7CZL

Structural insights into a dimeric Psb27-photosystem II complex from a cyanobacterium Thermosynechococcus vulcanus

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0005506	molecular_function	iron ion binding
A	0009055	molecular_function	electron transfer activity
A	0009523	cellular_component	photosystem II
A	0009579	cellular_component	thylakoid
A	0009635	biological_process	response to herbicide
A	0009772	biological_process	photosynthetic electron transport in photosystem II
A	0010242	molecular_function	oxygen evolving activity
A	0015979	biological_process	photosynthesis
A	0016020	cellular_component	membrane
A	0016168	molecular_function	chlorophyll binding
A	0016491	molecular_function	oxidoreductase activity
A	0016682	molecular_function	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
A	0019684	biological_process	photosynthesis, light reaction
A	0031676	cellular_component	plasma membrane-derived thylakoid membrane
A	0042651	cellular_component	thylakoid membrane
A	0045156	molecular_function	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
A	0046872	molecular_function	metal ion binding
B	0009521	cellular_component	photosystem
B	0009523	cellular_component	photosystem II
B	0009579	cellular_component	thylakoid
B	0009767	biological_process	photosynthetic electron transport chain
B	0009772	biological_process	photosynthetic electron transport in photosystem II
B	0015979	biological_process	photosynthesis
B	0016020	cellular_component	membrane
B	0016168	molecular_function	chlorophyll binding
B	0019684	biological_process	photosynthesis, light reaction
B	0031676	cellular_component	plasma membrane-derived thylakoid membrane
B	0045156	molecular_function	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
B	0046872	molecular_function	metal ion binding
C	0005737	cellular_component	cytoplasm
C	0009521	cellular_component	photosystem
C	0009523	cellular_component	photosystem II
C	0009579	cellular_component	thylakoid
C	0009767	biological_process	photosynthetic electron transport chain
C	0009772	biological_process	photosynthetic electron transport in photosystem II
C	0015979	biological_process	photosynthesis
C	0016020	cellular_component	membrane
C	0016168	molecular_function	chlorophyll binding
C	0019684	biological_process	photosynthesis, light reaction
C	0031676	cellular_component	plasma membrane-derived thylakoid membrane
C	0045156	molecular_function	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
C	0046872	molecular_function	metal ion binding
D	0009523	cellular_component	photosystem II
D	0009579	cellular_component	thylakoid
D	0009772	biological_process	photosynthetic electron transport in photosystem II
D	0010242	molecular_function	oxygen evolving activity
D	0015979	biological_process	photosynthesis
D	0016020	cellular_component	membrane
D	0016168	molecular_function	chlorophyll binding
D	0016491	molecular_function	oxidoreductase activity
D	0019684	biological_process	photosynthesis, light reaction
D	0031676	cellular_component	plasma membrane-derived thylakoid membrane
D	0045156	molecular_function	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
D	0046872	molecular_function	metal ion binding
E	0009523	cellular_component	photosystem II
E	0009767	biological_process	photosynthetic electron transport chain
E	0015979	biological_process	photosynthesis
E	0016020	cellular_component	membrane
E	0019684	biological_process	photosynthesis, light reaction
E	0020037	molecular_function	heme binding
E	0046872	molecular_function	metal ion binding
F	0009523	cellular_component	photosystem II
F	0009539	cellular_component	photosystem II reaction center
F	0009767	biological_process	photosynthetic electron transport chain
F	0015979	biological_process	photosynthesis
F	0016020	cellular_component	membrane
F	0019684	biological_process	photosynthesis, light reaction
F	0020037	molecular_function	heme binding
H	0009523	cellular_component	photosystem II
H	0009579	cellular_component	thylakoid
H	0015979	biological_process	photosynthesis
H	0016020	cellular_component	membrane
H	0031676	cellular_component	plasma membrane-derived thylakoid membrane
H	0042301	molecular_function	phosphate ion binding
H	0050821	biological_process	protein stabilization
I	0009523	cellular_component	photosystem II
I	0009539	cellular_component	photosystem II reaction center
I	0015979	biological_process	photosynthesis
I	0016020	cellular_component	membrane
K	0005737	cellular_component	cytoplasm
K	0009523	cellular_component	photosystem II
K	0009539	cellular_component	photosystem II reaction center
