7PIL

Cryo-EM structure of the Rhodobacter sphaeroides RC-LH1-PufXY monomer complex at 2.5 A

This is a non-PDB format compatible entry.

Functional Information from GO Data

Chain	GOid	namespace	contents
AA	0005886	cellular_component	plasma membrane
AA	0016020	cellular_component	membrane
AA	0019684	biological_process	photosynthesis, light reaction
AA	0019866	cellular_component	organelle inner membrane
AA	0030076	cellular_component	light-harvesting complex
AA	0030077	cellular_component	plasma membrane light-harvesting complex
AA	0042314	molecular_function	bacteriochlorophyll binding
AA	0045156	molecular_function	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
AA	0046872	molecular_function	metal ion binding
AB	0005886	cellular_component	plasma membrane
AB	0016020	cellular_component	membrane
AB	0019684	biological_process	photosynthesis, light reaction
AB	0019866	cellular_component	organelle inner membrane
AB	0030076	cellular_component	light-harvesting complex
AB	0030077	cellular_component	plasma membrane light-harvesting complex
AB	0042314	molecular_function	bacteriochlorophyll binding
AB	0045156	molecular_function	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
AB	0046872	molecular_function	metal ion binding
AC	0005886	cellular_component	plasma membrane
AC	0016020	cellular_component	membrane
AC	0019684	biological_process	photosynthesis, light reaction
AC	0019866	cellular_component	organelle inner membrane
AC	0030076	cellular_component	light-harvesting complex
AC	0030077	cellular_component	plasma membrane light-harvesting complex
AC	0042314	molecular_function	bacteriochlorophyll binding
AC	0045156	molecular_function	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
AC	0046872	molecular_function	metal ion binding
AD	0005886	cellular_component	plasma membrane
AD	0016020	cellular_component	membrane
AD	0019684	biological_process	photosynthesis, light reaction
AD	0019866	cellular_component	organelle inner membrane
AD	0030076	cellular_component	light-harvesting complex
AD	0030077	cellular_component	plasma membrane light-harvesting complex
AD	0042314	molecular_function	bacteriochlorophyll binding
AD	0045156	molecular_function	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
AD	0046872	molecular_function	metal ion binding
AE	0005886	cellular_component	plasma membrane
AE	0016020	cellular_component	membrane
AE	0019684	biological_process	photosynthesis, light reaction
AE	0019866	cellular_component	organelle inner membrane
AE	0030076	cellular_component	light-harvesting complex
AE	0030077	cellular_component	plasma membrane light-harvesting complex
AE	0042314	molecular_function	bacteriochlorophyll binding
AE	0045156	molecular_function	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
AE	0046872	molecular_function	metal ion binding
AF	0005886	cellular_component	plasma membrane
AF	0016020	cellular_component	membrane
AF	0019684	biological_process	photosynthesis, light reaction
AF	0019866	cellular_component	organelle inner membrane
AF	0030076	cellular_component	light-harvesting complex
AF	0030077	cellular_component	plasma membrane light-harvesting complex
AF	0042314	molecular_function	bacteriochlorophyll binding
AF	0045156	molecular_function	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
AF	0046872	molecular_function	metal ion binding
AG	0005886	cellular_component	plasma membrane
AG	0016020	cellular_component	membrane
AG	0019684	biological_process	photosynthesis, light reaction
AG	0019866	cellular_component	organelle inner membrane
AG	0030076	cellular_component	light-harvesting complex
AG	0030077	cellular_component	plasma membrane light-harvesting complex
AG	0042314	molecular_function	bacteriochlorophyll binding
AG	0045156	molecular_function	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
AG	0046872	molecular_function	metal ion binding
AH	0005886	cellular_component	plasma membrane
AH	0016020	cellular_component	membrane
AH	0019684	biological_process	photosynthesis, light reaction
AH	0019866	cellular_component	organelle inner membrane
AH	0030076	cellular_component	light-harvesting complex
AH	0030077	cellular_component	plasma membrane light-harvesting complex
AH	0042314	molecular_function	bacteriochlorophyll binding
AH	0045156	molecular_function	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
AH	0046872	molecular_function	metal ion binding
AI	0005886	cellular_component	plasma membrane
AI	0016020	cellular_component	membrane
AI	0019684	biological_process	photosynthesis, light reaction
AI	0019866	cellular_component	organelle inner membrane
AI	0030076	cellular_component	light-harvesting complex
AI	0030077	cellular_component	plasma membrane light-harvesting complex
AI	0042314	molecular_function	bacteriochlorophyll binding
AI	0045156	molecular_function	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
AI	0046872	molecular_function	metal ion binding
AJ	0005886	cellular_component	plasma membrane
AJ	0016020	cellular_component	membrane
AJ	0019684	biological_process	photosynthesis, light reaction
AJ	0019866	cellular_component	organelle inner membrane
AJ	0030076	cellular_component	light-harvesting complex
AJ	0030077	cellular_component	plasma membrane light-harvesting complex
AJ	0042314	molecular_function	bacteriochlorophyll binding
AJ	0045156	molecular_function	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
AJ	0046872	molecular_function	metal ion binding
AK	0005886	cellular_component	plasma membrane
AK	0016020	cellular_component	membrane
AK	0019684	biological_process	photosynthesis, light reaction
AK	0019866	cellular_component	organelle inner membrane
AK	0030076	cellular_component	light-harvesting complex
AK	0030077	cellular_component	plasma membrane light-harvesting complex
AK	0042314	molecular_function	bacteriochlorophyll binding
AK	0045156	molecular_function	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
AK	0046872	molecular_function	metal ion binding
AL	0005886	cellular_component	plasma membrane
AL	0016020	cellular_component	membrane
AL	0019684	biological_process	photosynthesis, light reaction
AL	0019866	cellular_component	organelle inner membrane
AL	0030076	cellular_component	light-harvesting complex
AL	0030077	cellular_component	plasma membrane light-harvesting complex
AL	0042314	molecular_function	bacteriochlorophyll binding
