Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

7OHY

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL34 expression shut down, population B

This is a non-PDB format compatible entry.

Functional Information from GO Data

Chain	GOid	namespace	contents
b	0000054	biological_process	ribosomal subunit export from nucleus
b	0003723	molecular_function	RNA binding
b	0003924	molecular_function	GTPase activity
b	0005515	molecular_function	protein binding
b	0005525	molecular_function	GTP binding
b	0005634	cellular_component	nucleus
b	0005730	cellular_component	nucleolus
b	0005737	cellular_component	cytoplasm
b	0006364	biological_process	rRNA processing
b	0030687	cellular_component	preribosome, large subunit precursor
b	0042254	biological_process	ribosome biogenesis
b	0042273	biological_process	ribosomal large subunit biogenesis
b	1902626	biological_process	assembly of large subunit precursor of preribosome
B	0000027	biological_process	ribosomal large subunit assembly
B	0002181	biological_process	cytoplasmic translation
B	0003723	molecular_function	RNA binding
B	0003735	molecular_function	structural constituent of ribosome
B	0005515	molecular_function	protein binding
B	0005737	cellular_component	cytoplasm
B	0005829	cellular_component	cytosol
B	0005840	cellular_component	ribosome
B	0006364	biological_process	rRNA processing
B	0006412	biological_process	translation
B	0006414	biological_process	translational elongation
B	0022625	cellular_component	cytosolic large ribosomal subunit
B	1990145	biological_process	maintenance of translational fidelity
B	1990904	cellular_component	ribonucleoprotein complex
C	0002181	biological_process	cytoplasmic translation
C	0003723	molecular_function	RNA binding
C	0003735	molecular_function	structural constituent of ribosome
C	0005634	cellular_component	nucleus
C	0005737	cellular_component	cytoplasm
C	0005829	cellular_component	cytosol
C	0005840	cellular_component	ribosome
C	0006412	biological_process	translation
C	0022625	cellular_component	cytosolic large ribosomal subunit
C	1990904	cellular_component	ribonucleoprotein complex
e	0002181	biological_process	cytoplasmic translation
e	0003735	molecular_function	structural constituent of ribosome
e	0005737	cellular_component	cytoplasm
e	0005829	cellular_component	cytosol
e	0005840	cellular_component	ribosome
e	0006412	biological_process	translation
e	0022625	cellular_component	cytosolic large ribosomal subunit
e	1990904	cellular_component	ribonucleoprotein complex
E	0000027	biological_process	ribosomal large subunit assembly
E	0002181	biological_process	cytoplasmic translation
E	0003723	molecular_function	RNA binding
E	0003735	molecular_function	structural constituent of ribosome
E	0005737	cellular_component	cytoplasm
E	0005829	cellular_component	cytosol
E	0005840	cellular_component	ribosome
E	0006412	biological_process	translation
E	0022625	cellular_component	cytosolic large ribosomal subunit
E	1990904	cellular_component	ribonucleoprotein complex
f	0000027	biological_process	ribosomal large subunit assembly
f	0002181	biological_process	cytoplasmic translation
f	0003735	molecular_function	structural constituent of ribosome
f	0005737	cellular_component	cytoplasm
f	0005829	cellular_component	cytosol
f	0005840	cellular_component	ribosome
f	0006364	biological_process	rRNA processing
f	0006412	biological_process	translation
f	0022625	cellular_component	cytosolic large ribosomal subunit
f	0042273	biological_process	ribosomal large subunit biogenesis
f	1990904	cellular_component	ribonucleoprotein complex
F	0000463	biological_process	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
