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7AAV

Human pre-Bact-2 spliceosome core structure

Functional Information from GO Data
ChainGOidnamespacecontents
80000398biological_processmRNA splicing, via spliceosome
80003723molecular_functionRNA binding
80003729molecular_functionmRNA binding
80005515molecular_functionprotein binding
80005634cellular_componentnucleus
80005654cellular_componentnucleoplasm
80005681cellular_componentspliceosomal complex
80006397biological_processmRNA processing
80008380biological_processRNA splicing
80016607cellular_componentnuclear speck
80071007cellular_componentU2-type catalytic step 2 spliceosome
80071013cellular_componentcatalytic step 2 spliceosome
81990403biological_processembryonic brain development
A0000244biological_processspliceosomal tri-snRNP complex assembly
A0000375biological_processRNA splicing, via transesterification reactions
A0000398biological_processmRNA splicing, via spliceosome
A0003723molecular_functionRNA binding
A0005515molecular_functionprotein binding
A0005634cellular_componentnucleus
A0005654cellular_componentnucleoplasm
A0005681cellular_componentspliceosomal complex
A0005682cellular_componentU5 snRNP
A0006397biological_processmRNA processing
A0008233molecular_functionpeptidase activity
A0008237molecular_functionmetallopeptidase activity
A0008380biological_processRNA splicing
A0016020cellular_componentmembrane
A0016607cellular_componentnuclear speck
A0017070molecular_functionU6 snRNA binding
A0030532cellular_componentsmall nuclear ribonucleoprotein complex
A0030619molecular_functionU1 snRNA binding
A0030620molecular_functionU2 snRNA binding
A0030623molecular_functionU5 snRNA binding
A0046540cellular_componentU4/U6 x U5 tri-snRNP complex
A0070530molecular_functionK63-linked polyubiquitin modification-dependent protein binding
A0071005cellular_componentU2-type precatalytic spliceosome
A0071006cellular_componentU2-type catalytic step 1 spliceosome
A0071007cellular_componentU2-type catalytic step 2 spliceosome
A0071013cellular_componentcatalytic step 2 spliceosome
A0071222biological_processcellular response to lipopolysaccharide
A0071356biological_processcellular response to tumor necrosis factor
A0097157molecular_functionpre-mRNA intronic binding
A0140492molecular_functionmetal-dependent deubiquitinase activity
G0000398biological_processmRNA splicing, via spliceosome
G0000974cellular_componentPrp19 complex
G0001650cellular_componentfibrillar center
G0005515molecular_functionprotein binding
G0005634cellular_componentnucleus
G0005654cellular_componentnucleoplasm
G0005662cellular_componentDNA replication factor A complex
G0005681cellular_componentspliceosomal complex
G0006397biological_processmRNA processing
G0008380biological_processRNA splicing
G0016607cellular_componentnuclear speck
G0031965cellular_componentnuclear membrane
G0034504biological_processprotein localization to nucleus
G0071007cellular_componentU2-type catalytic step 2 spliceosome
G0071013cellular_componentcatalytic step 2 spliceosome
G1900087biological_processpositive regulation of G1/S transition of mitotic cell cycle
I0000398biological_processmRNA splicing, via spliceosome
I0003723molecular_functionRNA binding
I0005515molecular_functionprotein binding
I0005634cellular_componentnucleus
I0005654cellular_componentnucleoplasm
I0005681cellular_componentspliceosomal complex
I0006397biological_processmRNA processing
I0008380biological_processRNA splicing
I0071005cellular_componentU2-type precatalytic spliceosome
I0071011cellular_componentprecatalytic spliceosome
K0000398biological_processmRNA splicing, via spliceosome
K0001527cellular_componentmicrofibril
K0003723molecular_functionRNA binding
K0005515molecular_functionprotein binding
K0005634cellular_componentnucleus
K0005654cellular_componentnucleoplasm
K0005681cellular_componentspliceosomal complex
K0005684cellular_componentU2-type spliceosomal complex
K0005813cellular_componentcentrosome
K0006397biological_processmRNA processing
K0008380biological_processRNA splicing
K0071005cellular_componentU2-type precatalytic spliceosome
L0000077biological_processDNA damage checkpoint signaling
