Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

7EQD

STRUCTURE OF PHOTOSYNTHETIC LH1-RC SUPER-COMPLEX OF RHODOSPIRILLUM RUBRUM

Functional Information from GO Data

Chain	GOid	namespace	contents
0	0016020	cellular_component	membrane
0	0019684	biological_process	photosynthesis, light reaction
0	0030077	cellular_component	plasma membrane light-harvesting complex
1	0005886	cellular_component	plasma membrane
1	0016020	cellular_component	membrane
1	0016168	molecular_function	chlorophyll binding
1	0019684	biological_process	photosynthesis, light reaction
1	0019866	cellular_component	organelle inner membrane
1	0030076	cellular_component	light-harvesting complex
1	0030077	cellular_component	plasma membrane light-harvesting complex
1	0042314	molecular_function	bacteriochlorophyll binding
1	0046872	molecular_function	metal ion binding
2	0016020	cellular_component	membrane
2	0019684	biological_process	photosynthesis, light reaction
2	0030077	cellular_component	plasma membrane light-harvesting complex
3	0005886	cellular_component	plasma membrane
3	0016020	cellular_component	membrane
3	0016168	molecular_function	chlorophyll binding
3	0019684	biological_process	photosynthesis, light reaction
3	0019866	cellular_component	organelle inner membrane
3	0030076	cellular_component	light-harvesting complex
3	0030077	cellular_component	plasma membrane light-harvesting complex
3	0042314	molecular_function	bacteriochlorophyll binding
3	0046872	molecular_function	metal ion binding
4	0016020	cellular_component	membrane
4	0019684	biological_process	photosynthesis, light reaction
4	0030077	cellular_component	plasma membrane light-harvesting complex
5	0005886	cellular_component	plasma membrane
5	0016020	cellular_component	membrane
5	0016168	molecular_function	chlorophyll binding
5	0019684	biological_process	photosynthesis, light reaction
5	0019866	cellular_component	organelle inner membrane
5	0030076	cellular_component	light-harvesting complex
5	0030077	cellular_component	plasma membrane light-harvesting complex
5	0042314	molecular_function	bacteriochlorophyll binding
5	0046872	molecular_function	metal ion binding
6	0016020	cellular_component	membrane
6	0019684	biological_process	photosynthesis, light reaction
6	0030077	cellular_component	plasma membrane light-harvesting complex
7	0005886	cellular_component	plasma membrane
7	0016020	cellular_component	membrane
7	0016168	molecular_function	chlorophyll binding
7	0019684	biological_process	photosynthesis, light reaction
7	0019866	cellular_component	organelle inner membrane
7	0030076	cellular_component	light-harvesting complex
7	0030077	cellular_component	plasma membrane light-harvesting complex
7	0042314	molecular_function	bacteriochlorophyll binding
7	0046872	molecular_function	metal ion binding
8	0016020	cellular_component	membrane
8	0019684	biological_process	photosynthesis, light reaction
8	0030077	cellular_component	plasma membrane light-harvesting complex
9	0005886	cellular_component	plasma membrane
9	0016020	cellular_component	membrane
9	0016168	molecular_function	chlorophyll binding
9	0019684	biological_process	photosynthesis, light reaction
9	0019866	cellular_component	organelle inner membrane
9	0030076	cellular_component	light-harvesting complex
9	0030077	cellular_component	plasma membrane light-harvesting complex
9	0042314	molecular_function	bacteriochlorophyll binding
9	0046872	molecular_function	metal ion binding
A	0005886	cellular_component	plasma membrane
A	0016020	cellular_component	membrane
A	0016168	molecular_function	chlorophyll binding
A	0019684	biological_process	photosynthesis, light reaction
A	0019866	cellular_component	organelle inner membrane
A	0030076	cellular_component	light-harvesting complex
A	0030077	cellular_component	plasma membrane light-harvesting complex
A	0042314	molecular_function	bacteriochlorophyll binding
A	0046872	molecular_function	metal ion binding
