7EA3

Intact Ypt32-TRAPPII (dimer).

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0003674	molecular_function	molecular_function
A	0005515	molecular_function	protein binding
A	0005634	cellular_component	nucleus
A	0005737	cellular_component	cytoplasm
A	0005794	cellular_component	Golgi apparatus
A	0005829	cellular_component	cytosol
A	0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
A	0006891	biological_process	intra-Golgi vesicle-mediated transport
A	0030008	cellular_component	TRAPP complex
A	0032991	cellular_component	protein-containing complex
A	0034498	biological_process	early endosome to Golgi transport
A	0042147	biological_process	retrograde transport, endosome to Golgi
A	0065003	biological_process	protein-containing complex assembly
A	1990071	cellular_component	TRAPPII protein complex
B	0000407	cellular_component	phagophore assembly site
B	0003674	molecular_function	molecular_function
B	0005515	molecular_function	protein binding
B	0005783	cellular_component	endoplasmic reticulum
B	0005794	cellular_component	Golgi apparatus
B	0005801	cellular_component	cis-Golgi network
B	0005802	cellular_component	trans-Golgi network
B	0005829	cellular_component	cytosol
B	0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
B	0006891	biological_process	intra-Golgi vesicle-mediated transport
B	0006914	biological_process	autophagy
B	0016192	biological_process	vesicle-mediated transport
B	0016236	biological_process	macroautophagy
B	0016239	biological_process	positive regulation of macroautophagy
B	0030008	cellular_component	TRAPP complex
B	0031503	biological_process	protein-containing complex localization
B	0034497	biological_process	protein localization to phagophore assembly site
B	0042147	biological_process	retrograde transport, endosome to Golgi
B	0043087	biological_process	regulation of GTPase activity
B	0048193	biological_process	Golgi vesicle transport
B	0065003	biological_process	protein-containing complex assembly
B	1990070	cellular_component	TRAPPI protein complex
B	1990071	cellular_component	TRAPPII protein complex
B	1990072	cellular_component	TRAPPIII protein complex
C	0000407	cellular_component	phagophore assembly site
C	0005085	molecular_function	guanyl-nucleotide exchange factor activity
C	0005515	molecular_function	protein binding
C	0005783	cellular_component	endoplasmic reticulum
C	0005794	cellular_component	Golgi apparatus
C	0005829	cellular_component	cytosol
C	0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
C	0006891	biological_process	intra-Golgi vesicle-mediated transport
C	0006914	biological_process	autophagy
C	0006995	biological_process	cellular response to nitrogen starvation
C	0016192	biological_process	vesicle-mediated transport
C	0016236	biological_process	macroautophagy
C	0030008	cellular_component	TRAPP complex
C	0032258	biological_process	cytoplasm to vacuole targeting by the Cvt pathway
C	0033106	cellular_component	cis-Golgi network membrane
C	0042147	biological_process	retrograde transport, endosome to Golgi
C	0048193	biological_process	Golgi vesicle transport
C	1990070	cellular_component	TRAPPI protein complex
C	1990071	cellular_component	TRAPPII protein complex
C	1990072	cellular_component	TRAPPIII protein complex
D	0000407	cellular_component	phagophore assembly site
D	0005085	molecular_function	guanyl-nucleotide exchange factor activity
D	0005515	molecular_function	protein binding
D	0005783	cellular_component	endoplasmic reticulum
D	0005794	cellular_component	Golgi apparatus
D	0005829	cellular_component	cytosol
D	0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
D	0006891	biological_process	intra-Golgi vesicle-mediated transport
D	0006914	biological_process	autophagy
D	0016192	biological_process	vesicle-mediated transport
D	0016236	biological_process	macroautophagy
D	0030008	cellular_component	TRAPP complex
D	0032991	cellular_component	protein-containing complex
D	0042147	biological_process	retrograde transport, endosome to Golgi
D	0048193	biological_process	Golgi vesicle transport
D	1990070	cellular_component	TRAPPI protein complex
D	1990071	cellular_component	TRAPPII protein complex
D	1990072	cellular_component	TRAPPIII protein complex
E	0000407	cellular_component	phagophore assembly site
E	0005085	molecular_function	guanyl-nucleotide exchange factor activity
E	0005515	molecular_function	protein binding
E	0005783	cellular_component	endoplasmic reticulum
E	0005794	cellular_component	Golgi apparatus
E	0005829	cellular_component	cytosol
E	0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