F	0000470	biological_process	maturation of LSU-rRNA
F	0002181	biological_process	cytoplasmic translation
F	0003723	molecular_function	RNA binding
F	0003735	molecular_function	structural constituent of ribosome
F	0005737	cellular_component	cytoplasm
F	0005829	cellular_component	cytosol
F	0005840	cellular_component	ribosome
F	0022625	cellular_component	cytosolic large ribosomal subunit
F	0042273	biological_process	ribosomal large subunit biogenesis
F	1990904	cellular_component	ribonucleoprotein complex
G	0000470	biological_process	maturation of LSU-rRNA
G	0002181	biological_process	cytoplasmic translation
G	0003723	molecular_function	RNA binding
G	0003735	molecular_function	structural constituent of ribosome
G	0005737	cellular_component	cytoplasm
G	0005829	cellular_component	cytosol
G	0005840	cellular_component	ribosome
G	0022625	cellular_component	cytosolic large ribosomal subunit
G	0042254	biological_process	ribosome biogenesis
G	1990904	cellular_component	ribonucleoprotein complex
h	0000463	biological_process	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
h	0002181	biological_process	cytoplasmic translation
h	0003729	molecular_function	mRNA binding
h	0003735	molecular_function	structural constituent of ribosome
h	0005737	cellular_component	cytoplasm
h	0005829	cellular_component	cytosol
h	0005840	cellular_component	ribosome
h	0006412	biological_process	translation
h	0022625	cellular_component	cytosolic large ribosomal subunit
h	0030687	cellular_component	preribosome, large subunit precursor
h	1990904	cellular_component	ribonucleoprotein complex
H	0002181	biological_process	cytoplasmic translation
H	0003735	molecular_function	structural constituent of ribosome
H	0005737	cellular_component	cytoplasm
H	0005829	cellular_component	cytosol
H	0005840	cellular_component	ribosome
H	0006412	biological_process	translation
H	0019843	molecular_function	rRNA binding
H	0022625	cellular_component	cytosolic large ribosomal subunit
H	1990904	cellular_component	ribonucleoprotein complex
j	0000448	biological_process	cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
j	0002181	biological_process	cytoplasmic translation
j	0003723	molecular_function	RNA binding
j	0003735	molecular_function	structural constituent of ribosome
j	0005737	cellular_component	cytoplasm
j	0005829	cellular_component	cytosol
j	0005840	cellular_component	ribosome
j	0006412	biological_process	translation
j	0008270	molecular_function	zinc ion binding
j	0019843	molecular_function	rRNA binding
j	0022625	cellular_component	cytosolic large ribosomal subunit
j	0030687	cellular_component	preribosome, large subunit precursor
j	0044391	cellular_component	ribosomal subunit
j	0046872	molecular_function	metal ion binding
j	1990904	cellular_component	ribonucleoprotein complex
L	0002181	biological_process	cytoplasmic translation
L	0003723	molecular_function	RNA binding
L	0003735	molecular_function	structural constituent of ribosome
L	0005737	cellular_component	cytoplasm
L	0005829	cellular_component	cytosol
L	0005840	cellular_component	ribosome
L	0006412	biological_process	translation
L	0022625	cellular_component	cytosolic large ribosomal subunit
L	1990904	cellular_component	ribonucleoprotein complex
M	0000027	biological_process	ribosomal large subunit assembly
M	0000470	biological_process	maturation of LSU-rRNA
M	0002181	biological_process	cytoplasmic translation
M	0003723	molecular_function	RNA binding
M	0003735	molecular_function	structural constituent of ribosome
M	0005730	cellular_component	nucleolus
M	0005737	cellular_component	cytoplasm
M	0005829	cellular_component	cytosol
M	0005840	cellular_component	ribosome