B	0016020	cellular_component	membrane
B	0019684	biological_process	photosynthesis, light reaction
B	0030077	cellular_component	plasma membrane light-harvesting complex
D	0005886	cellular_component	plasma membrane
D	0016020	cellular_component	membrane
D	0016168	molecular_function	chlorophyll binding
D	0019684	biological_process	photosynthesis, light reaction
D	0019866	cellular_component	organelle inner membrane
D	0030076	cellular_component	light-harvesting complex
D	0030077	cellular_component	plasma membrane light-harvesting complex
D	0042314	molecular_function	bacteriochlorophyll binding
D	0046872	molecular_function	metal ion binding
E	0016020	cellular_component	membrane
E	0019684	biological_process	photosynthesis, light reaction
E	0030077	cellular_component	plasma membrane light-harvesting complex
F	0005886	cellular_component	plasma membrane
F	0016020	cellular_component	membrane
F	0016168	molecular_function	chlorophyll binding
F	0019684	biological_process	photosynthesis, light reaction
F	0019866	cellular_component	organelle inner membrane
F	0030076	cellular_component	light-harvesting complex
F	0030077	cellular_component	plasma membrane light-harvesting complex
F	0042314	molecular_function	bacteriochlorophyll binding
F	0046872	molecular_function	metal ion binding
G	0016020	cellular_component	membrane
G	0019684	biological_process	photosynthesis, light reaction
G	0030077	cellular_component	plasma membrane light-harvesting complex
H	0016020	cellular_component	membrane
H	0019684	biological_process	photosynthesis, light reaction
H	0030077	cellular_component	plasma membrane light-harvesting complex
I	0005886	cellular_component	plasma membrane
I	0016020	cellular_component	membrane
I	0016168	molecular_function	chlorophyll binding
I	0019684	biological_process	photosynthesis, light reaction
I	0019866	cellular_component	organelle inner membrane
I	0030076	cellular_component	light-harvesting complex
I	0030077	cellular_component	plasma membrane light-harvesting complex
I	0042314	molecular_function	bacteriochlorophyll binding
I	0046872	molecular_function	metal ion binding
J	0016020	cellular_component	membrane
J	0019684	biological_process	photosynthesis, light reaction
J	0030077	cellular_component	plasma membrane light-harvesting complex
K	0005886	cellular_component	plasma membrane
K	0016020	cellular_component	membrane
K	0016168	molecular_function	chlorophyll binding
K	0019684	biological_process	photosynthesis, light reaction
K	0019866	cellular_component	organelle inner membrane
K	0030076	cellular_component	light-harvesting complex
K	0030077	cellular_component	plasma membrane light-harvesting complex
K	0042314	molecular_function	bacteriochlorophyll binding
K	0046872	molecular_function	metal ion binding
L	0009772	biological_process	photosynthetic electron transport in photosystem II
L	0015979	biological_process	photosynthesis
L	0016020	cellular_component	membrane
L	0016168	molecular_function	chlorophyll binding
L	0019684	biological_process	photosynthesis, light reaction
L	0030077	cellular_component	plasma membrane light-harvesting complex
L	0042314	molecular_function	bacteriochlorophyll binding
L	0042717	cellular_component	plasma membrane-derived chromatophore membrane
L	0046872	molecular_function	metal ion binding
M	0009772	biological_process	photosynthetic electron transport in photosystem II
M	0015979	biological_process	photosynthesis
M	0016020	cellular_component	membrane
M	0016168	molecular_function	chlorophyll binding
M	0019684	biological_process	photosynthesis, light reaction
M	0030077	cellular_component	plasma membrane light-harvesting complex
M	0042314	molecular_function	bacteriochlorophyll binding
M	0042717	cellular_component	plasma membrane-derived chromatophore membrane
M	0046872	molecular_function	metal ion binding
N	0016020	cellular_component	membrane
N	0019684	biological_process	photosynthesis, light reaction
