7MMR
Crystal Structure of the Class Ie Ribonucleotide Reductase Beta-NrdI complex from Aerococcus urinae in Oxidized Form with Cu(I) bound
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0005971 | cellular_component | ribonucleoside-diphosphate reductase complex |
| A | 0009263 | biological_process | deoxyribonucleotide biosynthetic process |
| A | 0016491 | molecular_function | oxidoreductase activity |
| B | 0005971 | cellular_component | ribonucleoside-diphosphate reductase complex |
| B | 0009263 | biological_process | deoxyribonucleotide biosynthetic process |
| B | 0016491 | molecular_function | oxidoreductase activity |
| C | 0005971 | cellular_component | ribonucleoside-diphosphate reductase complex |
| C | 0009263 | biological_process | deoxyribonucleotide biosynthetic process |
| C | 0016491 | molecular_function | oxidoreductase activity |
| D | 0005971 | cellular_component | ribonucleoside-diphosphate reductase complex |
| D | 0009263 | biological_process | deoxyribonucleotide biosynthetic process |
| D | 0016491 | molecular_function | oxidoreductase activity |
| E | 0010181 | molecular_function | FMN binding |
| E | 0036211 | biological_process | protein modification process |
| F | 0010181 | molecular_function | FMN binding |
| F | 0036211 | biological_process | protein modification process |
| G | 0010181 | molecular_function | FMN binding |
| G | 0036211 | biological_process | protein modification process |
| H | 0010181 | molecular_function | FMN binding |
| H | 0036211 | biological_process | protein modification process |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 5 |
| Details | binding site for residue CU1 A 401 |
| Chain | Residue |
| A | VAL116 |
| A | PRO176 |
| A | HIS213 |
| A | HOH553 |
| A | HOH597 |
| site_id | AC2 |
| Number of Residues | 3 |
| Details | binding site for residue CU1 A 402 |
| Chain | Residue |
| A | THR75 |
| A | CYS131 |
| A | GLN135 |
| site_id | AC3 |
| Number of Residues | 6 |
| Details | binding site for residue GOL A 403 |
| Chain | Residue |
| A | ASN42 |
| A | ARG43 |
| E | TYR50 |
| E | GLY52 |
| E | FMN201 |
| A | GLU39 |
| site_id | AC4 |
| Number of Residues | 5 |
| Details | binding site for residue CU1 B 401 |
| Chain | Residue |
| B | VAL116 |
| B | PRO176 |
| B | HIS213 |
| B | HOH550 |
| B | HOH586 |
| site_id | AC5 |
| Number of Residues | 3 |
| Details | binding site for residue CU1 B 402 |
| Chain | Residue |
| B | THR75 |
| B | CYS131 |
| B | GLN135 |
| site_id | AC6 |
| Number of Residues | 6 |
| Details | binding site for residue GOL B 403 |
| Chain | Residue |
| B | TYR6 |
| B | SER11 |
| B | ARG25 |
| B | SER100 |
| B | LEU101 |
| B | GLN106 |
| site_id | AC7 |
| Number of Residues | 6 |
| Details | binding site for residue GOL B 404 |
| Chain | Residue |
| B | TRP63 |
| B | ASN64 |
| B | GLN71 |
| B | LEU130 |
| B | CYS131 |
| B | GLN135 |
| site_id | AC8 |
| Number of Residues | 4 |
| Details | binding site for residue CU1 C 401 |
| Chain | Residue |
| C | VAL116 |
| C | HIS213 |
| C | HOH571 |
| C | HOH594 |
| site_id | AC9 |
| Number of Residues | 1 |
| Details | binding site for residue CU1 C 402 |
| Chain | Residue |
| C | HIS256 |
| site_id | AD1 |
| Number of Residues | 7 |
| Details | binding site for residue GOL C 403 |
| Chain | Residue |
| C | TYR6 |
| C | SER11 |
| C | ARG25 |
| C | SER100 |
| C | LEU101 |
| C | GLN106 |
| C | HOH504 |
| site_id | AD2 |
| Number of Residues | 6 |
| Details | binding site for residue TRS C 404 |
| Chain | Residue |
| C | TRP63 |
| C | ASN64 |
| C | GLN71 |
| C | LEU130 |
| C | THR132 |
| C | GLN135 |
| site_id | AD3 |
| Number of Residues | 4 |
| Details | binding site for residue CU1 C 405 |