L0000398biological_processmRNA splicing, via spliceosome
L0000974cellular_componentPrp19 complex
L0000977molecular_functionRNA polymerase II transcription regulatory region sequence-specific DNA binding
L0000981molecular_functionDNA-binding transcription factor activity, RNA polymerase II-specific
L0001228molecular_functionDNA-binding transcription activator activity, RNA polymerase II-specific
L0003677molecular_functionDNA binding
L0003723molecular_functionRNA binding
L0005515molecular_functionprotein binding
L0005634cellular_componentnucleus
L0005654cellular_componentnucleoplasm
L0005662cellular_componentDNA replication factor A complex
L0005681cellular_componentspliceosomal complex
L0005737cellular_componentcytoplasm
L0006281biological_processDNA repair
L0006357biological_processregulation of transcription by RNA polymerase II
L0006397biological_processmRNA processing
L0008380biological_processRNA splicing
L0016020cellular_componentmembrane
L0016607cellular_componentnuclear speck
L0042802molecular_functionidentical protein binding
L0045944biological_processpositive regulation of transcription by RNA polymerase II
L0071007cellular_componentU2-type catalytic step 2 spliceosome
L0071013cellular_componentcatalytic step 2 spliceosome
L0071987molecular_functionWD40-repeat domain binding
N0000398biological_processmRNA splicing, via spliceosome
N0003676molecular_functionnucleic acid binding
N0003677molecular_functionDNA binding
N0005515molecular_functionprotein binding
N0005634cellular_componentnucleus
N0005654cellular_componentnucleoplasm
N0005681cellular_componentspliceosomal complex
N0006397biological_processmRNA processing
N0008270molecular_functionzinc ion binding
N0008380biological_processRNA splicing
N0046540cellular_componentU4/U6 x U5 tri-snRNP complex
N0046872molecular_functionmetal ion binding
N0071005cellular_componentU2-type precatalytic spliceosome
P0000398biological_processmRNA splicing, via spliceosome
P0000974cellular_componentPrp19 complex
P0003676molecular_functionnucleic acid binding
P0003723molecular_functionRNA binding
P0005515molecular_functionprotein binding
P0005634cellular_componentnucleus
P0005654cellular_componentnucleoplasm
P0005681cellular_componentspliceosomal complex
P0005737cellular_componentcytoplasm
P0006397biological_processmRNA processing
P0008380biological_processRNA splicing
P0017070molecular_functionU6 snRNA binding
P0033120biological_processpositive regulation of RNA splicing
P0036002molecular_functionpre-mRNA binding
P0042307biological_processpositive regulation of protein import into nucleus
P0045292biological_processmRNA cis splicing, via spliceosome
P0046827biological_processpositive regulation of protein export from nucleus
P0046872molecular_functionmetal ion binding
P0048306molecular_functioncalcium-dependent protein binding
P0071006cellular_componentU2-type catalytic step 1 spliceosome
P0071007cellular_componentU2-type catalytic step 2 spliceosome
P0071013cellular_componentcatalytic step 2 spliceosome
P0071466biological_processcellular response to xenobiotic stimulus
q0000398biological_processmRNA splicing, via spliceosome
q0005515molecular_functionprotein binding
q0005634cellular_componentnucleus
q0005654cellular_componentnucleoplasm
q0005737cellular_componentcytoplasm
q0015030cellular_componentCajal body
q0031386molecular_functionprotein tag activity
q0036211biological_processprotein modification process
q1903955biological_processpositive regulation of protein targeting to mitochondrion
Q0000398biological_processmRNA splicing, via spliceosome
Q0000785cellular_componentchromatin
Q0005515molecular_functionprotein binding
Q0005634cellular_componentnucleus
Q0005654cellular_componentnucleoplasm
Q0005681cellular_componentspliceosomal complex
Q0006397biological_processmRNA processing
Q0008380biological_processRNA splicing
Q0016922molecular_functionnuclear receptor binding
Q0030374molecular_functionnuclear receptor coactivator activity
Q0045893biological_processpositive regulation of DNA-templated transcription
Q0071007cellular_componentU2-type catalytic step 2 spliceosome
Q2000825biological_processpositive regulation of androgen receptor activity
