7C8A

Peroxiredoxin from Aeropyrum pernix K1 (ApPrx) C50S/F80C/C207S/C213S mutant modified with 2-(bromoacetyl)naphthalene(Naph@ApPrx*)

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0004601	molecular_function	peroxidase activity
A	0005737	cellular_component	cytoplasm
A	0005829	cellular_component	cytosol
A	0006979	biological_process	response to oxidative stress
A	0008379	molecular_function	thioredoxin peroxidase activity
A	0016209	molecular_function	antioxidant activity
A	0016491	molecular_function	oxidoreductase activity
A	0042744	biological_process	hydrogen peroxide catabolic process
A	0042802	molecular_function	identical protein binding
A	0045454	biological_process	cell redox homeostasis
A	0051920	molecular_function	peroxiredoxin activity
A	0055114	biological_process	obsolete oxidation-reduction process
A	0070301	biological_process	cellular response to hydrogen peroxide
A	0098869	biological_process	cellular oxidant detoxification
A	0140824	molecular_function	thioredoxin-dependent peroxiredoxin activity
B	0004601	molecular_function	peroxidase activity
B	0005737	cellular_component	cytoplasm
B	0005829	cellular_component	cytosol
B	0006979	biological_process	response to oxidative stress
B	0008379	molecular_function	thioredoxin peroxidase activity
B	0016209	molecular_function	antioxidant activity
B	0016491	molecular_function	oxidoreductase activity
B	0042744	biological_process	hydrogen peroxide catabolic process
B	0042802	molecular_function	identical protein binding
B	0045454	biological_process	cell redox homeostasis
B	0051920	molecular_function	peroxiredoxin activity
B	0055114	biological_process	obsolete oxidation-reduction process
B	0070301	biological_process	cellular response to hydrogen peroxide
B	0098869	biological_process	cellular oxidant detoxification
B	0140824	molecular_function	thioredoxin-dependent peroxiredoxin activity
C	0004601	molecular_function	peroxidase activity
C	0005737	cellular_component	cytoplasm
C	0005829	cellular_component	cytosol
C	0006979	biological_process	response to oxidative stress
C	0008379	molecular_function	thioredoxin peroxidase activity
C	0016209	molecular_function	antioxidant activity
C	0016491	molecular_function	oxidoreductase activity
C	0042744	biological_process	hydrogen peroxide catabolic process
C	0042802	molecular_function	identical protein binding
C	0045454	biological_process	cell redox homeostasis
C	0051920	molecular_function	peroxiredoxin activity
C	0055114	biological_process	obsolete oxidation-reduction process
C	0070301	biological_process	cellular response to hydrogen peroxide
C	0098869	biological_process	cellular oxidant detoxification
C	0140824	molecular_function	thioredoxin-dependent peroxiredoxin activity
D	0004601	molecular_function	peroxidase activity
D	0005737	cellular_component	cytoplasm
D	0005829	cellular_component	cytosol
D	0006979	biological_process	response to oxidative stress
D	0008379	molecular_function	thioredoxin peroxidase activity
D	0016209	molecular_function	antioxidant activity
D	0016491	molecular_function	oxidoreductase activity
D	0042744	biological_process	hydrogen peroxide catabolic process
D	0042802	molecular_function	identical protein binding
D	0045454	biological_process	cell redox homeostasis
D	0051920	molecular_function	peroxiredoxin activity
D	0055114	biological_process	obsolete oxidation-reduction process
D	0070301	biological_process	cellular response to hydrogen peroxide
D	0098869	biological_process	cellular oxidant detoxification
D	0140824	molecular_function	thioredoxin-dependent peroxiredoxin activity
E	0004601	molecular_function	peroxidase activity
E	0005737	cellular_component	cytoplasm
E	0005829	cellular_component	cytosol
E	0006979	biological_process	response to oxidative stress
E	0008379	molecular_function	thioredoxin peroxidase activity
E	0016209	molecular_function	antioxidant activity
E	0016491	molecular_function	oxidoreductase activity
E	0042744	biological_process	hydrogen peroxide catabolic process
E	0042802	molecular_function	identical protein binding
E	0045454	biological_process	cell redox homeostasis
E	0051920	molecular_function	peroxiredoxin activity
E	0055114	biological_process	obsolete oxidation-reduction process
E	0070301	biological_process	cellular response to hydrogen peroxide
E	0098869	biological_process	cellular oxidant detoxification
E	0140824	molecular_function	thioredoxin-dependent peroxiredoxin activity
F	0004601	molecular_function	peroxidase activity
F	0005737	cellular_component	cytoplasm
F	0005829	cellular_component	cytosol
F	0006979	biological_process	response to oxidative stress
F	0008379	molecular_function	thioredoxin peroxidase activity
F	0016209	molecular_function	antioxidant activity
F	0016491	molecular_function	oxidoreductase activity
F	0042744	biological_process	hydrogen peroxide catabolic process
F	0042802	molecular_function	identical protein binding
F	0045454	biological_process	cell redox homeostasis
F	0051920	molecular_function	peroxiredoxin activity
F	0055114	biological_process	obsolete oxidation-reduction process
F	0070301	biological_process	cellular response to hydrogen peroxide
F	0098869	biological_process	cellular oxidant detoxification
F	0140824	molecular_function	thioredoxin-dependent peroxiredoxin activity
G	0004601	molecular_function	peroxidase activity
G	0005737	cellular_component	cytoplasm
G	0005829	cellular_component	cytosol
G	0006979	biological_process	response to oxidative stress
G	0008379	molecular_function	thioredoxin peroxidase activity
G	0016209	molecular_function	antioxidant activity
G	0016491	molecular_function	oxidoreductase activity
G	0042744	biological_process	hydrogen peroxide catabolic process
G	0042802	molecular_function	identical protein binding
G	0045454	biological_process	cell redox homeostasis
G	0051920	molecular_function	peroxiredoxin activity
G	0055114	biological_process	obsolete oxidation-reduction process
G	0070301	biological_process	cellular response to hydrogen peroxide
G	0098869	biological_process	cellular oxidant detoxification
G	0140824	molecular_function	thioredoxin-dependent peroxiredoxin activity
H	0004601	molecular_function	peroxidase activity
H	0005737	cellular_component	cytoplasm
H	0005829	cellular_component	cytosol
H	0006979	biological_process	response to oxidative stress
H	0008379	molecular_function	thioredoxin peroxidase activity
H	0016209	molecular_function	antioxidant activity
H	0016491	molecular_function	oxidoreductase activity
H	0042744	biological_process	hydrogen peroxide catabolic process
H	0042802	molecular_function	identical protein binding
H	0045454	biological_process	cell redox homeostasis
H	0051920	molecular_function	peroxiredoxin activity
H	0055114	biological_process	obsolete oxidation-reduction process
H	0070301	biological_process	cellular response to hydrogen peroxide
H	0098869	biological_process	cellular oxidant detoxification
H	0140824	molecular_function	thioredoxin-dependent peroxiredoxin activity
I	0004601	molecular_function	peroxidase activity
I	0005737	cellular_component	cytoplasm
I	0005829	cellular_component	cytosol
I	0006979	biological_process	response to oxidative stress
I	0008379	molecular_function	thioredoxin peroxidase activity
I	0016209	molecular_function	antioxidant activity
I	0016491	molecular_function	oxidoreductase activity
I	0042744	biological_process	hydrogen peroxide catabolic process
I	0042802	molecular_function	identical protein binding
I	0045454	biological_process	cell redox homeostasis
I	0051920	molecular_function	peroxiredoxin activity
I	0055114	biological_process	obsolete oxidation-reduction process
I	0070301	biological_process	cellular response to hydrogen peroxide
I	0098869	biological_process	cellular oxidant detoxification
I	0140824	molecular_function	thioredoxin-dependent peroxiredoxin activity
J	0004601	molecular_function	peroxidase activity
J	0005737	cellular_component	cytoplasm
J	0005829	cellular_component	cytosol
J	0006979	biological_process	response to oxidative stress
J	0008379	molecular_function	thioredoxin peroxidase activity
J	0016209	molecular_function	antioxidant activity
J	0016491	molecular_function	oxidoreductase activity
J	0042744	biological_process	hydrogen peroxide catabolic process
J	0042802	molecular_function	identical protein binding
J	0045454	biological_process	cell redox homeostasis
J	0051920	molecular_function	peroxiredoxin activity
J	0055114	biological_process	obsolete oxidation-reduction process
J	0070301	biological_process	cellular response to hydrogen peroxide
J	0098869	biological_process	cellular oxidant detoxification
J	0140824	molecular_function	thioredoxin-dependent peroxiredoxin activity