M	0006412	biological_process	translation
M	0016236	biological_process	macroautophagy
M	0022625	cellular_component	cytosolic large ribosomal subunit
M	0032991	cellular_component	protein-containing complex
M	0042273	biological_process	ribosomal large subunit biogenesis
M	0043229	cellular_component	intracellular organelle
M	1990904	cellular_component	ribonucleoprotein complex
N	0002181	biological_process	cytoplasmic translation
N	0003723	molecular_function	RNA binding
N	0003735	molecular_function	structural constituent of ribosome
N	0005737	cellular_component	cytoplasm
N	0005829	cellular_component	cytosol
N	0005840	cellular_component	ribosome
N	0006412	biological_process	translation
N	0022625	cellular_component	cytosolic large ribosomal subunit
N	0022626	cellular_component	cytosolic ribosome
N	1990904	cellular_component	ribonucleoprotein complex
O	0000470	biological_process	maturation of LSU-rRNA
O	0002181	biological_process	cytoplasmic translation
O	0003723	molecular_function	RNA binding
O	0003729	molecular_function	mRNA binding
O	0003735	molecular_function	structural constituent of ribosome
O	0005730	cellular_component	nucleolus
O	0005737	cellular_component	cytoplasm
O	0005829	cellular_component	cytosol
O	0005840	cellular_component	ribosome
O	0006412	biological_process	translation
O	0015934	cellular_component	large ribosomal subunit
O	0017148	biological_process	negative regulation of translation
O	0022625	cellular_component	cytosolic large ribosomal subunit
O	1990904	cellular_component	ribonucleoprotein complex
P	0000448	biological_process	cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
P	0002181	biological_process	cytoplasmic translation
P	0003735	molecular_function	structural constituent of ribosome
P	0005737	cellular_component	cytoplasm
P	0005829	cellular_component	cytosol
P	0005840	cellular_component	ribosome
P	0006412	biological_process	translation
P	0015934	cellular_component	large ribosomal subunit
P	0022625	cellular_component	cytosolic large ribosomal subunit
P	0030687	cellular_component	preribosome, large subunit precursor
P	1990904	cellular_component	ribonucleoprotein complex
Q	0002181	biological_process	cytoplasmic translation
Q	0003723	molecular_function	RNA binding
Q	0003735	molecular_function	structural constituent of ribosome
Q	0005737	cellular_component	cytoplasm
Q	0005829	cellular_component	cytosol
Q	0005840	cellular_component	ribosome
Q	0006412	biological_process	translation
Q	0022625	cellular_component	cytosolic large ribosomal subunit
Q	0043232	cellular_component	intracellular non-membrane-bounded organelle
Q	1990904	cellular_component	ribonucleoprotein complex
r	0000460	biological_process	maturation of 5.8S rRNA
r	0000463	biological_process	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
r	0000466	biological_process	maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
r	0000470	biological_process	maturation of LSU-rRNA
r	0003674	molecular_function	molecular_function
r	0005515	molecular_function	protein binding
r	0005634	cellular_component	nucleus
r	0005730	cellular_component	nucleolus
r	0006364	biological_process	rRNA processing
r	0030687	cellular_component	preribosome, large subunit precursor
r	0042254	biological_process	ribosome biogenesis
r	0042273	biological_process	ribosomal large subunit biogenesis
S	0002181	biological_process	cytoplasmic translation
S	0003735	molecular_function	structural constituent of ribosome
S	0005737	cellular_component	cytoplasm
S	0005829	cellular_component	cytosol
S	0005840	cellular_component	ribosome
S	0006412	biological_process	translation
S	0022625	cellular_component	cytosolic large ribosomal subunit