AL	0045156	molecular_function	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
AL	0046872	molecular_function	metal ion binding
AM	0005886	cellular_component	plasma membrane
AM	0016020	cellular_component	membrane
AM	0019684	biological_process	photosynthesis, light reaction
AM	0019866	cellular_component	organelle inner membrane
AM	0030076	cellular_component	light-harvesting complex
AM	0030077	cellular_component	plasma membrane light-harvesting complex
AM	0042314	molecular_function	bacteriochlorophyll binding
AM	0045156	molecular_function	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
AM	0046872	molecular_function	metal ion binding
AN	0005886	cellular_component	plasma membrane
AN	0016020	cellular_component	membrane
AN	0019684	biological_process	photosynthesis, light reaction
AN	0019866	cellular_component	organelle inner membrane
AN	0030076	cellular_component	light-harvesting complex
AN	0030077	cellular_component	plasma membrane light-harvesting complex
AN	0042314	molecular_function	bacteriochlorophyll binding
AN	0045156	molecular_function	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
AN	0046872	molecular_function	metal ion binding
BA	0016020	cellular_component	membrane
BA	0019684	biological_process	photosynthesis, light reaction
BA	0030077	cellular_component	plasma membrane light-harvesting complex
BA	0045156	molecular_function	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
BB	0016020	cellular_component	membrane
BB	0019684	biological_process	photosynthesis, light reaction
BB	0030077	cellular_component	plasma membrane light-harvesting complex
BB	0045156	molecular_function	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
BC	0016020	cellular_component	membrane
BC	0019684	biological_process	photosynthesis, light reaction
BC	0030077	cellular_component	plasma membrane light-harvesting complex
BC	0045156	molecular_function	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
BD	0016020	cellular_component	membrane
BD	0019684	biological_process	photosynthesis, light reaction
BD	0030077	cellular_component	plasma membrane light-harvesting complex
BD	0045156	molecular_function	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
BE	0016020	cellular_component	membrane
BE	0019684	biological_process	photosynthesis, light reaction
BE	0030077	cellular_component	plasma membrane light-harvesting complex
BE	0045156	molecular_function	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
BF	0016020	cellular_component	membrane
BF	0019684	biological_process	photosynthesis, light reaction
BF	0030077	cellular_component	plasma membrane light-harvesting complex
BF	0045156	molecular_function	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
BG	0016020	cellular_component	membrane
BG	0019684	biological_process	photosynthesis, light reaction
BG	0030077	cellular_component	plasma membrane light-harvesting complex
BG	0045156	molecular_function	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
BH	0016020	cellular_component	membrane
BH	0019684	biological_process	photosynthesis, light reaction
BH	0030077	cellular_component	plasma membrane light-harvesting complex
BH	0045156	molecular_function	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
BI	0016020	cellular_component	membrane
BI	0019684	biological_process	photosynthesis, light reaction
BI	0030077	cellular_component	plasma membrane light-harvesting complex
BI	0045156	molecular_function	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
BJ	0016020	cellular_component	membrane
BJ	0019684	biological_process	photosynthesis, light reaction
BJ	0030077	cellular_component	plasma membrane light-harvesting complex
BJ	0045156	molecular_function	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
BK	0016020	cellular_component	membrane
BK	0019684	biological_process	photosynthesis, light reaction
BK	0030077	cellular_component	plasma membrane light-harvesting complex
BK	0045156	molecular_function	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
BL	0016020	cellular_component	membrane
BL	0019684	biological_process	photosynthesis, light reaction
BL	0030077	cellular_component	plasma membrane light-harvesting complex
BL	0045156	molecular_function	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
BM	0016020	cellular_component	membrane
BM	0019684	biological_process	photosynthesis, light reaction
BM	0030077	cellular_component	plasma membrane light-harvesting complex
BM	0045156	molecular_function	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
BN	0016020	cellular_component	membrane
BN	0019684	biological_process	photosynthesis, light reaction
BN	0030077	cellular_component	plasma membrane light-harvesting complex
BN	0045156	molecular_function	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
H	0015979	biological_process	photosynthesis
H	0016020	cellular_component	membrane
H	0019684	biological_process	photosynthesis, light reaction
H	0030077	cellular_component	plasma membrane light-harvesting complex
H	0042314	molecular_function	bacteriochlorophyll binding
H	0042717	cellular_component	plasma membrane-derived chromatophore membrane
H	0045156	molecular_function	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
L	0009772	biological_process	photosynthetic electron transport in photosystem II
L	0015979	biological_process	photosynthesis
L	0016020	cellular_component	membrane
L	0019684	biological_process	photosynthesis, light reaction
L	0030077	cellular_component	plasma membrane light-harvesting complex
L	0042314	molecular_function	bacteriochlorophyll binding
L	0042717	cellular_component	plasma membrane-derived chromatophore membrane
L	0045156	molecular_function	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
L	0046872	molecular_function	metal ion binding
M	0009772	biological_process	photosynthetic electron transport in photosystem II
M	0015979	biological_process	photosynthesis
M	0016020	cellular_component	membrane
M	0019684	biological_process	photosynthesis, light reaction
M	0030077	cellular_component	plasma membrane light-harvesting complex
M	0042314	molecular_function	bacteriochlorophyll binding
M	0042717	cellular_component	plasma membrane-derived chromatophore membrane
M	0045156	molecular_function	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
M	0046872	molecular_function	metal ion binding
UU	0016020	cellular_component	membrane

