7DXH

Cryo-EM structure of PSII intermediate Psb28-PSII complex

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0009523	cellular_component	photosystem II
A	0009579	cellular_component	thylakoid
A	0009654	cellular_component	photosystem II oxygen evolving complex
A	0015979	biological_process	photosynthesis
A	0016020	cellular_component	membrane
A	0031676	cellular_component	plasma membrane-derived thylakoid membrane
A	0042651	cellular_component	thylakoid membrane
B	0009523	cellular_component	photosystem II
B	0009579	cellular_component	thylakoid
B	0015979	biological_process	photosynthesis
B	0016020	cellular_component	membrane
B	0031676	cellular_component	plasma membrane-derived thylakoid membrane
a	0005506	molecular_function	iron ion binding
a	0009055	molecular_function	electron transfer activity
a	0009523	cellular_component	photosystem II
a	0009579	cellular_component	thylakoid
a	0009635	biological_process	response to herbicide
a	0009772	biological_process	photosynthetic electron transport in photosystem II
a	0010242	molecular_function	oxygen evolving activity
a	0015979	biological_process	photosynthesis
a	0016020	cellular_component	membrane
a	0016168	molecular_function	chlorophyll binding
a	0016491	molecular_function	oxidoreductase activity
a	0016682	molecular_function	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
a	0019684	biological_process	photosynthesis, light reaction
a	0031676	cellular_component	plasma membrane-derived thylakoid membrane
a	0042651	cellular_component	thylakoid membrane
a	0046872	molecular_function	metal ion binding
b	0009521	cellular_component	photosystem
b	0009523	cellular_component	photosystem II
b	0009579	cellular_component	thylakoid
b	0009767	biological_process	photosynthetic electron transport chain
b	0009772	biological_process	photosynthetic electron transport in photosystem II
b	0015979	biological_process	photosynthesis
b	0016020	cellular_component	membrane
b	0016168	molecular_function	chlorophyll binding
b	0019684	biological_process	photosynthesis, light reaction
b	0031676	cellular_component	plasma membrane-derived thylakoid membrane
b	0046872	molecular_function	metal ion binding
c	0005737	cellular_component	cytoplasm
c	0009521	cellular_component	photosystem
c	0009523	cellular_component	photosystem II
c	0009579	cellular_component	thylakoid
c	0009767	biological_process	photosynthetic electron transport chain
c	0009772	biological_process	photosynthetic electron transport in photosystem II
c	0015979	biological_process	photosynthesis
c	0016020	cellular_component	membrane
c	0016168	molecular_function	chlorophyll binding
c	0019684	biological_process	photosynthesis, light reaction
c	0031676	cellular_component	plasma membrane-derived thylakoid membrane
c	0046872	molecular_function	metal ion binding
d	0005737	cellular_component	cytoplasm
d	0009523	cellular_component	photosystem II
d	0009579	cellular_component	thylakoid
d	0009772	biological_process	photosynthetic electron transport in photosystem II
d	0010242	molecular_function	oxygen evolving activity
d	0015979	biological_process	photosynthesis
d	0016020	cellular_component	membrane
d	0016168	molecular_function	chlorophyll binding
d	0016491	molecular_function	oxidoreductase activity
d	0019684	biological_process	photosynthesis, light reaction
d	0031676	cellular_component	plasma membrane-derived thylakoid membrane
d	0046872	molecular_function	metal ion binding
e	0005506	molecular_function	iron ion binding
e	0005737	cellular_component	cytoplasm
e	0009055	molecular_function	electron transfer activity
e	0009523	cellular_component	photosystem II
e	0009539	cellular_component	photosystem II reaction center
e	0009579	cellular_component	thylakoid
e	0009767	biological_process	photosynthetic electron transport chain
e	0015979	biological_process	photosynthesis
e	0016020	cellular_component	membrane
e	0019684	biological_process	photosynthesis, light reaction
e	0020037	molecular_function	heme binding