E	0006891	biological_process	intra-Golgi vesicle-mediated transport
E	0006914	biological_process	autophagy
E	0016192	biological_process	vesicle-mediated transport
E	0016236	biological_process	macroautophagy
E	0030008	cellular_component	TRAPP complex
E	0032991	cellular_component	protein-containing complex
E	0042147	biological_process	retrograde transport, endosome to Golgi
E	0048193	biological_process	Golgi vesicle transport
E	0051276	biological_process	chromosome organization
E	1990070	cellular_component	TRAPPI protein complex
E	1990071	cellular_component	TRAPPII protein complex
E	1990072	cellular_component	TRAPPIII protein complex
F	0000407	cellular_component	phagophore assembly site
F	0005085	molecular_function	guanyl-nucleotide exchange factor activity
F	0005515	molecular_function	protein binding
F	0005783	cellular_component	endoplasmic reticulum
F	0005794	cellular_component	Golgi apparatus
F	0005829	cellular_component	cytosol
F	0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
F	0006891	biological_process	intra-Golgi vesicle-mediated transport
F	0006914	biological_process	autophagy
F	0006995	biological_process	cellular response to nitrogen starvation
F	0016192	biological_process	vesicle-mediated transport
F	0016236	biological_process	macroautophagy
F	0030008	cellular_component	TRAPP complex
F	0032258	biological_process	cytoplasm to vacuole targeting by the Cvt pathway
F	0033106	cellular_component	cis-Golgi network membrane
F	0042147	biological_process	retrograde transport, endosome to Golgi
F	0048193	biological_process	Golgi vesicle transport
F	1990070	cellular_component	TRAPPI protein complex
F	1990071	cellular_component	TRAPPII protein complex
F	1990072	cellular_component	TRAPPIII protein complex
G	0000407	cellular_component	phagophore assembly site
G	0005085	molecular_function	guanyl-nucleotide exchange factor activity
G	0005515	molecular_function	protein binding
G	0005783	cellular_component	endoplasmic reticulum
G	0005794	cellular_component	Golgi apparatus
G	0005829	cellular_component	cytosol
G	0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
G	0006891	biological_process	intra-Golgi vesicle-mediated transport
G	0006914	biological_process	autophagy
G	0016192	biological_process	vesicle-mediated transport
G	0016236	biological_process	macroautophagy
G	0030008	cellular_component	TRAPP complex
G	0042147	biological_process	retrograde transport, endosome to Golgi
G	0048193	biological_process	Golgi vesicle transport
G	1990070	cellular_component	TRAPPI protein complex
G	1990071	cellular_component	TRAPPII protein complex
G	1990072	cellular_component	TRAPPIII protein complex
H	0000407	cellular_component	phagophore assembly site
H	0003674	molecular_function	molecular_function
H	0005515	molecular_function	protein binding
H	0005634	cellular_component	nucleus
H	0005737	cellular_component	cytoplasm
H	0005783	cellular_component	endoplasmic reticulum
H	0005794	cellular_component	Golgi apparatus
H	0005829	cellular_component	cytosol
H	0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
H	0006891	biological_process	intra-Golgi vesicle-mediated transport
H	0006914	biological_process	autophagy
H	0016192	biological_process	vesicle-mediated transport
H	0016236	biological_process	macroautophagy
H	0030008	cellular_component	TRAPP complex
H	0032991	cellular_component	protein-containing complex
H	0042147	biological_process	retrograde transport, endosome to Golgi
H	0065003	biological_process	protein-containing complex assembly
H	1990070	cellular_component	TRAPPI protein complex
H	1990071	cellular_component	TRAPPII protein complex
H	1990072	cellular_component	TRAPPIII protein complex
I	0005085	molecular_function	guanyl-nucleotide exchange factor activity
I	0005515	molecular_function	protein binding
I	0005769	cellular_component	early endosome
I	0005794	cellular_component	Golgi apparatus
I	0005802	cellular_component	trans-Golgi network
I	0005829	cellular_component	cytosol
I	0006891	biological_process	intra-Golgi vesicle-mediated transport
I	0006914	biological_process	autophagy
I	0016236	biological_process	macroautophagy
I	0032258	biological_process	cytoplasm to vacuole targeting by the Cvt pathway
I	0034498	biological_process	early endosome to Golgi transport
I	0042147	biological_process	retrograde transport, endosome to Golgi
I	0048193	biological_process	Golgi vesicle transport
I	1990071	cellular_component	TRAPPII protein complex
J	0005085	molecular_function	guanyl-nucleotide exchange factor activity
J	0005769	cellular_component	early endosome