K	0009579	cellular_component	thylakoid
K	0015979	biological_process	photosynthesis
K	0016020	cellular_component	membrane
K	0031676	cellular_component	plasma membrane-derived thylakoid membrane
L	0005737	cellular_component	cytoplasm
L	0009523	cellular_component	photosystem II
L	0009539	cellular_component	photosystem II reaction center
L	0009579	cellular_component	thylakoid
L	0015979	biological_process	photosynthesis
L	0016020	cellular_component	membrane
L	0031676	cellular_component	plasma membrane-derived thylakoid membrane
L	0042651	cellular_component	thylakoid membrane
M	0005737	cellular_component	cytoplasm
M	0009523	cellular_component	photosystem II
M	0009579	cellular_component	thylakoid
M	0015979	biological_process	photosynthesis
M	0016020	cellular_component	membrane
M	0019684	biological_process	photosynthesis, light reaction
M	0031676	cellular_component	plasma membrane-derived thylakoid membrane
M	0042651	cellular_component	thylakoid membrane
N	0009523	cellular_component	photosystem II
N	0010206	biological_process	photosystem II repair
N	0010207	biological_process	photosystem II assembly
T	0009523	cellular_component	photosystem II
T	0009539	cellular_component	photosystem II reaction center
T	0009579	cellular_component	thylakoid
T	0015979	biological_process	photosynthesis
T	0016020	cellular_component	membrane
T	0031676	cellular_component	plasma membrane-derived thylakoid membrane
T	0042651	cellular_component	thylakoid membrane
X	0009523	cellular_component	photosystem II
X	0009579	cellular_component	thylakoid
X	0015979	biological_process	photosynthesis
X	0016020	cellular_component	membrane
X	0031676	cellular_component	plasma membrane-derived thylakoid membrane
Y	0009523	cellular_component	photosystem II
Y	0009579	cellular_component	thylakoid
Y	0015979	biological_process	photosynthesis
Y	0016020	cellular_component	membrane
Y	0031676	cellular_component	plasma membrane-derived thylakoid membrane
Z	0009523	cellular_component	photosystem II
Z	0009539	cellular_component	photosystem II reaction center
Z	0009579	cellular_component	thylakoid
Z	0015979	biological_process	photosynthesis
Z	0016020	cellular_component	membrane
Z	0031676	cellular_component	plasma membrane-derived thylakoid membrane
Z	0042549	biological_process	photosystem II stabilization
Z	0042651	cellular_component	thylakoid membrane
a	0005506	molecular_function	iron ion binding
a	0009055	molecular_function	electron transfer activity
a	0009523	cellular_component	photosystem II
a	0009579	cellular_component	thylakoid
a	0009635	biological_process	response to herbicide
a	0009772	biological_process	photosynthetic electron transport in photosystem II
a	0010242	molecular_function	oxygen evolving activity
a	0015979	biological_process	photosynthesis
a	0016020	cellular_component	membrane
a	0016168	molecular_function	chlorophyll binding
a	0016491	molecular_function	oxidoreductase activity
a	0016682	molecular_function	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
a	0019684	biological_process	photosynthesis, light reaction
a	0031676	cellular_component	plasma membrane-derived thylakoid membrane
a	0042651	cellular_component	thylakoid membrane
a	0045156	molecular_function	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
a	0046872	molecular_function	metal ion binding
b	0009521	cellular_component	photosystem
b	0009523	cellular_component	photosystem II
b	0009579	cellular_component	thylakoid
b	0009767	biological_process	photosynthetic electron transport chain
b	0009772	biological_process	photosynthetic electron transport in photosystem II
b	0015979	biological_process	photosynthesis
b	0016020	cellular_component	membrane
b	0016168	molecular_function	chlorophyll binding
b	0019684	biological_process	photosynthesis, light reaction
b	0031676	cellular_component	plasma membrane-derived thylakoid membrane
b	0045156	molecular_function	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
b	0046872	molecular_function	metal ion binding
c	0005737	cellular_component	cytoplasm
c	0009521	cellular_component	photosystem
c	0009523	cellular_component	photosystem II
c	0009579	cellular_component	thylakoid
c	0009767	biological_process	photosynthetic electron transport chain
c	0009772	biological_process	photosynthetic electron transport in photosystem II
c	0015979	biological_process	photosynthesis
c	0016020	cellular_component	membrane
c	0016168	molecular_function	chlorophyll binding
c	0019684	biological_process	photosynthesis, light reaction
c	0031676	cellular_component	plasma membrane-derived thylakoid membrane