r0000398biological_processmRNA splicing, via spliceosome
r0003723molecular_functionRNA binding
r0003924molecular_functionGTPase activity
r0005515molecular_functionprotein binding
r0005525molecular_functionGTP binding
r0005634cellular_componentnucleus
r0005654cellular_componentnucleoplasm
r0005681cellular_componentspliceosomal complex
r0005829cellular_componentcytosol
r0006397biological_processmRNA processing
r0008380biological_processRNA splicing
r0015030cellular_componentCajal body
r0016020cellular_componentmembrane
r0016607cellular_componentnuclear speck
r0030623molecular_functionU5 snRNA binding
r0042220biological_processresponse to cocaine
r0043231cellular_componentintracellular membrane-bounded organelle
r0046540cellular_componentU4/U6 x U5 tri-snRNP complex
r0071005cellular_componentU2-type precatalytic spliceosome
r0071007cellular_componentU2-type catalytic step 2 spliceosome
r0071013cellular_componentcatalytic step 2 spliceosome
r0071466biological_processcellular response to xenobiotic stimulus
R0000398biological_processmRNA splicing, via spliceosome
R0000974cellular_componentPrp19 complex
R0003723molecular_functionRNA binding
R0005515molecular_functionprotein binding
R0005634cellular_componentnucleus
R0005654cellular_componentnucleoplasm
R0005681cellular_componentspliceosomal complex
R0005739cellular_componentmitochondrion
R0006397biological_processmRNA processing
R0008380biological_processRNA splicing
R0016607cellular_componentnuclear speck
R0045292biological_processmRNA cis splicing, via spliceosome
R0071007cellular_componentU2-type catalytic step 2 spliceosome
R0071013cellular_componentcatalytic step 2 spliceosome
v0000122biological_processnegative regulation of transcription by RNA polymerase II
v0000398biological_processmRNA splicing, via spliceosome
v0003713molecular_functiontranscription coactivator activity
v0003714molecular_functiontranscription corepressor activity
v0003723molecular_functionRNA binding
v0005112molecular_functionNotch binding
v0005515molecular_functionprotein binding
v0005634cellular_componentnucleus
v0005654cellular_componentnucleoplasm
v0005681cellular_componentspliceosomal complex
v0006357biological_processregulation of transcription by RNA polymerase II
v0006397biological_processmRNA processing
v0008024cellular_componentcyclin/CDK positive transcription elongation factor complex
v0008380biological_processRNA splicing
v0016363cellular_componentnuclear matrix
v0016604cellular_componentnuclear body
v0016607cellular_componentnuclear speck
v0016922molecular_functionnuclear receptor binding
v0019899molecular_functionenzyme binding
v0030511biological_processpositive regulation of transforming growth factor beta receptor signaling pathway
v0042771biological_processintrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator
v0042809molecular_functionnuclear vitamin D receptor binding
v0042974molecular_functionnuclear retinoic acid receptor binding
v0043923biological_processpositive regulation by host of viral transcription
v0045892biological_processnegative regulation of DNA-templated transcription
v0045944biological_processpositive regulation of transcription by RNA polymerase II
v0046332molecular_functionSMAD binding
v0048026biological_processpositive regulation of mRNA splicing, via spliceosome
v0048384biological_processretinoic acid receptor signaling pathway
v0048385biological_processregulation of retinoic acid receptor signaling pathway
v0050681molecular_functionnuclear androgen receptor binding
v0050769biological_processpositive regulation of neurogenesis
v0070562biological_processregulation of vitamin D receptor signaling pathway
v0070564biological_processpositive regulation of vitamin D receptor signaling pathway
v0071007cellular_componentU2-type catalytic step 2 spliceosome
v0071013cellular_componentcatalytic step 2 spliceosome
v0071300biological_processcellular response to retinoic acid
Functional Information from PROSITE/UniProt
site_idPS00028
Number of Residues23
DetailsZINC_FINGER_C2H2_1 Zinc finger C2H2 type domain signature. Cnv..CdcvVkdsinfldHingkkH
ChainResidueDetails
NCYS82-HIS104

