7KYK
Crystal structure of Plasmodium falciparum dihydroorotate dehydrogenase bound with Inhibitor DSM589 (ethyl 3-methyl-4-((4-(trifluoromethyl)benzo[d]oxazol-7-yl)methyl)-1H-pyrrole-2-carboxylate)
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0004152 | molecular_function | dihydroorotate dehydrogenase activity |
A | 0005737 | cellular_component | cytoplasm |
A | 0006207 | biological_process | 'de novo' pyrimidine nucleobase biosynthetic process |
A | 0016020 | cellular_component | membrane |
A | 0016627 | molecular_function | oxidoreductase activity, acting on the CH-CH group of donors |
B | 0004152 | molecular_function | dihydroorotate dehydrogenase activity |
B | 0005737 | cellular_component | cytoplasm |
B | 0006207 | biological_process | 'de novo' pyrimidine nucleobase biosynthetic process |
B | 0016020 | cellular_component | membrane |
B | 0016627 | molecular_function | oxidoreductase activity, acting on the CH-CH group of donors |
C | 0004152 | molecular_function | dihydroorotate dehydrogenase activity |
C | 0005737 | cellular_component | cytoplasm |
C | 0006207 | biological_process | 'de novo' pyrimidine nucleobase biosynthetic process |
C | 0016020 | cellular_component | membrane |
C | 0016627 | molecular_function | oxidoreductase activity, acting on the CH-CH group of donors |
D | 0004152 | molecular_function | dihydroorotate dehydrogenase activity |
D | 0005737 | cellular_component | cytoplasm |
D | 0006207 | biological_process | 'de novo' pyrimidine nucleobase biosynthetic process |
D | 0016020 | cellular_component | membrane |
D | 0016627 | molecular_function | oxidoreductase activity, acting on the CH-CH group of donors |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 12 |
Details | binding site for residue XAJ A 1001 |
Chain | Residue |
A | TYR168 |
A | LEU531 |
A | VAL532 |
A | GLY535 |
A | PHE171 |
A | GLY181 |
A | CYS184 |
A | HIS185 |
A | LEU187 |
A | LEU191 |
A | ILE263 |
A | ARG265 |
site_id | AC2 |
Number of Residues | 20 |
Details | binding site for residue FMN A 1002 |
Chain | Residue |
A | ALA224 |
A | ALA225 |
A | GLY226 |
A | THR249 |
A | ASN274 |
A | ASN342 |
A | LYS429 |
A | SER457 |
A | SER477 |
A | GLY478 |
A | SER505 |
A | GLY506 |
A | GLY507 |
A | TYR528 |
A | SER529 |
A | ORO1003 |
A | HOH1111 |
A | HOH1116 |
A | HOH1140 |
A | HOH1151 |
site_id | AC3 |
Number of Residues | 10 |
Details | binding site for residue ORO A 1003 |
Chain | Residue |
A | ASN274 |
A | CYS276 |
A | GLY277 |
A | PHE278 |
A | ASN342 |
A | SER345 |
A | ASN347 |
A | ASN458 |
A | THR459 |
A | FMN1002 |
site_id | AC4 |
Number of Residues | 13 |
Details | binding site for residue XAJ B 1001 |
Chain | Residue |
B | TYR168 |
B | PHE171 |
B | LEU172 |
B | CYS175 |
B | GLY181 |
B | HIS185 |
B | LEU187 |
B | LEU191 |
B | ILE263 |
B | ARG265 |
B | LEU531 |
B | VAL532 |
B | GLY535 |
site_id | AC5 |
Number of Residues | 22 |
Details | binding site for residue FMN B 1002 |
Chain | Residue |
B | ALA224 |
B | ALA225 |
B | GLY226 |
B | LYS229 |
B | THR249 |
B | ASN274 |
B | ASN342 |
B | LYS429 |
B | SER457 |
B | ASN458 |
B | SER477 |
B | GLY478 |
B | SER505 |
B | GLY506 |
B | GLY507 |
B | TYR528 |
B | SER529 |
B | ORO1003 |
B | HOH1105 |
B | HOH1113 |
B | HOH1130 |
B | HOH1137 |