Functional Information from PDB Data

site_id	AC1
Number of Residues	6
Details	binding site for residue FL3 A 301

Chain	Residue
A	SER78
A	CYS80
F	PRO43
F	ALA44
F	CIT302
F	HOH413

---

site_id	AC2
Number of Residues	11
Details	binding site for residue CIT A 302

Chain	Residue
A	SER50
A	ARG126
A	MET145
A	HOH446
B	ALA170
B	PRO188
B	PRO189
F	FL3301
A	THR47
A	PRO48
A	VAL49

---

site_id	AC3
Number of Residues	12
Details	binding site for residue CIT B 302

Chain	Residue
A	ALA170
A	PRO188
A	PRO189
B	THR47
B	PRO48
B	VAL49
B	SER50
B	ARG126
B	MET145
B	HOH405
B	HOH408
C	FL3301

---

site_id	AC4
Number of Residues	10
Details	binding site for residue CIT C 302

Chain	Residue
B	FL3301
C	THR47
C	PRO48
C	VAL49
C	SER50
C	ARG126
C	MET145
D	ALA170
D	PRO188
D	PRO189

---

site_id	AC5
Number of Residues	9
Details	binding site for residue CIT D 302

Chain	Residue
C	ALA170
C	PRO189
D	THR47
D	PRO48
D	VAL49
D	SER50
D	ARG126
D	MET145
J	FL3301

