Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7QVC

TMEM106B filaments with Fold I from Alzheimer's disease (case 1)

Functional Information from GO Data
ChainGOidnamespacecontents
A0003674molecular_functionmolecular_function
A0005515molecular_functionprotein binding
A0005764cellular_componentlysosome
A0005765cellular_componentlysosomal membrane
A0005768cellular_componentendosome
A0005886cellular_componentplasma membrane
A0007040biological_processlysosome organization
A0007041biological_processlysosomal transport
A0007042biological_processlysosomal lumen acidification
A0031902cellular_componentlate endosome membrane
A0032418biological_processlysosome localization
A0048813biological_processdendrite morphogenesis
A0051117molecular_functionATPase binding
A0070050biological_processneuron cellular homeostasis
A1900006biological_processpositive regulation of dendrite development
A1905146biological_processlysosomal protein catabolic process
A1905671biological_processregulation of lysosome organization
B0003674molecular_functionmolecular_function
B0005515molecular_functionprotein binding
B0005764cellular_componentlysosome
B0005765cellular_componentlysosomal membrane
B0005768cellular_componentendosome
B0005886cellular_componentplasma membrane
B0007040biological_processlysosome organization
B0007041biological_processlysosomal transport
B0007042biological_processlysosomal lumen acidification
B0031902cellular_componentlate endosome membrane
B0032418biological_processlysosome localization
B0048813biological_processdendrite morphogenesis
B0051117molecular_functionATPase binding
B0070050biological_processneuron cellular homeostasis
B1900006biological_processpositive regulation of dendrite development
B1905146biological_processlysosomal protein catabolic process
B1905671biological_processregulation of lysosome organization
C0003674molecular_functionmolecular_function
C0005515molecular_functionprotein binding
C0005764cellular_componentlysosome
C0005765cellular_componentlysosomal membrane
C0005768cellular_componentendosome
C0005886cellular_componentplasma membrane
C0007040biological_processlysosome organization
C0007041biological_processlysosomal transport
C0007042biological_processlysosomal lumen acidification
C0031902cellular_componentlate endosome membrane
C0032418biological_processlysosome localization
C0048813biological_processdendrite morphogenesis
C0051117molecular_functionATPase binding
C0070050biological_processneuron cellular homeostasis
C1900006biological_processpositive regulation of dendrite development
C1905146biological_processlysosomal protein catabolic process
C1905671biological_processregulation of lysosome organization
Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues282
DetailsTOPO_DOM: Cytoplasmic => ECO:0000269|PubMed:22511793, ECO:0000269|PubMed:23136129, ECO:0000269|PubMed:25066864
ChainResidueDetails
AGLY2-LEU96
BGLY2-LEU96
CGLY2-LEU96

site_idSWS_FT_FI2
Number of Residues60
DetailsTRANSMEM: Helical => ECO:0000255
ChainResidueDetails
ATYR97-PHE117
BTYR97-PHE117
CTYR97-PHE117

site_idSWS_FT_FI3
Number of Residues468
DetailsTOPO_DOM: Lumenal => ECO:0000269|PubMed:22511793, ECO:0000269|PubMed:23136129, ECO:0000269|PubMed:25066864
ChainResidueDetails
APRO118-GLN274
BPRO118-GLN274
CPRO118-GLN274

site_idSWS_FT_FI4
Number of Residues3
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:17081983, ECO:0007744|PubMed:20068231, ECO:0007744|PubMed:23186163
ChainResidueDetails
ASER33
BSER33
CSER33

site_idSWS_FT_FI5
Number of Residues3
DetailsLIPID: N-myristoyl glycine => ECO:0000269|PubMed:25255805
ChainResidueDetails
AGLY2
BGLY2
CGLY2

site_idSWS_FT_FI6
Number of Residues12
DetailsCARBOHYD: N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:22511793
ChainResidueDetails
AASN145
AASN151
AASN164
AASN256
BASN145
BASN151
BASN164
BASN256
CASN145
CASN151
CASN164
CASN256

site_idSWS_FT_FI7
Number of Residues3
DetailsCARBOHYD: N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:19159218, ECO:0000269|PubMed:22511793, ECO:0000269|PubMed:23742080
ChainResidueDetails
AASN183
BASN183
CASN183

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon