Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

6ZKV

Deactive complex I, open4

Functional Information from GO Data

Chain	GOid	namespace	contents
1	0005743	cellular_component	mitochondrial inner membrane
1	0006120	biological_process	mitochondrial electron transport, NADH to ubiquinone
1	0008137	molecular_function	NADH dehydrogenase (ubiquinone) activity
1	0010181	molecular_function	FMN binding
1	0045271	cellular_component	respiratory chain complex I
1	0046872	molecular_function	metal ion binding
1	0051287	molecular_function	NAD binding
1	0051536	molecular_function	iron-sulfur cluster binding
1	0051539	molecular_function	4 iron, 4 sulfur cluster binding
1	1902600	biological_process	proton transmembrane transport
2	0003954	molecular_function	NADH dehydrogenase activity
2	0005743	cellular_component	mitochondrial inner membrane
2	0006120	biological_process	mitochondrial electron transport, NADH to ubiquinone
2	0008137	molecular_function	NADH dehydrogenase (ubiquinone) activity
2	0016491	molecular_function	oxidoreductase activity
2	0045271	cellular_component	respiratory chain complex I
2	0046872	molecular_function	metal ion binding
2	0051536	molecular_function	iron-sulfur cluster binding
2	0051537	molecular_function	2 iron, 2 sulfur cluster binding
2	1902600	biological_process	proton transmembrane transport
3	0008137	molecular_function	NADH dehydrogenase (ubiquinone) activity
3	0016020	cellular_component	membrane
3	0016491	molecular_function	oxidoreductase activity
3	0016651	molecular_function	oxidoreductase activity, acting on NAD(P)H
3	0042773	biological_process	ATP synthesis coupled electron transport
3	0051536	molecular_function	iron-sulfur cluster binding
4	0016651	molecular_function	oxidoreductase activity, acting on NAD(P)H
4	0048038	molecular_function	quinone binding
4	0051287	molecular_function	NAD binding
5	0005739	cellular_component	mitochondrion
5	0008137	molecular_function	NADH dehydrogenase (ubiquinone) activity
5	0016020	cellular_component	membrane
5	0016651	molecular_function	oxidoreductase activity, acting on NAD(P)H
5	1902600	biological_process	proton transmembrane transport
6	0008137	molecular_function	NADH dehydrogenase (ubiquinone) activity
6	0048038	molecular_function	quinone binding
6	0051536	molecular_function	iron-sulfur cluster binding
6	0051539	molecular_function	4 iron, 4 sulfur cluster binding
9	0016020	cellular_component	membrane
9	0016651	molecular_function	oxidoreductase activity, acting on NAD(P)H
9	0051539	molecular_function	4 iron, 4 sulfur cluster binding
A	0005743	cellular_component	mitochondrial inner membrane
A	0006120	biological_process	mitochondrial electron transport, NADH to ubiquinone
A	0008137	molecular_function	NADH dehydrogenase (ubiquinone) activity
A	0030964	cellular_component	NADH dehydrogenase complex
A	0045271	cellular_component	respiratory chain complex I
A	1902600	biological_process	proton transmembrane transport
H	0003954	molecular_function	NADH dehydrogenase activity
H	0005743	cellular_component	mitochondrial inner membrane
H	0006120	biological_process	mitochondrial electron transport, NADH to ubiquinone
H	0008137	molecular_function	NADH dehydrogenase (ubiquinone) activity
H	0009060	biological_process	aerobic respiration
H	0016020	cellular_component	membrane
H	0031966	cellular_component	mitochondrial membrane
H	0032981	biological_process	mitochondrial respiratory chain complex I assembly
H	0045271	cellular_component	respiratory chain complex I
H	1902600	biological_process	proton transmembrane transport
J	0005739	cellular_component	mitochondrion
J	0005743	cellular_component	mitochondrial inner membrane
J	0006120	biological_process	mitochondrial electron transport, NADH to ubiquinone
J	0008137	molecular_function	NADH dehydrogenase (ubiquinone) activity
J	0032981	biological_process	mitochondrial respiratory chain complex I assembly