J	0005794	cellular_component	Golgi apparatus
J	0005802	cellular_component	trans-Golgi network
J	0005829	cellular_component	cytosol
J	0006891	biological_process	intra-Golgi vesicle-mediated transport
J	0034498	biological_process	early endosome to Golgi transport
J	0042147	biological_process	retrograde transport, endosome to Golgi
J	1990071	cellular_component	TRAPPII protein complex
K	0005085	molecular_function	guanyl-nucleotide exchange factor activity
K	0005515	molecular_function	protein binding
K	0005737	cellular_component	cytoplasm
K	0005794	cellular_component	Golgi apparatus
K	0005802	cellular_component	trans-Golgi network
K	0005829	cellular_component	cytosol
K	0006891	biological_process	intra-Golgi vesicle-mediated transport
K	0042147	biological_process	retrograde transport, endosome to Golgi
K	0051274	biological_process	beta-glucan biosynthetic process
K	0065003	biological_process	protein-containing complex assembly
K	0071555	biological_process	cell wall organization
K	1990071	cellular_component	TRAPPII protein complex
L	0000139	cellular_component	Golgi membrane
L	0000166	molecular_function	nucleotide binding
L	0003924	molecular_function	GTPase activity
L	0005515	molecular_function	protein binding
L	0005525	molecular_function	GTP binding
L	0005741	cellular_component	mitochondrial outer membrane
L	0005768	cellular_component	endosome
L	0005794	cellular_component	Golgi apparatus
L	0005829	cellular_component	cytosol
L	0005935	cellular_component	cellular bud neck
L	0006887	biological_process	exocytosis
L	0006914	biological_process	autophagy
L	0015031	biological_process	protein transport
L	0016192	biological_process	vesicle-mediated transport
L	0034498	biological_process	early endosome to Golgi transport
L	0055037	cellular_component	recycling endosome
N	0003674	molecular_function	molecular_function
N	0005515	molecular_function	protein binding
N	0005634	cellular_component	nucleus
N	0005737	cellular_component	cytoplasm
N	0005794	cellular_component	Golgi apparatus
N	0005829	cellular_component	cytosol
N	0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
N	0006891	biological_process	intra-Golgi vesicle-mediated transport
N	0030008	cellular_component	TRAPP complex
N	0032991	cellular_component	protein-containing complex
N	0034498	biological_process	early endosome to Golgi transport
N	0042147	biological_process	retrograde transport, endosome to Golgi
N	0065003	biological_process	protein-containing complex assembly
N	1990071	cellular_component	TRAPPII protein complex
O	0000407	cellular_component	phagophore assembly site
O	0003674	molecular_function	molecular_function
O	0005515	molecular_function	protein binding
O	0005783	cellular_component	endoplasmic reticulum
O	0005794	cellular_component	Golgi apparatus
O	0005801	cellular_component	cis-Golgi network
O	0005802	cellular_component	trans-Golgi network
O	0005829	cellular_component	cytosol
O	0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
O	0006891	biological_process	intra-Golgi vesicle-mediated transport
O	0006914	biological_process	autophagy
O	0016192	biological_process	vesicle-mediated transport
O	0016236	biological_process	macroautophagy
O	0016239	biological_process	positive regulation of macroautophagy
O	0030008	cellular_component	TRAPP complex
O	0031503	biological_process	protein-containing complex localization
O	0034497	biological_process	protein localization to phagophore assembly site
O	0042147	biological_process	retrograde transport, endosome to Golgi
O	0043087	biological_process	regulation of GTPase activity
O	0048193	biological_process	Golgi vesicle transport
O	0065003	biological_process	protein-containing complex assembly
O	1990070	cellular_component	TRAPPI protein complex
O	1990071	cellular_component	TRAPPII protein complex
O	1990072	cellular_component	TRAPPIII protein complex
P	0000407	cellular_component	phagophore assembly site
P	0005085	molecular_function	guanyl-nucleotide exchange factor activity
P	0005515	molecular_function	protein binding
P	0005783	cellular_component	endoplasmic reticulum
P	0005794	cellular_component	Golgi apparatus
P	0005829	cellular_component	cytosol
P	0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
P	0006891	biological_process	intra-Golgi vesicle-mediated transport
P	0006914	biological_process	autophagy
P	0006995	biological_process	cellular response to nitrogen starvation
P	0016192	biological_process	vesicle-mediated transport
P	0016236	biological_process	macroautophagy
P	0030008	cellular_component	TRAPP complex