N	0030077	cellular_component	plasma membrane light-harvesting complex
O	0005886	cellular_component	plasma membrane
O	0016020	cellular_component	membrane
O	0016168	molecular_function	chlorophyll binding
O	0019684	biological_process	photosynthesis, light reaction
O	0019866	cellular_component	organelle inner membrane
O	0030076	cellular_component	light-harvesting complex
O	0030077	cellular_component	plasma membrane light-harvesting complex
O	0042314	molecular_function	bacteriochlorophyll binding
O	0046872	molecular_function	metal ion binding
P	0016020	cellular_component	membrane
P	0019684	biological_process	photosynthesis, light reaction
P	0030077	cellular_component	plasma membrane light-harvesting complex
Q	0005886	cellular_component	plasma membrane
Q	0016020	cellular_component	membrane
Q	0016168	molecular_function	chlorophyll binding
Q	0019684	biological_process	photosynthesis, light reaction
Q	0019866	cellular_component	organelle inner membrane
Q	0030076	cellular_component	light-harvesting complex
Q	0030077	cellular_component	plasma membrane light-harvesting complex
Q	0042314	molecular_function	bacteriochlorophyll binding
Q	0046872	molecular_function	metal ion binding
R	0016020	cellular_component	membrane
R	0019684	biological_process	photosynthesis, light reaction
R	0030077	cellular_component	plasma membrane light-harvesting complex
S	0005886	cellular_component	plasma membrane
S	0016020	cellular_component	membrane
S	0016168	molecular_function	chlorophyll binding
S	0019684	biological_process	photosynthesis, light reaction
S	0019866	cellular_component	organelle inner membrane
S	0030076	cellular_component	light-harvesting complex
S	0030077	cellular_component	plasma membrane light-harvesting complex
S	0042314	molecular_function	bacteriochlorophyll binding
S	0046872	molecular_function	metal ion binding
T	0016020	cellular_component	membrane
T	0019684	biological_process	photosynthesis, light reaction
T	0030077	cellular_component	plasma membrane light-harvesting complex
U	0005886	cellular_component	plasma membrane
U	0016020	cellular_component	membrane
U	0016168	molecular_function	chlorophyll binding
U	0019684	biological_process	photosynthesis, light reaction
U	0019866	cellular_component	organelle inner membrane
U	0030076	cellular_component	light-harvesting complex
U	0030077	cellular_component	plasma membrane light-harvesting complex
U	0042314	molecular_function	bacteriochlorophyll binding
U	0046872	molecular_function	metal ion binding
V	0016020	cellular_component	membrane
V	0019684	biological_process	photosynthesis, light reaction
V	0030077	cellular_component	plasma membrane light-harvesting complex
W	0005886	cellular_component	plasma membrane
W	0016020	cellular_component	membrane
W	0016168	molecular_function	chlorophyll binding
W	0019684	biological_process	photosynthesis, light reaction
W	0019866	cellular_component	organelle inner membrane
W	0030076	cellular_component	light-harvesting complex
W	0030077	cellular_component	plasma membrane light-harvesting complex
W	0042314	molecular_function	bacteriochlorophyll binding
W	0046872	molecular_function	metal ion binding
X	0016020	cellular_component	membrane
X	0019684	biological_process	photosynthesis, light reaction
X	0030077	cellular_component	plasma membrane light-harvesting complex
Y	0005886	cellular_component	plasma membrane
Y	0016020	cellular_component	membrane
Y	0016168	molecular_function	chlorophyll binding
Y	0019684	biological_process	photosynthesis, light reaction
Y	0019866	cellular_component	organelle inner membrane
Y	0030076	cellular_component	light-harvesting complex
Y	0030077	cellular_component	plasma membrane light-harvesting complex
Y	0042314	molecular_function	bacteriochlorophyll binding
Y	0046872	molecular_function	metal ion binding
Z	0016020	cellular_component	membrane
Z	0019684	biological_process	photosynthesis, light reaction
Z	0030077	cellular_component	plasma membrane light-harvesting complex