S	1990904	cellular_component	ribonucleoprotein complex
u	0001671	molecular_function	ATPase activator activity
u	0005634	cellular_component	nucleus
u	0005730	cellular_component	nucleolus
u	0005737	cellular_component	cytoplasm
u	0030687	cellular_component	preribosome, large subunit precursor
u	0032781	biological_process	positive regulation of ATP-dependent activity
u	0042254	biological_process	ribosome biogenesis
u	0042273	biological_process	ribosomal large subunit biogenesis
u	0051117	molecular_function	ATPase binding
u	1902626	biological_process	assembly of large subunit precursor of preribosome
V	0002181	biological_process	cytoplasmic translation
V	0003735	molecular_function	structural constituent of ribosome
V	0005737	cellular_component	cytoplasm
V	0005829	cellular_component	cytosol
V	0005840	cellular_component	ribosome
V	0006412	biological_process	translation
V	0022625	cellular_component	cytosolic large ribosomal subunit
V	0070180	molecular_function	large ribosomal subunit rRNA binding
V	1990904	cellular_component	ribonucleoprotein complex
W	0000027	biological_process	ribosomal large subunit assembly
W	0000055	biological_process	ribosomal large subunit export from nucleus
W	0000956	biological_process	nuclear-transcribed mRNA catabolic process
W	0005634	cellular_component	nucleus
W	0005654	cellular_component	nucleoplasm
W	0005730	cellular_component	nucleolus
W	0005737	cellular_component	cytoplasm
W	0006364	biological_process	rRNA processing
W	0030490	biological_process	maturation of SSU-rRNA
W	0030687	cellular_component	preribosome, large subunit precursor
W	0032040	cellular_component	small-subunit processome
W	0042254	biological_process	ribosome biogenesis
W	0042273	biological_process	ribosomal large subunit biogenesis
W	0070180	molecular_function	large ribosomal subunit rRNA binding
y	0000054	biological_process	ribosomal subunit export from nucleus
y	0000460	biological_process	maturation of 5.8S rRNA
y	0000463	biological_process	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
y	0000466	biological_process	maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
y	0000470	biological_process	maturation of LSU-rRNA
y	0003743	molecular_function	translation initiation factor activity
y	0005515	molecular_function	protein binding
y	0005634	cellular_component	nucleus
y	0005730	cellular_component	nucleolus
y	0005737	cellular_component	cytoplasm
y	0005829	cellular_component	cytosol
y	0006364	biological_process	rRNA processing
y	0006412	biological_process	translation
y	0006413	biological_process	translational initiation
y	0030687	cellular_component	preribosome, large subunit precursor
y	0042254	biological_process	ribosome biogenesis
y	0042256	biological_process	cytosolic ribosome assembly
y	0042273	biological_process	ribosomal large subunit biogenesis
y	0043022	molecular_function	ribosome binding
y	0043023	molecular_function	ribosomal large subunit binding
y	1902626	biological_process	assembly of large subunit precursor of preribosome
Y	0002181	biological_process	cytoplasmic translation
Y	0003723	molecular_function	RNA binding
Y	0003735	molecular_function	structural constituent of ribosome
Y	0005737	cellular_component	cytoplasm
Y	0005829	cellular_component	cytosol
Y	0005840	cellular_component	ribosome
Y	0006412	biological_process	translation
Y	0015934	cellular_component	large ribosomal subunit
Y	0022625	cellular_component	cytosolic large ribosomal subunit
Y	0032991	cellular_component	protein-containing complex
Y	0042273	biological_process	ribosomal large subunit biogenesis
Y	0043229	cellular_component	intracellular organelle
Y	1990904	cellular_component	ribonucleoprotein complex