P	0032258	biological_process	cytoplasm to vacuole targeting by the Cvt pathway
P	0033106	cellular_component	cis-Golgi network membrane
P	0042147	biological_process	retrograde transport, endosome to Golgi
P	0048193	biological_process	Golgi vesicle transport
P	1990070	cellular_component	TRAPPI protein complex
P	1990071	cellular_component	TRAPPII protein complex
P	1990072	cellular_component	TRAPPIII protein complex
Q	0000407	cellular_component	phagophore assembly site
Q	0005085	molecular_function	guanyl-nucleotide exchange factor activity
Q	0005515	molecular_function	protein binding
Q	0005783	cellular_component	endoplasmic reticulum
Q	0005794	cellular_component	Golgi apparatus
Q	0005829	cellular_component	cytosol
Q	0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
Q	0006891	biological_process	intra-Golgi vesicle-mediated transport
Q	0006914	biological_process	autophagy
Q	0016192	biological_process	vesicle-mediated transport
Q	0016236	biological_process	macroautophagy
Q	0030008	cellular_component	TRAPP complex
Q	0032991	cellular_component	protein-containing complex
Q	0042147	biological_process	retrograde transport, endosome to Golgi
Q	0048193	biological_process	Golgi vesicle transport
Q	1990070	cellular_component	TRAPPI protein complex
Q	1990071	cellular_component	TRAPPII protein complex
Q	1990072	cellular_component	TRAPPIII protein complex
R	0000407	cellular_component	phagophore assembly site
R	0005085	molecular_function	guanyl-nucleotide exchange factor activity
R	0005515	molecular_function	protein binding
R	0005783	cellular_component	endoplasmic reticulum
R	0005794	cellular_component	Golgi apparatus
R	0005829	cellular_component	cytosol
R	0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
R	0006891	biological_process	intra-Golgi vesicle-mediated transport
R	0006914	biological_process	autophagy
R	0016192	biological_process	vesicle-mediated transport
R	0016236	biological_process	macroautophagy
R	0030008	cellular_component	TRAPP complex
R	0032991	cellular_component	protein-containing complex
R	0042147	biological_process	retrograde transport, endosome to Golgi
R	0048193	biological_process	Golgi vesicle transport
R	0051276	biological_process	chromosome organization
R	1990070	cellular_component	TRAPPI protein complex
R	1990071	cellular_component	TRAPPII protein complex
R	1990072	cellular_component	TRAPPIII protein complex
S	0000407	cellular_component	phagophore assembly site
S	0005085	molecular_function	guanyl-nucleotide exchange factor activity
S	0005515	molecular_function	protein binding
S	0005783	cellular_component	endoplasmic reticulum
S	0005794	cellular_component	Golgi apparatus
S	0005829	cellular_component	cytosol
S	0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
S	0006891	biological_process	intra-Golgi vesicle-mediated transport
S	0006914	biological_process	autophagy
S	0006995	biological_process	cellular response to nitrogen starvation
S	0016192	biological_process	vesicle-mediated transport
S	0016236	biological_process	macroautophagy
S	0030008	cellular_component	TRAPP complex
S	0032258	biological_process	cytoplasm to vacuole targeting by the Cvt pathway
S	0033106	cellular_component	cis-Golgi network membrane
S	0042147	biological_process	retrograde transport, endosome to Golgi
S	0048193	biological_process	Golgi vesicle transport
S	1990070	cellular_component	TRAPPI protein complex
S	1990071	cellular_component	TRAPPII protein complex
S	1990072	cellular_component	TRAPPIII protein complex
T	0000407	cellular_component	phagophore assembly site
T	0005085	molecular_function	guanyl-nucleotide exchange factor activity
T	0005515	molecular_function	protein binding
T	0005783	cellular_component	endoplasmic reticulum
T	0005794	cellular_component	Golgi apparatus
T	0005829	cellular_component	cytosol
T	0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
T	0006891	biological_process	intra-Golgi vesicle-mediated transport
T	0006914	biological_process	autophagy
T	0016192	biological_process	vesicle-mediated transport
T	0016236	biological_process	macroautophagy
T	0030008	cellular_component	TRAPP complex
T	0042147	biological_process	retrograde transport, endosome to Golgi
T	0048193	biological_process	Golgi vesicle transport
T	1990070	cellular_component	TRAPPI protein complex
T	1990071	cellular_component	TRAPPII protein complex
T	1990072	cellular_component	TRAPPIII protein complex
U	0000407	cellular_component	phagophore assembly site
U	0003674	molecular_function	molecular_function
U	0005515	molecular_function	protein binding
U	0005634	cellular_component	nucleus
U	0005737	cellular_component	cytoplasm