site_id | AC6 |
Number of Residues | 11 |
Details | binding site for residue ORO B 1003 |
Chain | Residue |
B | LYS229 |
B | ASN274 |
B | CYS276 |
B | GLY277 |
B | PHE278 |
B | ASN342 |
B | SER345 |
B | ASN347 |
B | ASN458 |
B | THR459 |
B | FMN1002 |
site_id | AC7 |
Number of Residues | 14 |
Details | binding site for residue XAJ C 1001 |
Chain | Residue |
C | LEU531 |
C | VAL532 |
C | GLY535 |
C | TYR168 |
C | PHE171 |
C | LEU172 |
C | CYS175 |
C | GLY181 |
C | CYS184 |
C | HIS185 |
C | LEU187 |
C | LEU191 |
C | ILE263 |
C | ARG265 |
site_id | AC8 |
Number of Residues | 21 |
Details | binding site for residue FMN C 1002 |
Chain | Residue |
C | ALA224 |
C | ALA225 |
C | GLY226 |
C | LYS229 |
C | THR249 |
C | ASN274 |
C | ASN342 |
C | LYS429 |
C | SER457 |
C | SER477 |
C | GLY478 |
C | SER505 |
C | GLY506 |
C | GLY507 |
C | TYR528 |
C | SER529 |
C | ORO1003 |
C | HOH1112 |
C | HOH1113 |
C | HOH1120 |
C | HOH1136 |
site_id | AC9 |
Number of Residues | 11 |
Details | binding site for residue ORO C 1003 |
Chain | Residue |
C | LYS229 |
C | ASN274 |
C | CYS276 |
C | GLY277 |
C | PHE278 |
C | ASN342 |
C | SER345 |
C | ASN347 |
C | ASN458 |
C | THR459 |
C | FMN1002 |
site_id | AD1 |
Number of Residues | 15 |
Details | binding site for residue XAJ D 1001 |
Chain | Residue |
D | TYR168 |
D | PHE171 |
D | LEU172 |
D | CYS175 |
D | GLY181 |
D | CYS184 |
D | HIS185 |
D | LEU187 |
D | PHE188 |
D | LEU191 |
D | ILE263 |
D | ARG265 |
D | LEU531 |
D | VAL532 |
D | GLY535 |
site_id | AD2 |
Number of Residues | 20 |
Details | binding site for residue FMN D 1002 |
Chain | Residue |
D | ALA224 |
D | ALA225 |
D | GLY226 |
D | THR249 |
D | ASN274 |
D | ASN342 |
D | LYS429 |
D | SER457 |
D | ASN458 |
D | SER477 |
D | GLY478 |
D | SER505 |
D | GLY506 |
D | GLY507 |
D | TYR528 |
D | SER529 |
D | ORO1003 |
D | HOH1102 |
D | HOH1113 |
D | HOH1125 |
site_id | AD3 |
Number of Residues | 10 |
Details | binding site for residue ORO D 1003 |
Chain | Residue |
D | ASN274 |
D | CYS276 |
D | GLY277 |
D | PHE278 |
D | ASN342 |
D | SER345 |
D | ASN347 |
D | ASN458 |
D | THR459 |
D | FMN1002 |
Functional Information from PROSITE/UniProt
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 4 |
Details | ACT_SITE: Nucleophile => ECO:0000250 |
Chain | Residue | Details |
A | SER345 | |
B | SER345 | |
C | SER345 | |
D | SER345 |
site_id | SWS_FT_FI2 |
Number of Residues | 24 |
Details | BINDING: BINDING => ECO:0000269|PubMed:16510978, ECO:0000269|PubMed:20702404 |
Chain | Residue | Details |
A | ALA225 | |
B | GLY507 | |
B | GLY535 | |
B | LEU558 | |
C | ALA225 | |
C | THR249 | |
C | THR459 | |
C | GLY507 | |
C | GLY535 | |
C | LEU558 | |
D | ALA225 | |
A | THR249 | |
D | THR249 | |
D | THR459 | |
D | GLY507 | |
D | GLY535 | |
D | LEU558 | |
A | THR459 | |
A | GLY507 | |
A | GLY535 | |
A | LEU558 | |
B | ALA225 | |
B | THR249 | |
B | THR459 |
site_id | SWS_FT_FI3 |
Number of Residues | 20 |
Details | BINDING: |
Chain | Residue | Details |
A | LYS229 | |
B | PHE488 | |
C | LYS229 | |
C | ASN274 | |
C | ASN342 | |
C | ASN347 | |
C | PHE488 | |
D | LYS229 | |
D | ASN274 | |
D | ASN342 | |
D | ASN347 | |
A | ASN274 | |
D | PHE488 | |
A | ASN342 | |
A | ASN347 | |
A | PHE488 | |
B | LYS229 | |
B | ASN274 | |
B | ASN342 | |
B | ASN347 |