| Chain | GOid | namespace | contents |
| A | 0000118 | cellular_component | histone deacetylase complex |
| A | 0000122 | biological_process | negative regulation of transcription by RNA polymerase II |
| A | 0000781 | cellular_component | chromosome, telomeric region |
| A | 0000785 | cellular_component | chromatin |
| A | 0000978 | molecular_function | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
| A | 0005515 | molecular_function | protein binding |
| A | 0005634 | cellular_component | nucleus |
| A | 0005654 | cellular_component | nucleoplasm |
| A | 0005694 | cellular_component | chromosome |
| A | 0005829 | cellular_component | cytosol |
| A | 0006260 | biological_process | DNA replication |
| A | 0006325 | biological_process | chromatin organization |
| A | 0006334 | biological_process | nucleosome assembly |
| A | 0006335 | biological_process | DNA replication-dependent chromatin assembly |
| A | 0006338 | biological_process | chromatin remodeling |
| A | 0006355 | biological_process | regulation of DNA-templated transcription |
| A | 0007420 | biological_process | brain development |
| A | 0008094 | molecular_function | ATP-dependent activity, acting on DNA |
| A | 0008285 | biological_process | negative regulation of cell population proliferation |
| A | 0016581 | cellular_component | NuRD complex |
| A | 0016589 | cellular_component | NURF complex |
| A | 0030336 | biological_process | negative regulation of cell migration |
| A | 0030512 | biological_process | negative regulation of transforming growth factor beta receptor signaling pathway |
| A | 0031492 | molecular_function | nucleosomal DNA binding |
| A | 0032991 | cellular_component | protein-containing complex |
| A | 0033186 | cellular_component | CAF-1 complex |
| A | 0035098 | cellular_component | ESC/E(Z) complex |
| A | 0042393 | molecular_function | histone binding |
| A | 0042659 | biological_process | regulation of cell fate specification |
| A | 0042826 | molecular_function | histone deacetylase binding |
| A | 0045892 | biological_process | negative regulation of DNA-templated transcription |
| A | 0045893 | biological_process | positive regulation of DNA-templated transcription |
| A | 0070822 | cellular_component | Sin3-type complex |
| A | 1902455 | biological_process | negative regulation of stem cell population maintenance |
| A | 1902459 | biological_process | positive regulation of stem cell population maintenance |
| A | 1904949 | cellular_component | ATPase complex |
| A | 2000736 | biological_process | regulation of stem cell differentiation |
| B | 0006351 | biological_process | DNA-templated transcription |
| B | 0017053 | cellular_component | transcription repressor complex |
| C | 0017053 | cellular_component | transcription repressor complex |