U	0005783	cellular_component	endoplasmic reticulum
U	0005794	cellular_component	Golgi apparatus
U	0005829	cellular_component	cytosol
U	0006888	biological_process	endoplasmic reticulum to Golgi vesicle-mediated transport
U	0006891	biological_process	intra-Golgi vesicle-mediated transport
U	0006914	biological_process	autophagy
U	0016192	biological_process	vesicle-mediated transport
U	0016236	biological_process	macroautophagy
U	0030008	cellular_component	TRAPP complex
U	0032991	cellular_component	protein-containing complex
U	0042147	biological_process	retrograde transport, endosome to Golgi
U	0065003	biological_process	protein-containing complex assembly
U	1990070	cellular_component	TRAPPI protein complex
U	1990071	cellular_component	TRAPPII protein complex
U	1990072	cellular_component	TRAPPIII protein complex
V	0005085	molecular_function	guanyl-nucleotide exchange factor activity
V	0005515	molecular_function	protein binding
V	0005769	cellular_component	early endosome
V	0005794	cellular_component	Golgi apparatus
V	0005802	cellular_component	trans-Golgi network
V	0005829	cellular_component	cytosol
V	0006891	biological_process	intra-Golgi vesicle-mediated transport
V	0006914	biological_process	autophagy
V	0016236	biological_process	macroautophagy
V	0032258	biological_process	cytoplasm to vacuole targeting by the Cvt pathway
V	0034498	biological_process	early endosome to Golgi transport
V	0042147	biological_process	retrograde transport, endosome to Golgi
V	0048193	biological_process	Golgi vesicle transport
V	1990071	cellular_component	TRAPPII protein complex
W	0005085	molecular_function	guanyl-nucleotide exchange factor activity
W	0005769	cellular_component	early endosome
W	0005794	cellular_component	Golgi apparatus
W	0005802	cellular_component	trans-Golgi network
W	0005829	cellular_component	cytosol
W	0006891	biological_process	intra-Golgi vesicle-mediated transport
W	0034498	biological_process	early endosome to Golgi transport
W	0042147	biological_process	retrograde transport, endosome to Golgi
W	1990071	cellular_component	TRAPPII protein complex
X	0005085	molecular_function	guanyl-nucleotide exchange factor activity
X	0005515	molecular_function	protein binding
X	0005737	cellular_component	cytoplasm
X	0005794	cellular_component	Golgi apparatus
X	0005802	cellular_component	trans-Golgi network
X	0005829	cellular_component	cytosol
X	0006891	biological_process	intra-Golgi vesicle-mediated transport
X	0042147	biological_process	retrograde transport, endosome to Golgi
X	0051274	biological_process	beta-glucan biosynthetic process
X	0065003	biological_process	protein-containing complex assembly
X	0071555	biological_process	cell wall organization
X	1990071	cellular_component	TRAPPII protein complex
Y	0000139	cellular_component	Golgi membrane
Y	0000166	molecular_function	nucleotide binding
Y	0003924	molecular_function	GTPase activity
Y	0005515	molecular_function	protein binding
Y	0005525	molecular_function	GTP binding
Y	0005741	cellular_component	mitochondrial outer membrane
Y	0005768	cellular_component	endosome
Y	0005794	cellular_component	Golgi apparatus
Y	0005829	cellular_component	cytosol
Y	0005935	cellular_component	cellular bud neck
Y	0006887	biological_process	exocytosis
Y	0006914	biological_process	autophagy
Y	0015031	biological_process	protein transport
Y	0016192	biological_process	vesicle-mediated transport
Y	0034498	biological_process	early endosome to Golgi transport
Y	0055037	cellular_component	recycling endosome

Functional Information from PROSITE/UniProt

site_id	PS00675
Number of Residues	14
Details	SIGMA54_INTERACT_1 Sigma-54 interaction domain ATP-binding region A signature. IVLiGDSGVGKsnL

Chain	Residue	Details
L	ILE16-LEU29

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	4
Details	Lipidation: {"description":"S-palmitoyl cysteine","evidences":[{"source":"PubMed","id":"15692564","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI2
Number of Residues	4
Details	Modified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"19779198","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI3
Number of Residues	16
Details	Motif: {"description":"Effector region","evidences":[{"evidenceCode":"ECO:0000305"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI4
Number of Residues	22
Details	Compositional bias: {"description":"Low complexity","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI5
Number of Residues	28
Details	Binding site: {"evidences":[{"evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

---