7PSX
Structure of HOXB13 bound to hydroxymethylated DNA
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000981 | molecular_function | DNA-binding transcription factor activity, RNA polymerase II-specific |
A | 0003677 | molecular_function | DNA binding |
A | 0006355 | biological_process | regulation of DNA-templated transcription |
B | 0000981 | molecular_function | DNA-binding transcription factor activity, RNA polymerase II-specific |
B | 0003677 | molecular_function | DNA binding |
B | 0006355 | biological_process | regulation of DNA-templated transcription |
G | 0000981 | molecular_function | DNA-binding transcription factor activity, RNA polymerase II-specific |
G | 0003677 | molecular_function | DNA binding |
G | 0006355 | biological_process | regulation of DNA-templated transcription |
J | 0000981 | molecular_function | DNA-binding transcription factor activity, RNA polymerase II-specific |
J | 0003677 | molecular_function | DNA binding |
J | 0006355 | biological_process | regulation of DNA-templated transcription |
Functional Information from PROSITE/UniProt
site_id | PS00027 |
Number of Residues | 24 |
Details | HOMEOBOX_1 'Homeobox' domain signature. ISaaTsLSerQITIWFqNrrvkeK |
Chain | Residue | Details |
A | ILE249-LYS272 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 70 |
Details | Region: {"description":"Interaction with DNA","evidences":[{"source":"PubMed","id":"28473536","evidenceCode":"ECO:0000305"},{"source":"Reference","evidenceCode":"ECO:0000305","citation":{"citationType":"submission","publicationDate":"OCT-2015","submissionDatabase":"PDB data bank","title":"Molecular basis of recognition of two distinct DNA sequences by a single transcription factor.","authors":["Morgunova E.","Yin Y.","Jolma A.","Popov A.","Taipale J."]}}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI2 |
Number of Residues | 44 |
Details | Region: {"description":"Interaction with 5-mCpG DNA","evidences":[{"source":"PubMed","id":"28473536","evidenceCode":"ECO:0000305"}]} |
Chain | Residue | Details |