| Chain | GOid | namespace | contents |
| A | 0000155 | molecular_function | phosphorelay sensor kinase activity |
| A | 0000160 | biological_process | phosphorelay signal transduction system |
| A | 0003677 | molecular_function | DNA binding |
| A | 0005515 | molecular_function | protein binding |
| A | 0005634 | cellular_component | nucleus |
| A | 0005654 | cellular_component | nucleoplasm |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0005829 | cellular_component | cytosol |
| A | 0006325 | biological_process | chromatin organization |
| A | 0006355 | biological_process | regulation of DNA-templated transcription |
| A | 0007165 | biological_process | signal transduction |
| A | 0009266 | biological_process | response to temperature stimulus |
| A | 0009409 | biological_process | response to cold |
| A | 0009584 | biological_process | detection of visible light |
| A | 0009585 | biological_process | red, far-red light phototransduction |
| A | 0009630 | biological_process | gravitropism |
| A | 0009638 | biological_process | phototropism |
| A | 0009640 | biological_process | photomorphogenesis |
| A | 0009649 | biological_process | entrainment of circadian clock |
| A | 0009687 | biological_process | abscisic acid metabolic process |
| A | 0009867 | biological_process | jasmonic acid mediated signaling pathway |
| A | 0009881 | molecular_function | photoreceptor activity |
| A | 0009883 | molecular_function | red or far-red light photoreceptor activity |
| A | 0010017 | biological_process | red or far-red light signaling pathway |
| A | 0010018 | biological_process | far-red light signaling pathway |
| A | 0010029 | biological_process | regulation of seed germination |
| A | 0010148 | biological_process | transpiration |
| A | 0010161 | biological_process | red light signaling pathway |
| A | 0010202 | biological_process | response to low fluence red light stimulus |
| A | 0010218 | biological_process | response to far red light |
| A | 0010244 | biological_process | response to low fluence blue light stimulus by blue low-fluence system |
| A | 0010374 | biological_process | stomatal complex development |
| A | 0010617 | biological_process | circadian regulation of calcium ion oscillation |
| A | 0015979 | biological_process | photosynthesis |
| A | 0016604 | cellular_component | nuclear body |
| A | 0016607 | cellular_component | nuclear speck |
| A | 0017006 | biological_process | protein-tetrapyrrole linkage |
| A | 0017012 | biological_process | protein-phytochromobilin linkage |
| A | 0031347 | biological_process | regulation of defense response |
| A | 0031516 | molecular_function | far-red light photoreceptor activity |
| A | 0031517 | molecular_function | red light photoreceptor activity |
| A | 0042802 | molecular_function | identical protein binding |
| A | 0042803 | molecular_function | protein homodimerization activity |
| A | 0043231 | cellular_component | intracellular membrane-bounded organelle |
| A | 0043565 | molecular_function | sequence-specific DNA binding |
| A | 0045892 | biological_process | negative regulation of DNA-templated transcription |
| A | 1990841 | molecular_function | promoter-specific chromatin binding |
| A | 2000028 | biological_process | regulation of photoperiodism, flowering |
| B | 0000155 | molecular_function | phosphorelay sensor kinase activity |
| B | 0000160 | biological_process | phosphorelay signal transduction system |
| B | 0003677 | molecular_function | DNA binding |
| B | 0005515 | molecular_function | protein binding |
| B | 0005634 | cellular_component | nucleus |
| B | 0005654 | cellular_component | nucleoplasm |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0005829 | cellular_component | cytosol |
| B | 0006325 | biological_process | chromatin organization |
| B | 0006355 | biological_process | regulation of DNA-templated transcription |
| B | 0007165 | biological_process | signal transduction |
| B | 0009266 | biological_process | response to temperature stimulus |
| B | 0009409 | biological_process | response to cold |
| B | 0009584 | biological_process | detection of visible light |
| B | 0009585 | biological_process | red, far-red light phototransduction |
| B | 0009630 | biological_process | gravitropism |
| B | 0009638 | biological_process | phototropism |
| B | 0009640 | biological_process | photomorphogenesis |
| B | 0009649 | biological_process | entrainment of circadian clock |
| B | 0009687 | biological_process | abscisic acid metabolic process |
| B | 0009867 | biological_process | jasmonic acid mediated signaling pathway |
| B | 0009881 | molecular_function | photoreceptor activity |
| B | 0009883 | molecular_function | red or far-red light photoreceptor activity |
| B | 0010017 | biological_process | red or far-red light signaling pathway |
| B | 0010018 | biological_process | far-red light signaling pathway |
| B | 0010029 | biological_process | regulation of seed germination |
| B | 0010148 | biological_process | transpiration |
| B | 0010161 | biological_process | red light signaling pathway |
| B | 0010202 | biological_process | response to low fluence red light stimulus |
| B | 0010218 | biological_process | response to far red light |
| B | 0010244 | biological_process | response to low fluence blue light stimulus by blue low-fluence system |
| B | 0010374 | biological_process | stomatal complex development |
| B | 0010617 | biological_process | circadian regulation of calcium ion oscillation |
| B | 0015979 | biological_process | photosynthesis |
| B | 0016604 | cellular_component | nuclear body |
| B | 0016607 | cellular_component | nuclear speck |
| B | 0017006 | biological_process | protein-tetrapyrrole linkage |
| B | 0017012 | biological_process | protein-phytochromobilin linkage |
| B | 0031347 | biological_process | regulation of defense response |
| B | 0031516 | molecular_function | far-red light photoreceptor activity |
| B | 0031517 | molecular_function | red light photoreceptor activity |
| B | 0042802 | molecular_function | identical protein binding |
| B | 0042803 | molecular_function | protein homodimerization activity |
| B | 0043231 | cellular_component | intracellular membrane-bounded organelle |
| B | 0043565 | molecular_function | sequence-specific DNA binding |
| B | 0045892 | biological_process | negative regulation of DNA-templated transcription |
| B | 1990841 | molecular_function | promoter-specific chromatin binding |
| B | 2000028 | biological_process | regulation of photoperiodism, flowering |