c	0045156	molecular_function	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
c	0046872	molecular_function	metal ion binding
d	0009523	cellular_component	photosystem II
d	0009579	cellular_component	thylakoid
d	0009772	biological_process	photosynthetic electron transport in photosystem II
d	0010242	molecular_function	oxygen evolving activity
d	0015979	biological_process	photosynthesis
d	0016020	cellular_component	membrane
d	0016168	molecular_function	chlorophyll binding
d	0016491	molecular_function	oxidoreductase activity
d	0019684	biological_process	photosynthesis, light reaction
d	0031676	cellular_component	plasma membrane-derived thylakoid membrane
d	0045156	molecular_function	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
d	0046872	molecular_function	metal ion binding
e	0009523	cellular_component	photosystem II
e	0009767	biological_process	photosynthetic electron transport chain
e	0015979	biological_process	photosynthesis
e	0016020	cellular_component	membrane
e	0019684	biological_process	photosynthesis, light reaction
e	0020037	molecular_function	heme binding
e	0046872	molecular_function	metal ion binding
f	0009523	cellular_component	photosystem II
f	0009539	cellular_component	photosystem II reaction center
f	0009767	biological_process	photosynthetic electron transport chain
f	0015979	biological_process	photosynthesis
f	0016020	cellular_component	membrane
f	0019684	biological_process	photosynthesis, light reaction
f	0020037	molecular_function	heme binding
h	0009523	cellular_component	photosystem II
h	0009579	cellular_component	thylakoid
h	0015979	biological_process	photosynthesis
h	0016020	cellular_component	membrane
h	0031676	cellular_component	plasma membrane-derived thylakoid membrane
h	0042301	molecular_function	phosphate ion binding
h	0050821	biological_process	protein stabilization
i	0009523	cellular_component	photosystem II
i	0009539	cellular_component	photosystem II reaction center
i	0015979	biological_process	photosynthesis
i	0016020	cellular_component	membrane
k	0005737	cellular_component	cytoplasm
k	0009523	cellular_component	photosystem II
k	0009539	cellular_component	photosystem II reaction center
k	0009579	cellular_component	thylakoid
k	0015979	biological_process	photosynthesis
k	0016020	cellular_component	membrane
k	0031676	cellular_component	plasma membrane-derived thylakoid membrane
l	0005737	cellular_component	cytoplasm
l	0009523	cellular_component	photosystem II
l	0009539	cellular_component	photosystem II reaction center
l	0009579	cellular_component	thylakoid
l	0015979	biological_process	photosynthesis
l	0016020	cellular_component	membrane
l	0031676	cellular_component	plasma membrane-derived thylakoid membrane
l	0042651	cellular_component	thylakoid membrane
m	0005737	cellular_component	cytoplasm
m	0009523	cellular_component	photosystem II
m	0009579	cellular_component	thylakoid
m	0015979	biological_process	photosynthesis
m	0016020	cellular_component	membrane
m	0019684	biological_process	photosynthesis, light reaction
m	0031676	cellular_component	plasma membrane-derived thylakoid membrane
m	0042651	cellular_component	thylakoid membrane
n	0009523	cellular_component	photosystem II
n	0010206	biological_process	photosystem II repair
n	0010207	biological_process	photosystem II assembly
t	0009523	cellular_component	photosystem II
t	0009539	cellular_component	photosystem II reaction center
t	0009579	cellular_component	thylakoid
t	0015979	biological_process	photosynthesis
t	0016020	cellular_component	membrane
t	0031676	cellular_component	plasma membrane-derived thylakoid membrane
t	0042651	cellular_component	thylakoid membrane
x	0009523	cellular_component	photosystem II
x	0009579	cellular_component	thylakoid
x	0015979	biological_process	photosynthesis
x	0016020	cellular_component	membrane
x	0031676	cellular_component	plasma membrane-derived thylakoid membrane
y	0009523	cellular_component	photosystem II
y	0009579	cellular_component	thylakoid
y	0015979	biological_process	photosynthesis
y	0016020	cellular_component	membrane
y	0031676	cellular_component	plasma membrane-derived thylakoid membrane
z	0009523	cellular_component	photosystem II
z	0009539	cellular_component	photosystem II reaction center
z	0009579	cellular_component	thylakoid
z	0015979	biological_process	photosynthesis
z	0016020	cellular_component	membrane
z	0031676	cellular_component	plasma membrane-derived thylakoid membrane
z	0042549	biological_process	photosystem II stabilization
z	0042651	cellular_component	thylakoid membrane

