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7NRZ

Crystal structure of malate dehydrogenase from Trypanosoma cruzi

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0005737cellular_componentcytoplasm
A0006099biological_processtricarboxylic acid cycle
A0016491molecular_functionoxidoreductase activity
A0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
A0019752biological_processcarboxylic acid metabolic process
A0030060molecular_functionL-malate dehydrogenase (NAD+) activity
B0003824molecular_functioncatalytic activity
B0005737cellular_componentcytoplasm
B0006099biological_processtricarboxylic acid cycle
B0016491molecular_functionoxidoreductase activity
B0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
B0019752biological_processcarboxylic acid metabolic process
B0030060molecular_functionL-malate dehydrogenase (NAD+) activity
C0003824molecular_functioncatalytic activity
C0005737cellular_componentcytoplasm
C0006099biological_processtricarboxylic acid cycle
C0016491molecular_functionoxidoreductase activity
C0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
C0019752biological_processcarboxylic acid metabolic process
C0030060molecular_functionL-malate dehydrogenase (NAD+) activity
D0003824molecular_functioncatalytic activity
D0005737cellular_componentcytoplasm
D0006099biological_processtricarboxylic acid cycle
D0016491molecular_functionoxidoreductase activity
D0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
D0019752biological_processcarboxylic acid metabolic process
D0030060molecular_functionL-malate dehydrogenase (NAD+) activity
E0003824molecular_functioncatalytic activity
E0005737cellular_componentcytoplasm
E0006099biological_processtricarboxylic acid cycle
E0016491molecular_functionoxidoreductase activity
E0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
E0019752biological_processcarboxylic acid metabolic process
E0030060molecular_functionL-malate dehydrogenase (NAD+) activity
F0003824molecular_functioncatalytic activity
F0005737cellular_componentcytoplasm
F0006099biological_processtricarboxylic acid cycle
F0016491molecular_functionoxidoreductase activity
F0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
F0019752biological_processcarboxylic acid metabolic process
F0030060molecular_functionL-malate dehydrogenase (NAD+) activity
G0003824molecular_functioncatalytic activity
G0005737cellular_componentcytoplasm
G0006099biological_processtricarboxylic acid cycle
G0016491molecular_functionoxidoreductase activity
G0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
G0019752biological_processcarboxylic acid metabolic process
G0030060molecular_functionL-malate dehydrogenase (NAD+) activity
H0003824molecular_functioncatalytic activity
H0005737cellular_componentcytoplasm
H0006099biological_processtricarboxylic acid cycle
H0016491molecular_functionoxidoreductase activity
H0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
H0019752biological_processcarboxylic acid metabolic process
H0030060molecular_functionL-malate dehydrogenase (NAD+) activity
Functional Information from PDB Data
site_idAC1
Number of Residues7
Detailsbinding site for residue EDO A 401
ChainResidue
AVAL126
AVAL155
ASER156
ALEU157
ALEU158
AHIS185
AMET235

site_idAC2
Number of Residues6
Detailsbinding site for residue EDO A 402
ChainResidue
ATHR164
ATYR178
AVAL179
BHOH1915
ALEU157
AGLY160

site_idAC3
Number of Residues4
Detailsbinding site for residue EDO A 403
ChainResidue
AVAL37
AGLY38
AALA60
AHOH513

site_idAC4
Number of Residues2
Detailsbinding site for residue EDO A 404
ChainResidue
AARG286
AARG287

site_idAC5
Number of Residues1
Detailsbinding site for residue EDO A 405
ChainResidue
AASP35

site_idAC6
Number of Residues9
Detailsbinding site for residue PEG A 406
ChainResidue
AALA52
AGLY53
AILE54
ATHR55
AEDO409
BARG165
BASN169
BHIS172
BVAL175

site_idAC7
Number of Residues5
Detailsbinding site for residue PGE A 407
ChainResidue
AARG23
AASP50
AARG51
AALA52
AHOH541

site_idAC8
Number of Residues5
Detailsbinding site for residue EDO A 408
ChainResidue
ALEU288
APRO289
APGE418
CPRO198
CGLY199

site_idAC9
Number of Residues4
Detailsbinding site for residue EDO A 409
ChainResidue
ATHR55
AVAL56
APEG406
BEDO1805

site_idAD1
Number of Residues1
Detailsbinding site for residue EDO A 410
ChainResidue
ASER116

site_idAD2
Number of Residues5
Detailsbinding site for residue EDO A 411
ChainResidue
AARG165
AASN169
AARG213
BSER47
BEDO1801

site_idAD3
Number of Residues5
Detailsbinding site for residue EDO A 412
ChainResidue
AGLU24
AMET244
AHIS245
ALYS248
AHOH506

site_idAD4
Number of Residues4
Detailsbinding site for residue EDO A 413
ChainResidue
AMET1
AASN3
AGLY78
AASP80

site_idAD5
Number of Residues2
Detailsbinding site for residue EDO A 414
ChainResidue
ALYS57
AHIS58

site_idAD6
Number of Residues2
Detailsbinding site for residue EDO A 415
ChainResidue
ATYR178
AMET257

site_idAD7
Number of Residues1
Detailsbinding site for residue EDO A 416
ChainResidue
AASP109

site_idAD8
Number of Residues3
Detailsbinding site for residue EDO A 417
ChainResidue
APRO198
AGLY199
CPRO289

site_idAD9
Number of Residues9
Detailsbinding site for residue PGE A 418
ChainResidue
ATYR178
ASER195
AGLN196
ATYR259
APRO292
AEDO408
CGLN196
CILE197
CPRO198

site_idAE1
Number of Residues8
Detailsbinding site for residue PEG A 419
ChainResidue
ATYR178
APRO256
AMET257
AHOH508
CVAL175
CPRO177
CPRO198
DPG4404

site_idAE2
Number of Residues2
Detailsbinding site for residue EDO B 1801
ChainResidue
AEDO411
BVAL56

site_idAE3
Number of Residues7
Detailsbinding site for residue EDO B 1802
ChainResidue
BVAL155
BSER156
BLEU157
BLEU158
BHIS185
BMET235
BHOH1901

site_idAE4
Number of Residues5
Detailsbinding site for residue EDO B 1803
ChainResidue
AARG165
AASN169
AHIS172
BGLY53
BILE54

site_idAE5
Number of Residues6
Detailsbinding site for residue EDO B 1804
ChainResidue
BILE290
BHOH1922
DPRO198
DGLY199
BLEU288
BPRO289

site_idAE6
Number of Residues5
Detailsbinding site for residue EDO B 1805
ChainResidue
ASER47
AEDO409
BARG165
BASN169
BARG213

site_idAE7
Number of Residues5
Detailsbinding site for residue PEG B 1806
ChainResidue
BASN150
BGLU285
BARG286
BARG287
BHOH1910

site_idAE8
Number of Residues7
Detailsbinding site for residue EDO B 1807
ChainResidue
BPRO119
BALA121
BLEU141
BVAL146
BTYR147
BASN148
BLYS151

site_idAE9
Number of Residues5
Detailsbinding site for residue EDO B 1808
ChainResidue
BGLY160
BTHR164
BTYR178
BVAL179
BVAL181

site_idAF1
Number of Residues3
Detailsbinding site for residue EDO B 1809
ChainResidue
AGLN15
BLYS225
BHOH1916

site_idAF2
Number of Residues7
Detailsbinding site for residue EDO B 1810
ChainResidue
BVAL85
BGLY87
BVAL88
BVAL126
BASN128
BMET235
BHOH1901

site_idAF3
Number of Residues3
Detailsbinding site for residue EDO B 1811
ChainResidue
BASP50
BARG51
BHOH1905

site_idAF4
Number of Residues3
Detailsbinding site for residue EDO B 1812
ChainResidue
BGLY11
BASP35
BVAL37

site_idAF5
Number of Residues4
Detailsbinding site for residue EDO B 1813
ChainResidue
BMET1
BASN3
BGLY78
BASP80

site_idAF6
Number of Residues3
Detailsbinding site for residue PEG C 401
ChainResidue
CTYR178
CMET257
CEDO408

site_idAF7
Number of Residues7
Detailsbinding site for residue EDO C 402
ChainResidue
CVAL155
CSER156
CLEU157
CLEU158
CHIS185
CMET235
CALA238

site_idAF8
Number of Residues6
Detailsbinding site for residue EDO C 403
ChainResidue
CALA52
CGLY53
CILE54
DARG165
DASN169
DHIS172

site_idAF9
Number of Residues4
Detailsbinding site for residue EDO C 404
ChainResidue
CTYR147
CLYS149
GLYS143
GGLY145

site_idAG1
Number of Residues1
Detailsbinding site for residue EDO C 405
ChainResidue
CASP109

site_idAG2
Number of Residues5
Detailsbinding site for residue EDO C 406
ChainResidue
CGLY160
CTHR164
CTYR178
CVAL179
CVAL181

site_idAG3
Number of Residues4
Detailsbinding site for residue EDO C 407
ChainResidue
CGLU237
CARG241
CHOH539
DARG23

site_idAG4
Number of Residues3
Detailsbinding site for residue EDO C 408
ChainResidue
CPRO177
CARG241
CPEG401

site_idAG5
Number of Residues5
Detailsbinding site for residue EDO C 409
ChainResidue
CPHE27
CARG51
CALA52
CEDO410
DEDO410

site_idAG6
Number of Residues6
Detailsbinding site for residue EDO C 410
ChainResidue
CILE49
CASP50
CARG51
CEDO409
DGLU237
DARG241

site_idAG7
Number of Residues8
Detailsbinding site for residue EDO D 401
ChainResidue
CARG165
CASN168
CASN169
CHIS172
CVAL175
DALA52
DGLY53
DILE54

site_idAG8
Number of Residues6
Detailsbinding site for residue EDO D 402
ChainResidue
CHOH515
DGLY160
DTHR164
DTYR178
DVAL179
DHOH529

site_idAG9
Number of Residues3
Detailsbinding site for residue EDO D 403
ChainResidue
DGLY11
DASP35
DVAL37

site_idAH1
Number of Residues9
Detailsbinding site for residue PG4 D 404
ChainResidue
APEG419
CVAL175
CVAL176
CGLU237
CARG241
DARG23
DASP50
DARG51
DALA52

site_idAH2
Number of Residues1
Detailsbinding site for residue EDO D 405
ChainResidue
DARG241

site_idAH3
Number of Residues4
Detailsbinding site for residue EDO D 406
ChainResidue
BPRO198
BGLY199
DLEU288
DPRO289

site_idAH4
Number of Residues3
Detailsbinding site for residue EDO D 407
ChainResidue
CSER47
DASN169
DARG213

site_idAH5
Number of Residues7
Detailsbinding site for residue EDO D 408
ChainResidue
DVAL126
DVAL155
DLEU157
DLEU158
DHIS185
DMET235
DHOH503

site_idAH6
Number of Residues2
Detailsbinding site for residue EDO D 409
ChainResidue
DARG142
HARG142

site_idAH7
Number of Residues3
Detailsbinding site for residue EDO D 410
ChainResidue
CEDO409
DPRO177
DHOH504

site_idAH8
Number of Residues3
Detailsbinding site for residue EDO D 411
ChainResidue
DASP254
DPRO256
DMET257

site_idAH9
Number of Residues2
Detailsbinding site for residue EDO D 412
ChainResidue
DPRO67
DARG68

site_idAI1
Number of Residues8
Detailsbinding site for residue EDO E 401
ChainResidue
AARG142
AGLY145
AVAL146
ATYR147
EARG142
EGLY145
EVAL146
ETYR147

site_idAI2
Number of Residues5
Detailsbinding site for residue EDO E 402
ChainResidue
EGLY160
ETHR164
ETYR178
EVAL179
ETYR259

site_idAI3
Number of Residues8
Detailsbinding site for residue PG4 E 403
ChainResidue
EASP50
EARG51
EALA52
FARG241
FEDO801
HLYS248
HLEU253
HASP254

site_idAI4
Number of Residues7
Detailsbinding site for residue EDO E 404
ChainResidue
EASN128
EVAL155
ESER156
ELEU157
ELEU158
EHIS185
EMET235

site_idAI5
Number of Residues6
Detailsbinding site for residue EDO E 405
ChainResidue
EPRO198
EGLY199
GTYR259
GPRO276
GLEU288
GPRO289

site_idAI6
Number of Residues5
Detailsbinding site for residue EDO F 801
ChainResidue
EASP50
EALA52
EPG4403
FVAL175
FPRO177

site_idAI7
Number of Residues6
Detailsbinding site for residue EDO F 802
ChainResidue
EARG165
EASN169
EHIS172
FALA52
FGLY53
FILE54

site_idAI8
Number of Residues5
Detailsbinding site for residue EDO F 803
ChainResidue
EVAL175
EVAL176
FASP50
FALA52
FPEG807

site_idAI9
Number of Residues2
Detailsbinding site for residue EDO F 804
ChainResidue
FTHR295
FVAL296