e	0031676	cellular_component	plasma membrane-derived thylakoid membrane
e	0042651	cellular_component	thylakoid membrane
e	0046872	molecular_function	metal ion binding
f	0005506	molecular_function	iron ion binding
f	0005737	cellular_component	cytoplasm
f	0009055	molecular_function	electron transfer activity
f	0009523	cellular_component	photosystem II
f	0009539	cellular_component	photosystem II reaction center
f	0009579	cellular_component	thylakoid
f	0009767	biological_process	photosynthetic electron transport chain
f	0015979	biological_process	photosynthesis
f	0016020	cellular_component	membrane
f	0019684	biological_process	photosynthesis, light reaction
f	0020037	molecular_function	heme binding
f	0031676	cellular_component	plasma membrane-derived thylakoid membrane
f	0042651	cellular_component	thylakoid membrane
f	0046872	molecular_function	metal ion binding
h	0009523	cellular_component	photosystem II
h	0009579	cellular_component	thylakoid
h	0015979	biological_process	photosynthesis
h	0016020	cellular_component	membrane
h	0031676	cellular_component	plasma membrane-derived thylakoid membrane
h	0042301	molecular_function	phosphate ion binding
h	0050821	biological_process	protein stabilization
i	0005737	cellular_component	cytoplasm
i	0009523	cellular_component	photosystem II
i	0009539	cellular_component	photosystem II reaction center
i	0009579	cellular_component	thylakoid
i	0015979	biological_process	photosynthesis
i	0016020	cellular_component	membrane
i	0031676	cellular_component	plasma membrane-derived thylakoid membrane
i	0042651	cellular_component	thylakoid membrane
k	0005737	cellular_component	cytoplasm
k	0009523	cellular_component	photosystem II
k	0009539	cellular_component	photosystem II reaction center
k	0009579	cellular_component	thylakoid
k	0015979	biological_process	photosynthesis
k	0016020	cellular_component	membrane
k	0031676	cellular_component	plasma membrane-derived thylakoid membrane
k	0042651	cellular_component	thylakoid membrane
l	0005737	cellular_component	cytoplasm
l	0009523	cellular_component	photosystem II
l	0009539	cellular_component	photosystem II reaction center
l	0009579	cellular_component	thylakoid
l	0015979	biological_process	photosynthesis
l	0016020	cellular_component	membrane
l	0031676	cellular_component	plasma membrane-derived thylakoid membrane
l	0042651	cellular_component	thylakoid membrane
m	0005737	cellular_component	cytoplasm
m	0009523	cellular_component	photosystem II
m	0009579	cellular_component	thylakoid
m	0015979	biological_process	photosynthesis
m	0016020	cellular_component	membrane
m	0019684	biological_process	photosynthesis, light reaction
m	0031676	cellular_component	plasma membrane-derived thylakoid membrane
m	0042651	cellular_component	thylakoid membrane
t	0009523	cellular_component	photosystem II
t	0009539	cellular_component	photosystem II reaction center
t	0009579	cellular_component	thylakoid
t	0015979	biological_process	photosynthesis
t	0016020	cellular_component	membrane
t	0031676	cellular_component	plasma membrane-derived thylakoid membrane
t	0042651	cellular_component	thylakoid membrane
x	0009523	cellular_component	photosystem II
x	0009579	cellular_component	thylakoid
x	0015979	biological_process	photosynthesis
x	0016020	cellular_component	membrane
x	0031676	cellular_component	plasma membrane-derived thylakoid membrane
y	0009523	cellular_component	photosystem II
y	0009579	cellular_component	thylakoid
y	0015979	biological_process	photosynthesis
y	0016020	cellular_component	membrane
y	0031676	cellular_component	plasma membrane-derived thylakoid membrane
z	0009523	cellular_component	photosystem II
z	0009539	cellular_component	photosystem II reaction center
z	0009579	cellular_component	thylakoid
z	0015979	biological_process	photosynthesis
z	0016020	cellular_component	membrane
z	0031676	cellular_component	plasma membrane-derived thylakoid membrane
z	0042549	biological_process	photosystem II stabilization
z	0042651	cellular_component	thylakoid membrane