Functional Information from PROSITE/UniProt

site_id	PS00244
Number of Residues	27
Details	REACTION_CENTER Photosynthetic reaction center proteins signature. NfhynPaHmlGitlffttclalAlHGS

Chain	Residue	Details
L	ASN167-SER193
M	ASN194-ALA220

site_id	PS00968
Number of Residues	19
Details	ANTENNA_COMP_ALPHA Antenna complexes alpha subunits signature. VlALlIHfilLSTerfNWL

Chain	Residue	Details
3	VAL23-LEU41

site_id	PS00969
Number of Residues	32
Details	ANTENNA_COMP_BETA Antenna complexes beta subunits signature. EakefHkiftsSilvFfgvAafAHllvwiwrP

Chain	Residue	Details
2	GLU16-PRO47

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	304
Details	TOPO_DOM: Cytoplasmic => ECO:0000255

Chain	Residue	Details
B	GLU3-LYS22
X	GLU3-LYS22
Z	GLU3-LYS22
2	GLU3-LYS22
4	GLU3-LYS22
6	GLU3-LYS22
8	GLU3-LYS22
0	GLU3-LYS22
E	GLU3-LYS22
G	GLU3-LYS22
J	GLU3-LYS22
N	GLU3-LYS22
P	GLU3-LYS22
R	GLU3-LYS22
T	GLU3-LYS22
V	GLU3-LYS22

site_id	SWS_FT_FI2
Number of Residues	352
Details	TRANSMEM: Helical => ECO:0000255

Chain	Residue	Details
B	ILE23-TRP45
X	ILE23-TRP45
Z	ILE23-TRP45
2	ILE23-TRP45
4	ILE23-TRP45
6	ILE23-TRP45
8	ILE23-TRP45
0	ILE23-TRP45
E	ILE23-TRP45
G	ILE23-TRP45
J	ILE23-TRP45
N	ILE23-TRP45
P	ILE23-TRP45
R	ILE23-TRP45
T	ILE23-TRP45
V	ILE23-TRP45

site_id	SWS_FT_FI3
Number of Residues	160
Details	TOPO_DOM: Periplasmic => ECO:0000255

Chain	Residue	Details
B	ARG46-SER56
X	ARG46-SER56
Z	ARG46-SER56
2	ARG46-SER56
4	ARG46-SER56
6	ARG46-SER56
8	ARG46-SER56
0	ARG46-SER56
E	ARG46-SER56
G	ARG46-SER56
J	ARG46-SER56
N	ARG46-SER56
P	ARG46-SER56
R	ARG46-SER56
T	ARG46-SER56
V	ARG46-SER56

site_id	SWS_FT_FI4
Number of Residues	32
Details	BINDING: axial binding residue => ECO:0000255

Chain	Residue	Details
B	HIS21
N	HIS39
P	HIS21
P	HIS39
R	HIS21
R	HIS39
T	HIS21
T	HIS39
V	HIS21
V	HIS39
X	HIS21
B	HIS39
X	HIS39
Z	HIS21
Z	HIS39
2	HIS21
2	HIS39
4	HIS21
4	HIS39
6	HIS21
6	HIS39
8	HIS21
E	HIS21
8	HIS39
0	HIS21
0	HIS39
E	HIS39
G	HIS21
G	HIS39
J	HIS21
J	HIS39
N	HIS21

site_id	SWS_FT_FI5
Number of Residues	16
Details	MOD_RES: N-formylmethionine => ECO:0000305\|DOI:10.1016/0014-5793(81)80778-8

Chain	Residue	Details
A	FME1
W	FME1
Y	FME1
1	FME1
3	FME1
5	FME1
7	FME1
9	FME1
D	FME1
F	FME1
I	FME1
K	FME1
O	FME1
Q	FME1
S	FME1
U	FME1

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)