Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

7KM1

Dihydrodipicolinate synthase (DHDPS) from C.jejuni, H59N mutant with pyruvate bound in the active site and R,R-bislysine bound at the allosteric site

Functional Information from GO Data
ChainGOidnamespacecontents
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0008840molecular_function4-hydroxy-tetrahydrodipicolinate synthase activity
A0009085biological_processlysine biosynthetic process
A0009089biological_processlysine biosynthetic process via diaminopimelate
A0016829molecular_functionlyase activity
A0019877biological_processdiaminopimelate biosynthetic process
A0044281biological_processsmall molecule metabolic process
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0008840molecular_function4-hydroxy-tetrahydrodipicolinate synthase activity
B0009085biological_processlysine biosynthetic process
B0009089biological_processlysine biosynthetic process via diaminopimelate
B0016829molecular_functionlyase activity
B0019877biological_processdiaminopimelate biosynthetic process
B0044281biological_processsmall molecule metabolic process
C0005737cellular_componentcytoplasm
C0005829cellular_componentcytosol
C0008840molecular_function4-hydroxy-tetrahydrodipicolinate synthase activity
C0009085biological_processlysine biosynthetic process
C0009089biological_processlysine biosynthetic process via diaminopimelate
C0016829molecular_functionlyase activity
C0019877biological_processdiaminopimelate biosynthetic process
C0044281biological_processsmall molecule metabolic process
D0005737cellular_componentcytoplasm
D0005829cellular_componentcytosol
D0008840molecular_function4-hydroxy-tetrahydrodipicolinate synthase activity
D0009085biological_processlysine biosynthetic process
D0009089biological_processlysine biosynthetic process via diaminopimelate
D0016829molecular_functionlyase activity
D0019877biological_processdiaminopimelate biosynthetic process
D0044281biological_processsmall molecule metabolic process
E0005737cellular_componentcytoplasm
E0005829cellular_componentcytosol
E0008840molecular_function4-hydroxy-tetrahydrodipicolinate synthase activity
E0009085biological_processlysine biosynthetic process
E0009089biological_processlysine biosynthetic process via diaminopimelate
E0016829molecular_functionlyase activity
E0019877biological_processdiaminopimelate biosynthetic process
E0044281biological_processsmall molecule metabolic process
F0005737cellular_componentcytoplasm
F0005829cellular_componentcytosol
F0008840molecular_function4-hydroxy-tetrahydrodipicolinate synthase activity
F0009085biological_processlysine biosynthetic process
F0009089biological_processlysine biosynthetic process via diaminopimelate
F0016829molecular_functionlyase activity
F0019877biological_processdiaminopimelate biosynthetic process
F0044281biological_processsmall molecule metabolic process
Functional Information from PROSITE/UniProt
site_idPS00665
Number of Residues18
DetailsDHDPS_1 Dihydrodipicolinate synthase signature 1. AVVpvGTTGESatltheE
ChainResidueDetails
AALA41-GLU58

site_idPS00666
Number of Residues32
DetailsDHDPS_2 Dihydrodipicolinate synthase signature 2. YNVPgrTgceIstdtiiklfrdcenIyGVKEA
ChainResidueDetails
ATYR137-ALA168

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsACT_SITE: Proton donor/acceptor => ECO:0000255|HAMAP-Rule:MF_00418
ChainResidueDetails
ATYR137
BTYR137
CTYR137
DTYR137
ETYR137
FTYR137

site_idSWS_FT_FI2
Number of Residues6
DetailsACT_SITE: Schiff-base intermediate with substrate => ECO:0000255|HAMAP-Rule:MF_00418
ChainResidueDetails
AKPI166
BKPI166
CKPI166
DKPI166
EKPI166
FKPI166

site_idSWS_FT_FI3
Number of Residues12
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00418
ChainResidueDetails
ATHR48
EILE207
FTHR48
FILE207
AILE207
BTHR48
BILE207
CTHR48
CILE207
DTHR48
DILE207
ETHR48

site_idSWS_FT_FI4
Number of Residues12
DetailsSITE: Part of a proton relay during catalysis => ECO:0000255|HAMAP-Rule:MF_00418
ChainResidueDetails
ATHR47
ETYR111
FTHR47
FTYR111
ATYR111
BTHR47
BTYR111
CTHR47
CTYR111
DTHR47
DTYR111
ETHR47

229380

PDB entries from 2024-12-25

PDB statisticsPDBj update infoContact PDBjnumon