Functional Information from PROSITE/UniProt

site_id	PS00049
Number of Residues	27
Details	RIBOSOMAL_L14 Ribosomal protein L14 signature. AIVVrqakswrrr.DGvflyFedNagVI

Chain	Residue	Details
V	ALA76-ILE102

site_id	PS00464
Number of Residues	25
Details	RIBOSOMAL_L22 Ribosomal protein L22 signature. RrrTyRAhGRinkyesspSHIELvV

Chain	Residue	Details
P	ARG126-VAL150

site_id	PS00474
Number of Residues	24
Details	RIBOSOMAL_L3 Ribosomal protein L3 signature. FeqnemiDaiAvTkGHGfeGvthR

Chain	Residue	Details
B	PHE209-ARG232

site_id	PS00579
Number of Residues	15
Details	RIBOSOMAL_L29 Ribosomal protein L29 signature. SLPKIKtVRKSIACV

Chain	Residue	Details
h	SER40-VAL54

site_id	PS00580
Number of Residues	21
Details	RIBOSOMAL_L32E Ribosomal protein L32e signature. FkRhhsdRyhRVaen..WRKqkG

Chain	Residue	Details
e	PHE17-GLY37

site_id	PS00634
Number of Residues	33
Details	RIBOSOMAL_L30 Ribosomal protein L30 signature. VLqlLrLtRinSgTfvkvtkatleLLklIepYV

Chain	Residue	Details
F	VAL102-VAL134

site_id	PS00700
Number of Residues	22
Details	RIBOSOMAL_L6_2 Ribosomal protein L6 signature 2. QicrVrnKdiRkFlDGIYVshK

Chain	Residue	Details
H	GLN163-LYS184

site_id	PS00783
Number of Residues	24
Details	RIBOSOMAL_L13 Ribosomal protein L13 signature. LRGMVShktarGKaalerLkVFeG

Chain	Residue	Details
O	LEU84-GLY107

site_id	PS00939
Number of Residues	27
Details	RIBOSOMAL_L1E Ribosomal protein L1e signature. NhneKryATaSAIaATAvaslvlaRGH

Chain	Residue	Details
C	ASN114-HIS140

site_id	PS01077
Number of Residues	20
Details	RIBOSOMAL_L37E Ribosomal protein L37e signature. GTpSfGkRhnks.HtlCnRCG

Chain	Residue	Details
j	GLY4-GLY23

site_id	PS01082
Number of Residues	18
Details	RIBOSOMAL_L7AE Ribosomal protein L7Ae signature. CkkmgVPYaiVkGKarLG

Chain	Residue	Details
G	CYS170-GLY187

site_id	PS01104
Number of Residues	15
Details	RIBOSOMAL_L13E Ribosomal protein L13e signature. RaGRGFTLaEVkaaG

Chain	Residue	Details
L	ARG70-GLY84

site_id	PS01105
Number of Residues	22
Details	RIBOSOMAL_L35AE Ribosomal protein L35Ae signature. GKVtRtHGnsGvVrAtFrnnLP

Chain	Residue	Details
f	GLY69-PRO90

site_id	PS01106
Number of Residues	18
Details	RIBOSOMAL_L18E Ribosomal protein L18e signature. KaLflSKinRPpVSVsRI

Chain	Residue	Details
Q	LYS50-ILE67

site_id	PS01108
Number of Residues	18
Details	RIBOSOMAL_L24 Ribosomal protein L24 signature. DDeVlVVrGskKGqe.GkI

Chain	Residue	Details
Y	ASP53-ILE70

site_id	PS01170
Number of Residues	19
Details	RIBOSOMAL_L6E Ribosomal protein L6e signature. NgvPLRRvnarYVIATSt.K

Chain	Residue	Details
E	ASN72-LYS90

site_id	PS01194
Number of Residues	24
Details	RIBOSOMAL_L15E Ribosomal protein L15e signature. DKARrLGYkAkqGFVIYRvRVrRG

Chain	Residue	Details
N	ASP46-GLY69

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	2
Details	MOD_RES: Phosphothreonine => ECO:0000250\|UniProtKB:P40212

Chain	Residue	Details
L	THR144
L	THR152
b	ASN288

site_id	SWS_FT_FI2
Number of Residues	1
Details	MOD_RES: Omega-N-methylarginine => ECO:0000269\|PubMed:26046779

Chain	Residue	Details
C	ARG95
j	CYS22
j	CYS34
j	CYS37

site_id	SWS_FT_FI3
Number of Residues	1
Details	MOD_RES: Pros-methylhistidine => ECO:0000269\|PubMed:20864530, ECO:0000269\|PubMed:24865971, ECO:0000269\|PubMed:26826131

Chain	Residue	Details
B	HIS243

site_id	SWS_FT_FI4
Number of Residues	1
Details	MOD_RES: Phosphoserine => ECO:0007744\|PubMed:19779198

Chain	Residue	Details
B	SER297

site_id	SWS_FT_FI5
Number of Residues	3
Details	CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0007744\|PubMed:22106047

Chain	Residue	Details
B	LYS39
B	LYS136

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		Validation report (PDF)