Functional Information from PROSITE/UniProt

site_id	PS00041
Number of Residues	40
Details	HTH_ARAC_FAMILY_1 Bacterial regulatory proteins, araC family signature. QMmkGAgwAggvf.....FgTLLLIgFFrvvg.LmlpIQEnqApAP

Chain	Residue	Details
X	GLN26-PRO65

---

site_id	PS00244
Number of Residues	27
Details	REACTION_CENTER Photosynthetic reaction center proteins signature. NlfynPfHglSiaflygsallfAmHGA

Chain	Residue	Details
M	ASN195-ALA221
L	ASN166-ALA192

---

site_id	PS00968
Number of Residues	19
Details	ANTENNA_COMP_ALPHA Antenna complexes alpha subunits signature. LlAVmIHlilLSTpsyNWL

Chain	Residue	Details
AA	LEU26-LEU44

---

site_id	PS00969
Number of Residues	32
Details	ANTENNA_COMP_BETA Antenna complexes beta subunits signature. QaqelHsvymsGlwlFsavAivAHlavyiwrP

Chain	Residue	Details
BM	GLN15-PRO46

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	134
Details	TRANSMEM: Helical => ECO:0000250

Chain	Residue	Details
M	GLY53-GLY79
BJ	LEU27-TRP44
BK	LEU27-TRP44
BL	LEU27-TRP44
BM	LEU27-TRP44
BN	LEU27-TRP44
M	LYS110-ALA139
M	MET142-LEU167
M	PHE197-ALA225
M	ASN259-LEU285
BF	LEU27-TRP44
BG	LEU27-TRP44
BH	LEU27-TRP44
BI	LEU27-TRP44

---

site_id	SWS_FT_FI2
Number of Residues	2
Details	BINDING: axial binding residue => ECO:0000250

Chain	Residue	Details
M	HIS182
BJ	ARG45-PHE48
BK	ARG45-PHE48
BL	ARG45-PHE48
BM	ARG45-PHE48
BN	ARG45-PHE48
M	HIS202
L	HIS116-MET138
L	PRO171-ALA198
L	GLY225-ILE250
BF	ARG45-PHE48
BG	ARG45-PHE48
BH	ARG45-PHE48
BI	ARG45-PHE48

---

site_id	SWS_FT_FI3
Number of Residues	4
Details	BINDING: BINDING => ECO:0000250

Chain	Residue	Details
M	HIS219
BE	HIS38
BF	HIS20
BF	HIS38
BG	HIS20
BG	HIS38
BH	HIS20
BH	HIS38
BI	HIS20
BI	HIS38
BJ	HIS20
M	GLU234
BJ	HIS38
BK	HIS20
BK	HIS38
BL	HIS20
BL	HIS38
BM	HIS20
BM	HIS38
BN	HIS20
BN	HIS38
M	TRP252
M	HIS266
BC	HIS20
BC	HIS38
BD	HIS20
BD	HIS38
BE	HIS20

---

site_id	SWS_FT_FI4
Number of Residues	2
Details	BINDING: axial binding residue => ECO:0000250

Chain	Residue	Details
L	HIS153
L	HIS173

---

site_id	SWS_FT_FI5
Number of Residues	3
Details	BINDING: BINDING => ECO:0000250

Chain	Residue	Details
L	HIS190
L	PHE216
L	HIS230

---