site_idPS00678
Number of Residues15
DetailsWD_REPEATS_1 Trp-Asp (WD) repeats signature. LLSCsmDcKIKLWEV
ChainResidueDetails
8LEU304-VAL318
GLEU303-VAL317
GILE345-LEU359

site_idPS00997
Number of Residues23
DetailsG10_1 G10 protein signature 1. LCClRCiqtrDtNfgtnCiCRVP
ChainResidueDetails
QLEU100-PRO122

site_idPS00998
Number of Residues10
DetailsG10_2 G10 protein signature 2. CtHCGCRGCS
ChainResidueDetails
QCYS134-SER143

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues24
DetailsZN_FING: Matrin-type
ChainResidueDetails
NTYR80-HIS104
ISER226
rASN258

site_idSWS_FT_FI2
Number of Residues1
DetailsMOD_RES: N-acetylalanine => ECO:0007744|PubMed:22814378
ChainResidueDetails
NALA2
vSER182
vSER190
vSER446
vSER479
vSER481

site_idSWS_FT_FI3
Number of Residues9
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:28112733
ChainResidueDetails
NLYS8
PSER102
NLYS36
NLYS39
NLYS55
NLYS61
NLYS70
NLYS102
NLYS123

site_idSWS_FT_FI4
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:25772364, ECO:0007744|PubMed:28112733
ChainResidueDetails
NLYS45
NLYS64
KSER432

site_idSWS_FT_FI5
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:20068231, ECO:0007744|PubMed:21406692
ChainResidueDetails
vSER234

site_idSWS_FT_FI6
Number of Residues12
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:28112733
ChainResidueDetails
vLYS23
vLYS416
vLYS441
vLYS452
vLYS115
vLYS122
vLYS141
vLYS158
vLYS258
vLYS286
vLYS339
vLYS344

site_idSWS_FT_FI7
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:25772364, ECO:0007744|PubMed:28112733
ChainResidueDetails
KSER132
vLYS509

site_idSWS_FT_FI8
Number of Residues1
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:25218447, ECO:0007744|PubMed:28112733
ChainResidueDetails
vLYS81

site_idSWS_FT_FI9
Number of Residues1
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:25772364
ChainResidueDetails
vLYS97
LTHR411

site_idSWS_FT_FI10
Number of Residues3
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:25218447, ECO:0007744|PubMed:25772364, ECO:0007744|PubMed:28112733
ChainResidueDetails
vLYS170
vLYS193
vLYS240
KLYS371
KLYS381
KLYS415
KLYS418

site_idSWS_FT_FI11
Number of Residues1
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:25755297, ECO:0007744|PubMed:28112733
ChainResidueDetails
KLYS249

site_idSWS_FT_FI12
Number of Residues2
DetailsMOD_RES: Phosphothreonine => ECO:0000269|PubMed:18583928, ECO:0007744|PubMed:18669648, ECO:0007744|PubMed:23186163
ChainResidueDetails
LTHR424
LTHR438

site_idSWS_FT_FI13
Number of Residues1
DetailsMOD_RES: Phosphothreonine => ECO:0007744|PubMed:18669648, ECO:0007744|PubMed:23186163
ChainResidueDetails
LTHR430

site_idSWS_FT_FI14
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:18669648
ChainResidueDetails
LSER437

site_idSWS_FT_FI15
Number of Residues3
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:28112733
ChainResidueDetails
LLYS135
LLYS487

site_idSWS_FT_FI16
Number of Residues1
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:25755297, ECO:0007744|PubMed:25772364, ECO:0007744|PubMed:28112733
ChainResidueDetails
LLYS219

224201

PDB entries from 2024-08-28

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