| Chain | Residue |
| C | TRP63 |
| C | THR75 |
| C | CYS131 |
| C | GLN135 |
| site_id | AD4 |
| Number of Residues | 1 |
| Details | binding site for residue CA C 406 |
| Chain | Residue |
| C | GLU299 |
| site_id | AD5 |
| Number of Residues | 3 |
| Details | binding site for residue CA C 407 |
| Chain | Residue |
| C | GLY263 |
| C | ASP266 |
| C | GLU267 |
| site_id | AD6 |
| Number of Residues | 4 |
| Details | binding site for residue CA C 408 |
| Chain | Residue |
| C | GLU52 |
| C | ARG121 |
| D | TRP41 |
| D | HOH546 |
| site_id | AD7 |
| Number of Residues | 5 |
| Details | binding site for residue CU1 D 401 |
| Chain | Residue |
| D | VAL116 |
| D | PRO176 |
| D | HIS213 |
| D | HOH563 |
| D | HOH597 |
| site_id | AD8 |
| Number of Residues | 3 |
| Details | binding site for residue CU1 D 402 |
| Chain | Residue |
| D | THR75 |
| D | CYS131 |
| D | GLN135 |
| site_id | AD9 |
| Number of Residues | 6 |
| Details | binding site for residue GOL D 403 |
| Chain | Residue |
| D | TYR6 |
| D | SER11 |
| D | GLU14 |
| D | ARG25 |
| D | LEU101 |
| D | GLU103 |
| site_id | AE1 |
| Number of Residues | 5 |
| Details | binding site for residue GOL D 404 |
| Chain | Residue |
| D | TRP63 |
| D | ASN64 |
| D | GLN71 |
| D | LEU130 |
| D | GLN135 |
| site_id | AE2 |
| Number of Residues | 23 |
| Details | binding site for residue FMN E 201 |
| Chain | Residue |
| E | PHE95 |
| E | SER98 |
| E | PHE99 |
| E | ALA100 |
| E | LEU120 |
| E | CA202 |
| E | HOH307 |
| A | PHE215 |
| A | GOL403 |
| E | SER9 |
| E | THR10 |
| E | SER12 |
| E | ASN13 |
| E | ASN14 |
| E | THR15 |
| E | PRO48 |
| E | THR49 |
| E | TYR50 |
| E | SER51 |
| E | GLY52 |
| E | GLY53 |
| E | GLY91 |
| E | ASN92 |
| site_id | AE3 |
| Number of Residues | 4 |
| Details | binding site for residue CA E 202 |
| Chain | Residue |
| A | ASN282 |
| E | ASN92 |
| E | LEU120 |
| E | FMN201 |
| site_id | AE4 |
| Number of Residues | 22 |
| Details | binding site for residue FMN G 201 |
| Chain | Residue |
| C | PHE215 |
| G | SER9 |
| G | THR10 |
| G | SER12 |
| G | ASN13 |
| G | ASN14 |
| G | THR15 |
| G | PRO48 |
| G | THR49 |
| G | TYR50 |
| G | SER51 |
| G | GLY52 |
| G | GLY53 |
| G | GLY91 |
| G | ASN92 |
| G | PHE95 |
| G | SER98 |
| G | PHE99 |
| G | ALA100 |
| G | LEU120 |
| G | CA202 |
| G | HOH310 |
| site_id | AE5 |
| Number of Residues | 4 |
| Details | binding site for residue CA G 202 |
| Chain | Residue |
| C | ASN282 |
| G | ASN92 |
| G | LEU120 |
| G | FMN201 |
| site_id | AE6 |
| Number of Residues | 23 |
| Details | binding site for residue FMN F 201 |
| Chain | Residue |
| B | GLU39 |
| B | PHE215 |
| F | SER9 |
| F | THR10 |
| F | SER12 |
| F | ASN13 |
| F | ASN14 |
| F | THR15 |
| F | PRO48 |
| F | THR49 |
| F | TYR50 |
| F | SER51 |
| F | GLY52 |
| F | GLY53 |
| F | GLY91 |
| F | ASN92 |
| F | PHE95 |
| F | SER98 |
| F | PHE99 |
| F | ALA100 |
| F | LEU120 |
| F | CA202 |
| F | HOH311 |
| site_id | AE7 |
| Number of Residues | 4 |
| Details | binding site for residue CA F 202 |
| Chain | Residue |
| B | ASN282 |
| F | ASN92 |
| F | LEU120 |
| F | FMN201 |
| site_id | AE8 |
| Number of Residues | 23 |
| Details | binding site for residue FMN H 201 |
| Chain | Residue |
| D | GLU39 |
| D | PHE215 |
| H | SER9 |
| H | THR10 |
| H | SER12 |
| H | ASN13 |
| H | ASN14 |
| H | THR15 |
| H | PRO48 |
| H | THR49 |
| H | TYR50 |
| H | SER51 |
| H | GLY52 |
| H | GLY53 |
| H | GLY91 |
| H | ASN92 |
| H | PHE95 |
| H | SER98 |
| H | PHE99 |
| H | ALA100 |
| H | LEU120 |
| H | CA202 |
| H | HOH306 |
| site_id | AE9 |
| Number of Residues | 3 |
| Details | binding site for residue CA H 202 |
| Chain | Residue |
| H | ASN92 |
| H | LEU120 |
| H | FMN201 |
