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6ZRP

Crystal structure of class D Beta-lactamase OXA-48 in complex with meropenem

Functional Information from GO Data
ChainGOidnamespacecontents
A0008658molecular_functionpenicillin binding
A0008800molecular_functionbeta-lactamase activity
A0017001biological_processantibiotic catabolic process
B0008658molecular_functionpenicillin binding
B0008800molecular_functionbeta-lactamase activity
B0017001biological_processantibiotic catabolic process
C0008658molecular_functionpenicillin binding
C0008800molecular_functionbeta-lactamase activity
C0017001biological_processantibiotic catabolic process
D0008658molecular_functionpenicillin binding
D0008800molecular_functionbeta-lactamase activity
D0017001biological_processantibiotic catabolic process
Functional Information from PDB Data
site_idAC1
Number of Residues13
Detailsbinding site for residue DWZ A 301
ChainResidue
AALA69
ATYR211
AARG250
AHOH407
AHOH409
ASER70
AKCX73
AILE102
ATHR104
ATYR117
AVAL120
ALEU158
AGLY210

site_idAC2
Number of Residues6
Detailsbinding site for residue EDO A 302
ChainResidue
ALEU81
ASER184
AARG186
ASER187
AHOH492
AHOH556

site_idAC3
Number of Residues4
Detailsbinding site for residue EDO A 303
ChainResidue
AASP229
AASP230
AHOH532
AHOH542

site_idAC4
Number of Residues5
Detailsbinding site for residue EDO A 304
ChainResidue
ATYR177
AGLU227
AVAL232
AHOH420
AHOH437

site_idAC5
Number of Residues2
Detailsbinding site for residue CL A 305
ChainResidue
AARG206
AHOH592

site_idAC6
Number of Residues18
Detailsbinding site for residue DWZ B 301
ChainResidue
BALA69
BSER70
BTHR104
BTYR117
BSER118
BVAL120
BGLY210
BTYR211
BLEU247
BARG250
BHOH424
BHOH436
BHOH489
BHOH503
BHOH510
BHOH529
BHOH542
BHOH619

site_idAC7
Number of Residues7
Detailsbinding site for residue EDO B 302
ChainResidue
BVAL120
BGLN124
BARG214
BHOH414
CASP159
CARG214
CEDO302

site_idAC8
Number of Residues3
Detailsbinding site for residue EDO B 303
ChainResidue
BSER136
BILE149
BGLY151

site_idAC9
Number of Residues7
Detailsbinding site for residue EDO B 304
ChainResidue
BLYS39
BSER40
BASP240
BMET241
BPRO242
BHOH451
BHOH464

site_idAD1
Number of Residues4
Detailsbinding site for residue EDO B 305
ChainResidue
BHIS109
BASN110
BHOH446
BHOH492

site_idAD2
Number of Residues5
Detailsbinding site for residue EDO B 306
ChainResidue
BLEU81
BSER184
BARG186
BSER187
BHOH586

site_idAD3
Number of Residues11
Detailsbinding site for residue EDO C 302
ChainResidue
BGLN124
BSER155
BLEU158
BASP159
BARG214
BEDO302
CSER155
CLEU158
CASP159
CARG214
CEDO304

site_idAD4
Number of Residues7
Detailsbinding site for residue EDO C 303
ChainResidue
CALA65
CPHE66
CPRO217
CHOH408
CHOH434
CHOH452
CHOH522

site_idAD5
Number of Residues7
Detailsbinding site for residue EDO C 304
ChainResidue
BASP159
BARG214
CGLN124
CARG214
CEDO302
CHOH423
CHOH519

site_idAD6
Number of Residues6
Detailsbinding site for residue EDO C 305
ChainResidue
CSER40
CMET239
CASP240
CPRO242
CHOH407
CHOH426

site_idAD7
Number of Residues5
Detailsbinding site for residue EDO C 306
ChainResidue
CTYR177
CGLU227
CVAL232
CHOH468
CHOH475

site_idAD8
Number of Residues6
Detailsbinding site for residue EDO D 302
ChainResidue
BASP148
BHOH413
DARG61
DPRO217
DASP240
DHOH428

site_idAD9
Number of Residues6
Detailsbinding site for residue EDO D 303
ChainResidue
DLEU81
DSER184
DARG186
DSER187
DHOH449
DHOH553

site_idAE1
Number of Residues5
Detailsbinding site for residue EDO D 304
ChainResidue
DHIS90
DILE112
DHOH423
DHOH457
DHOH506

site_idAE2
Number of Residues6
Detailsbinding site for residue EDO D 305
ChainResidue
DTYR177
DGLU227
DVAL232
DHOH427
DHOH436
DHOH462

site_idAE3
Number of Residues6
Detailsbinding site for residue EDO D 306
ChainResidue
DSER40
DASP240
DMET241
DPRO242
DHOH430
DHOH434

site_idAE4
Number of Residues3
Detailsbinding site for residue EDO D 307
ChainResidue
DHIS109
DASN110
DHOH566

site_idAE5
Number of Residues21
Detailsbinding site for Di-peptide GYJ C 301 and SER C 70
ChainResidue
CPRO68
CALA69
CTHR71
CPHE72
CLYS73
CTHR104
CTYR117
CSER118
CVAL120
CLYS208
CTHR209
CGLY210
CTYR211
CLEU247
CARG250
CHOH456
CHOH459
CHOH483
CHOH547
CHOH574
CHOH599

site_idAE6
Number of Residues22
Detailsbinding site for Di-peptide GYJ D 301 and SER D 70
ChainResidue
DPRO68
DALA69
DTHR71
DPHE72
DKCX73
DTHR104
DTRP105
DTYR117
DSER118
DVAL120
DLEU158
DLYS208
DTHR209
DGLY210
DTYR211
DARG250
DHOH426
DHOH437
DHOH587
DHOH595
DHOH612
DHOH717

Functional Information from PROSITE/UniProt
site_idPS00337
Number of Residues11
DetailsBETA_LACTAMASE_D Beta-lactamase class-D active site. PaSTFKIPnSL
ChainResidueDetails
APRO68-LEU78
BPRO68-LEU78

223532

PDB entries from 2024-08-07

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