id":"PRU00541","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

site_id	SWS_FT_FI8
Number of Residues	161
Details	Domain: {"description":"Helicase C-terminal","evidences":[{"source":"PROSITE-ProRule","id":"PRU00542","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

site_id	SWS_FT_FI9
Number of Residues	28
Details	Motif: {"description":"Q motif"}

Chain

Residue

Details

site_id	SWS_FT_FI10
Number of Residues	3
Details	Motif: {"description":"DECD box"}

Chain

Residue

Details

site_id	SWS_FT_FI11
Number of Residues	7
Details	Binding site: {}

Chain

Residue

Details

site_id	SWS_FT_FI12
Number of Residues	1
Details	Modified residue: {"description":"Phosphothreonine","evidences":[{"source":"PubMed","id":"18407956","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)