Functional Information from PROSITE/UniProt

site_id	PS00244
Number of Residues	27
Details	REACTION_CENTER Photosynthetic reaction center proteins signature. NwtlnPfHmmGvagvlggallcAiHGA

Chain	Residue	Details
d	ASN190-ALA216
a	ASN191-SER217

---

site_id	PS00537
Number of Residues	15
Details	CYTOCHROME_B559 Cytochrome b559 subunits heme-binding site signature. ItSVRYwvIHSITIP

Chain	Residue	Details
e	ILE14-PRO28
f	ILE15-PRO29

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	5
Details	TOPO_DOM: Lumenal => ECO:0000269|PubMed:21499260

Chain	Residue	Details
y	GLU1-LEU6
z	VAL56-VAL62
c	LEU276-VAL290
c	LEU472-ASP473

---

site_id	SWS_FT_FI2
Number of Residues	14
Details	TRANSMEM: Helical => ECO:0000269|PubMed:21499260

Chain	Residue	Details
y	THR7-PHE21
z	ILE40-GLY55
c	LYS178-THR200
c	THR255-SER275
c	TRP291-ALA312
c	ARG447-SER471

---

site_id	SWS_FT_FI3
Number of Residues	8
Details	TOPO_DOM: Cytoplasmic => ECO:0000269|PubMed:21499260

Chain	Residue	Details
y	LEU22-LEU30
c	ASN201-THR254
c	GLN313-GLY446

---

site_id	SWS_FT_FI4
Number of Residues	11
Details	BINDING: axial binding residue => ECO:0000269|PubMed:21499260

Chain	Residue	Details
c	TRP35
c	PHE437
c	GLY440
b	HIS466
b	HIS469
c	LEU49
c	ALA52
c	VAL114
c	GLY128
c	ILE160
c	VAL233
c	GLY247
c	LEU426

---

site_id	SWS_FT_FI5
Number of Residues	1
Details	BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01496, ECO:0000269|PubMed:21499260, ECO:0000269|PubMed:23426624, ECO:0000303|PubMed:19433803

Chain	Residue	Details
c	GLU367
d	PHE261

---

site_id	SWS_FT_FI6
Number of Residues	3
Details	BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:21499260, ECO:0000269|PubMed:23426624, ECO:0000303|PubMed:19433803

Chain	Residue	Details
d	ASN142
d	HIS214
d	HIS268

---

site_id	SWS_FT_FI7
Number of Residues	1
Details	BINDING: axial binding residue => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:21499260, ECO:0000269|PubMed:23426624

Chain	Residue	Details
d	HIS197

---

site_id	SWS_FT_FI8
Number of Residues	2
Details	BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01379, ECO:0000269|PubMed:21499260, ECO:0000269|PubMed:23426624, ECO:0000303|PubMed:12518057, ECO:0000303|PubMed:19433803

Chain	Residue	Details
a	ASP170
a	ALA344

---

site_id	SWS_FT_FI9
Number of Residues	7
Details	BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01379, ECO:0000269|PubMed:21499260, ECO:0000269|PubMed:23426624, ECO:0000303|PubMed:19433803

Chain	Residue	Details
a	GLU189
a	HIS215
a	SER264
a	HIS272
a	HIS332
a	GLU333
a	ASP342

---

site_id	SWS_FT_FI10
Number of Residues	1
Details	BINDING: axial binding residue => ECO:0000255|HAMAP-Rule:MF_01379, ECO:0000269|PubMed:21499260, ECO:0000269|PubMed:23426624

Chain	Residue	Details
a	HIS198

---

site_id	SWS_FT_FI11
Number of Residues	1
Details	BINDING: BINDING => ECO:0000269|PubMed:19433803, ECO:0000269|PubMed:21499260

Chain	Residue	Details
a	MET214

---

site_id	SWS_FT_FI12
Number of Residues	1
Details	SITE: Tyrosine radical intermediate => ECO:0000255|HAMAP-Rule:MF_01379, ECO:0000269|PubMed:21499260, ECO:0000303|PubMed:12518057, ECO:0000303|PubMed:23426624

Chain	Residue	Details
a	TYR161

---

site_id	SWS_FT_FI13
Number of Residues	1
Details	SITE: Stabilizes free radical intermediate => ECO:0000255|HAMAP-Rule:MF_01379

Chain	Residue	Details
a	HIS190

---

site_id	SWS_FT_FI14
Number of Residues	1
Details	SITE: Cleavage; by CtpA => ECO:0000255|HAMAP-Rule:MF_01379

Chain	Residue	Details
a	ALA344

---