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7KZY

Crystal structure of Plasmodium falciparum dihydroorotate dehydrogenase bound with Inhibitor DSM778 (3-methyl-N-(1-(5-methyl-1H-pyrazol-3-yl)ethyl)-4-(1-(6-(trifluoromethyl)pyridin-3-yl)cyclopropyl)-1H-pyrrole-2-carboxamide)

Functional Information from GO Data
ChainGOidnamespacecontents
A0004152molecular_functiondihydroorotate dehydrogenase activity
A0005737cellular_componentcytoplasm
A0006207biological_process'de novo' pyrimidine nucleobase biosynthetic process
A0016020cellular_componentmembrane
A0016627molecular_functionoxidoreductase activity, acting on the CH-CH group of donors
B0004152molecular_functiondihydroorotate dehydrogenase activity
B0005737cellular_componentcytoplasm
B0006207biological_process'de novo' pyrimidine nucleobase biosynthetic process
B0016020cellular_componentmembrane
B0016627molecular_functionoxidoreductase activity, acting on the CH-CH group of donors
Functional Information from PDB Data
site_idAC1
Number of Residues18
Detailsbinding site for residue XCM A 1001
ChainResidue
APHE171
AGLY226
AILE263
AARG265
ATYR528
ALEU531
AVAL532
AGLY535
AFMN1002
AHOH1216
ALEU172
ACYS175
AGLY181
AGLU182
ACYS184
AHIS185
APHE188
ALEU191

site_idAC2
Number of Residues23
Detailsbinding site for residue FMN A 1002
ChainResidue
AALA224
AALA225
AGLY226
ALYS229
ATHR249
AASN274
ACYS276
AASN342
ALYS429
ASER457
ASER477
AGLY478
ASER505
AGLY506
AGLY507
ATYR528
ASER529
AXCM1001
AORO1003
AHOH1112
AHOH1125
AHOH1127
AHOH1165

site_idAC3
Number of Residues11
Detailsbinding site for residue ORO A 1003
ChainResidue
ALYS229
AASN274
ACYS276
AGLY277
APHE278
AASN342
ASER345
AASN347
AASN458
ATHR459
AFMN1002

site_idAC4
Number of Residues18
Detailsbinding site for residue XCM B 1001
ChainResidue
BPHE171
BLEU172
BCYS175
BGLY181
BGLU182
BCYS184
BHIS185
BPHE188
BLEU191
BGLY226
BILE263
BARG265
BTYR528
BLEU531
BVAL532
BGLY535
BMET536
BHOH1195

site_idAC5
Number of Residues22
Detailsbinding site for residue FMN B 1002
ChainResidue
BALA224
BALA225
BGLY226
BLYS229
BTHR249
BASN274
BASN342
BLYS429
BSER457
BASN458
BSER477
BGLY478
BSER505
BGLY506
BGLY507
BTYR528
BSER529
BORO1003
BHOH1124
BHOH1132
BHOH1175
BHOH1190

site_idAC6
Number of Residues11
Detailsbinding site for residue ORO B 1003
ChainResidue
BASN347
BASN458
BTHR459
BFMN1002
BLYS229
BASN274
BCYS276
BGLY277
BPHE278
BASN342
BSER345

Functional Information from PROSITE/UniProt
site_idPS00911
Number of Residues20
DetailsDHODEHASE_1 Dihydroorotate dehydrogenase signature 1. SfieiGTITprgQtGNakPR
ChainResidueDetails
ASER243-ARG262

site_idPS00912
Number of Residues21
DetailsDHODEHASE_2 Dihydroorotate dehydrogenase signature 2. IIAsGGIfSgldAleKIeAGA
ChainResidueDetails
AILE502-ALA522

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Nucleophile => ECO:0000250
ChainResidueDetails
ASER345
BSER345

site_idSWS_FT_FI2
Number of Residues12
DetailsBINDING: BINDING => ECO:0000269|PubMed:16510978, ECO:0000269|PubMed:20702404
ChainResidueDetails
AALA225
BGLY507
BGLY535
BLEU558
ATHR249
ATHR459
AGLY507
AGLY535
ALEU558
BALA225
BTHR249
BTHR459

site_idSWS_FT_FI3
Number of Residues10
DetailsBINDING:
ChainResidueDetails
ALYS229
BPHE488
AASN274
AASN342
AASN347
APHE488
BLYS229
BASN274
BASN342
BASN347

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PDB entries from 2024-07-10

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