---

site_id	AC6
Number of Residues	10
Details	binding site for residue CIT E 302

Chain	Residue
E	THR47
E	PRO48
E	VAL49
E	SER50
E	ARG126
E	MET145
F	ALA170
F	PRO188
F	PRO189
H	FL3301

---

site_id	AC7
Number of Residues	10
Details	binding site for residue CIT F 302

Chain	Residue
A	FL3301
E	ALA170
E	PRO188
E	PRO189
F	THR47
F	PRO48
F	VAL49
F	SER50
F	ARG126
F	MET145

---

site_id	AC8
Number of Residues	10
Details	binding site for residue CIT G 302

Chain	Residue
G	THR47
G	PRO48
G	VAL49
G	SER50
G	ARG126
G	MET145
H	ALA170
H	PRO188
H	PRO189
I	FL3301

---

site_id	AC9
Number of Residues	10
Details	binding site for residue CIT H 302

Chain	Residue
E	FL3301
G	ALA170
G	PRO188
G	PRO189
H	THR47
H	PRO48
H	VAL49
H	SER50
H	ARG126
H	MET145

---

site_id	AD1
Number of Residues	9
Details	binding site for residue CIT I 302

Chain	Residue
G	FL3301
I	THR47
I	PRO48
I	VAL49
I	SER50
I	ARG126
I	MET145
J	ALA170
J	PRO189

---

site_id	AD2
Number of Residues	10
Details	binding site for residue CIT J 302

Chain	Residue
I	PRO188
I	PRO189
J	THR47
J	PRO48
J	VAL49
J	SER50
J	ARG126
J	MET145
D	FL3301
I	ALA170

---

site_id	AD3
Number of Residues	11
Details	binding site for Di-peptide FL3 B 301 and CYS B 80

Chain	Residue
B	SER78
B	VAL79
B	SER81
B	HIS82
B	ILE83
B	LYS84
C	PRO43
C	PHE46
C	THR47
C	HIS123
C	CIT302

---

site_id	AD4
Number of Residues	11
Details	binding site for Di-peptide FL3 C 301 and CYS C 80

Chain	Residue
B	PRO43
B	THR47
B	HIS123
B	CIT302
C	SER78
C	VAL79
C	SER81
C	HIS82
C	ILE83
C	LYS84
C	HOH477

---

site_id	AD5
Number of Residues	10
Details	binding site for Di-peptide FL3 D 301 and CYS D 80

Chain	Residue
D	SER78
D	VAL79
D	SER81
D	HIS82
D	ILE83
D	LYS84
J	PRO43
J	THR47
J	HIS123
J	CIT302

---

site_id	AD6
Number of Residues	11
Details	binding site for Di-peptide FL3 E 301 and CYS E 80

Chain	Residue
E	SER78
E	VAL79
E	SER81
E	HIS82
E	ILE83
E	LYS84
H	ALA44
H	PHE46
H	THR47
H	CIT302
H	HOH445

---

site_id	AD7
Number of Residues	10
Details	binding site for Di-peptide FL3 F 301 and CYS F 80

Chain	Residue
A	PRO43
A	THR47
A	HIS123
A	CIT302
F	SER78
F	VAL79
F	SER81
F	HIS82
F	ILE83
F	LYS84

---

site_id	AD8
Number of Residues	11
Details	binding site for Di-peptide FL3 G 301 and CYS G 80

Chain	Residue
G	SER78
G	VAL79
G	SER81
G	HIS82
G	ILE83
G	LYS84
I	PRO43
I	THR47
I	HIS123
I	CIT302
I	HOH421

---

site_id	AD9
Number of Residues	11
Details	binding site for Di-peptide FL3 H 301 and CYS H 80

Chain	Residue
E	PHE46
E	THR47
E	HIS123
E	CIT302
H	SER78
H	VAL79
H	SER81
H	HIS82
H	ILE83
H	LYS84
H	HOH465

---

site_id	AE1
Number of Residues	10
Details	binding site for Di-peptide FL3 I 301 and CYS I 80

Chain	Residue
G	PRO43
G	THR47
G	HIS123
G	CIT302
I	SER78
I	VAL79
I	SER81
I	HIS82
I	ILE83
I	LYS84

---

site_id	AE2
Number of Residues	12
Details	binding site for Di-peptide FL3 J 301 and CYS J 80

Chain	Residue
D	PRO43
D	PHE46
D	THR47
D	HIS123
D	CIT302
J	SER78
J	VAL79
J	SER81
J	HIS82
J	ILE83
J	LYS84
J	HOH453

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	10
Details	ACT_SITE: Cysteine sulfenic acid (-SOH) intermediate => ECO:0000255|HAMAP-Rule:MF_00401, ECO:0000269|PubMed:16214169, ECO:0000269|PubMed:18436649

Chain	Residue	Details
A	SER50
B	SER50
C	SER50
D	SER50
E	SER50
F	SER50
G	SER50
H	SER50
I	SER50
J	SER50

---

site_id	SWS_FT_FI2
Number of Residues	10
Details	BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00401, ECO:0000269|PubMed:19819903

Chain	Residue	Details
A	ARG126
B	ARG126
C	ARG126
D	ARG126
E	ARG126
F	ARG126
G	ARG126
H	ARG126
I	ARG126
J	ARG126

---