Functional Information from PROSITE/UniProt

site_id	PS00244
Number of Residues	27
Details	REACTION_CENTER Photosynthetic reaction center proteins signature. NwtlnPfHmmGvagvlggallcAiHGA

Chain	Residue	Details
D	ASN190-ALA216
A	ASN191-SER217

---

site_id	PS00537
Number of Residues	15
Details	CYTOCHROME_B559 Cytochrome b559 subunits heme-binding site signature. IfTVRWvaVHTLAVP

Chain	Residue	Details
F	ILE15-PRO29

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	20
Details	TOPO_DOM: Lumenal => ECO:0000269|PubMed:21499260

Chain	Residue	Details
X	THR2-ILE12
d	GLY5278-ARG5294
c	TRP5291-ALA5312
c	ARG5447-SER5471
x	THR2-ILE12
z	MET5001-LEU5007
z	VAL5056-VAL5062
D	GLY278-ARG294
d	CYS5040-THR5060
d	GLY5124-PRO5140
d	VAL5152-SER5165
d	GLY5207-GLU5227

---

site_id	SWS_FT_FI2
Number of Residues	32
Details	TRANSMEM: Helical => ECO:0000269|PubMed:21499260

Chain	Residue	Details
X	GLY13-ILE29
b	ILE5203-LEU5218
b	VAL5237-VAL5252
b	VAL5457-ARG5472
x	GLY13-ILE29
z	ALA5008-VAL5025
z	ILE5040-GLY5055
c	ASN5201-THR5254
c	GLN5313-GLY5446
b	ALA5021-SER5036
b	ILE5101-TRP5115
b	GLY5140-PHE5156

---

site_id	SWS_FT_FI3
Number of Residues	22
Details	TOPO_DOM: Cytoplasmic => ECO:0000269|PubMed:21499260

Chain	Residue	Details
X	ALA30-LEU41
x	ALA30-LEU41
d	TYR5141-ALA5151
d	GLY5228-THR5277
b	HIS5157-HIS5202
b	ALA5253-ALA5456

---

site_id	SWS_FT_FI4
Number of Residues	2
Details	BINDING: axial binding residue => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:23426624

Chain	Residue	Details
D	HIS117
C	PHE437
C	GLY440
c	TRP5035
c	LEU5049
c	ALA5052
c	VAL5114
c	GLY5128
c	ILE5160
c	VAL5233
c	GLY5247
d	HIS5117
c	LEU5426
c	PHE5437
c	GLY5440
b	HIS5216
b	HIS5455
b	HIS5466
b	HIS5469
C	ALA52
C	VAL114
C	GLY128
C	ILE160
C	VAL233
C	GLY247
C	LEU426

---

site_id	SWS_FT_FI5
Number of Residues	4
Details	BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:21499260, ECO:0000269|PubMed:23426624

Chain	Residue	Details
D	GLN129
D	PHE261
d	GLN5129
d	PHE5261

---

site_id	SWS_FT_FI6
Number of Residues	6
Details	BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:21499260, ECO:0000269|PubMed:23426624, ECO:0000303|PubMed:19433803

Chain	Residue	Details
D	ASN142
D	HIS214
D	HIS268
d	ASN5142
d	HIS5214
d	HIS5268

---

site_id	SWS_FT_FI7
Number of Residues	2
Details	BINDING: axial binding residue => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:21499260, ECO:0000269|PubMed:23426624

Chain	Residue	Details
D	HIS197
d	HIS5197

---

site_id	SWS_FT_FI8
Number of Residues	2
Details	BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01379, ECO:0000269|PubMed:21499260, ECO:0000269|PubMed:23426624, ECO:0000303|PubMed:12518057, ECO:0000303|PubMed:19433803

Chain	Residue	Details
A	ASP170
a	ASP5170

---

site_id	SWS_FT_FI9
Number of Residues	12
Details	BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01379, ECO:0000269|PubMed:21499260, ECO:0000269|PubMed:23426624, ECO:0000303|PubMed:19433803

Chain	Residue	Details
A	GLU189
a	HIS5272
a	HIS5332
a	GLU5333
A	HIS215
A	SER264
A	HIS272
A	HIS332
A	GLU333
a	GLU5189
a	HIS5215
a	SER5264

---

site_id	SWS_FT_FI10
Number of Residues	2
Details	BINDING: axial binding residue => ECO:0000255|HAMAP-Rule:MF_01379, ECO:0000269|PubMed:21499260, ECO:0000269|PubMed:23426624

Chain	Residue	Details
A	HIS198
a	HIS5198

---

site_id	SWS_FT_FI11
Number of Residues	2
Details	BINDING: BINDING => ECO:0000269|PubMed:19433803, ECO:0000269|PubMed:21499260

Chain	Residue	Details
A	MET214
a	MET5214

---

site_id	SWS_FT_FI12
Number of Residues	2
Details	SITE: Tyrosine radical intermediate => ECO:0000255|HAMAP-Rule:MF_01379, ECO:0000269|PubMed:21499260, ECO:0000303|PubMed:12518057, ECO:0000303|PubMed:23426624

Chain	Residue	Details
A	TYR161
a	TYR5161

---

site_id	SWS_FT_FI13
Number of Residues	2
Details	SITE: Stabilizes free radical intermediate => ECO:0000255|HAMAP-Rule:MF_01379

Chain	Residue	Details
A	HIS190
a	HIS5190

---