site_idAJ1
Number of Residues7
Detailsbinding site for residue EDO F 805
ChainResidue
FASN128
FVAL155
FSER156
FLEU157
FLEU158
FHIS185
FMET235

site_idAJ2
Number of Residues3
Detailsbinding site for residue EDO F 806
ChainResidue
FALA43
FVAL56
FHIS58

site_idAJ3
Number of Residues4
Detailsbinding site for residue PEG F 807
ChainResidue
FASP50
FARG51
FALA52
FEDO803

site_idAJ4
Number of Residues4
Detailsbinding site for residue EDO F 808
ChainResidue
FARG241
FMET244
FHIS245
FLYS248

site_idAJ5
Number of Residues7
Detailsbinding site for residue EDO F 809
ChainResidue
FTYR259
FLEU288
FPRO289
FILE290
FEDO814
HPRO198
HGLY199

site_idAJ6
Number of Residues5
Detailsbinding site for residue EDO F 810
ChainResidue
FVAL37
FGLY38
FPRO40
FHOH912
FHOH916

site_idAJ7
Number of Residues4
Detailsbinding site for residue EDO F 811
ChainResidue
FILE13
FGLY87
FVAL126
FASN128

site_idAJ8
Number of Residues4
Detailsbinding site for residue EDO F 812
ChainResidue
BLYS143
FARG142
FLYS149
FEDO813

site_idAJ9
Number of Residues6
Detailsbinding site for residue EDO F 813
ChainResidue
BLYS143
BGLY145
FARG142
FTYR147
FLYS149
FEDO812

site_idAK1
Number of Residues5
Detailsbinding site for residue EDO F 814
ChainResidue
FGLN196
FEDO809
HGLN196
HPRO198
HEDO1101

site_idAK2
Number of Residues4
Detailsbinding site for residue EDO F 815
ChainResidue
FPRO198
FGLY199
HPRO289
HEDO1101

site_idAK3
Number of Residues3
Detailsbinding site for residue EDO G 1001
ChainResidue
EPRO289
GPRO198
GGLY199

site_idAK4
Number of Residues5
Detailsbinding site for residue EDO G 1002
ChainResidue
GGLY160
GTHR164
GTYR178
GVAL179
GHOH1107

site_idAK5
Number of Residues7
Detailsbinding site for residue EDO G 1003
ChainResidue
GASN128
GVAL155
GSER156
GLEU157
GLEU158
GHIS185
GMET235

site_idAK6
Number of Residues3
Detailsbinding site for residue EDO G 1004
ChainResidue
GGLY280
GLYS281
GGLU285

site_idAK7
Number of Residues4
Detailsbinding site for residue EDO G 1005
ChainResidue
CASN120
GTYR147
GASN148
GEDO1006

site_idAK8
Number of Residues5
Detailsbinding site for residue EDO G 1006
ChainResidue
CSER116
CILE144
GLYS149
GEDO1005
GHOH1104

site_idAK9
Number of Residues2
Detailsbinding site for residue EDO G 1007
ChainResidue
GARG287
GHOH1116

site_idAL1
Number of Residues2
Detailsbinding site for residue EDO G 1008
ChainResidue
GHIS245
GMET257

site_idAL2
Number of Residues3
Detailsbinding site for residue EDO G 1009
ChainResidue
EVAL175
GASP254
GMET257

site_idAL3
Number of Residues7
Detailsbinding site for residue EDO G 1010
ChainResidue
GALA52
GGLY53
GILE54
HARG165
HASN168
HASN169
HHIS172

site_idAL4
Number of Residues4
Detailsbinding site for residue CL G 1011
ChainResidue
GILE167
GASN168
GARG171
GLEU174

site_idAL5
Number of Residues5
Detailsbinding site for residue EDO H 1101
ChainResidue
FGLN196
FEDO814
FEDO815
HGLN196
HHOH1206

site_idAL6
Number of Residues4
Detailsbinding site for residue EDO H 1102
ChainResidue
HGLY160
HTYR178
HVAL179
HVAL181

site_idAL7
Number of Residues4
Detailsbinding site for residue EDO H 1103
ChainResidue
GARG23
HGLU24
HGLU237
HARG241

site_idAL8
Number of Residues3
Detailsbinding site for residue EDO H 1104
ChainResidue
HTYR178
HMET257
HHOH1215

222624

PDB entries from 2024-07-17

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