J	0045271	cellular_component	respiratory chain complex I
J	1902600	biological_process	proton transmembrane transport
K	0005743	cellular_component	mitochondrial inner membrane
K	0008137	molecular_function	NADH dehydrogenase (ubiquinone) activity
K	0016651	molecular_function	oxidoreductase activity, acting on NAD(P)H
K	0030964	cellular_component	NADH dehydrogenase complex
K	0042773	biological_process	ATP synthesis coupled electron transport
K	0045271	cellular_component	respiratory chain complex I
K	1902600	biological_process	proton transmembrane transport
L	0003954	molecular_function	NADH dehydrogenase activity
L	0005743	cellular_component	mitochondrial inner membrane
L	0006120	biological_process	mitochondrial electron transport, NADH to ubiquinone
L	0008137	molecular_function	NADH dehydrogenase (ubiquinone) activity
L	0015990	biological_process	electron transport coupled proton transport
L	0032981	biological_process	mitochondrial respiratory chain complex I assembly
L	0042773	biological_process	ATP synthesis coupled electron transport
L	0045271	cellular_component	respiratory chain complex I
M	0003954	molecular_function	NADH dehydrogenase activity
M	0005743	cellular_component	mitochondrial inner membrane
M	0006120	biological_process	mitochondrial electron transport, NADH to ubiquinone
M	0008137	molecular_function	NADH dehydrogenase (ubiquinone) activity
M	0009060	biological_process	aerobic respiration
M	0015990	biological_process	electron transport coupled proton transport
M	0032981	biological_process	mitochondrial respiratory chain complex I assembly
M	0042773	biological_process	ATP synthesis coupled electron transport
M	0045271	cellular_component	respiratory chain complex I
M	0048039	molecular_function	ubiquinone binding
N	0005743	cellular_component	mitochondrial inner membrane
N	0006120	biological_process	mitochondrial electron transport, NADH to ubiquinone
N	0008137	molecular_function	NADH dehydrogenase (ubiquinone) activity
N	0032981	biological_process	mitochondrial respiratory chain complex I assembly
N	0045271	cellular_component	respiratory chain complex I
N	0072593	biological_process	reactive oxygen species metabolic process
N	1902600	biological_process	proton transmembrane transport
V	0005743	cellular_component	mitochondrial inner membrane
V	0006120	biological_process	mitochondrial electron transport, NADH to ubiquinone
V	0045271	cellular_component	respiratory chain complex I
X	0000035	molecular_function	acyl binding
X	0000036	molecular_function	acyl carrier activity
X	0005739	cellular_component	mitochondrion
X	0006629	biological_process	lipid metabolic process
X	0006631	biological_process	fatty acid metabolic process
X	0006633	biological_process	fatty acid biosynthetic process
X	0031966	cellular_component	mitochondrial membrane
X	0045271	cellular_component	respiratory chain complex I
Y	0006120	biological_process	mitochondrial electron transport, NADH to ubiquinone
a	0005739	cellular_component	mitochondrion
a	0045271	cellular_component	respiratory chain complex I
b	0006120	biological_process	mitochondrial electron transport, NADH to ubiquinone
c	0005743	cellular_component	mitochondrial inner membrane
c	0016020	cellular_component	membrane
c	0022900	biological_process	electron transport chain
f	0022904	biological_process	respiratory electron transport chain
g	0005743	cellular_component	mitochondrial inner membrane
g	0006979	biological_process	response to oxidative stress
g	0031966	cellular_component	mitochondrial membrane
g	0032981	biological_process	mitochondrial respiratory chain complex I assembly
g	0045271	cellular_component	respiratory chain complex I
h	0005743	cellular_component	mitochondrial inner membrane
h	0006120	biological_process	mitochondrial electron transport, NADH to ubiquinone
h	0042773	biological_process	ATP synthesis coupled electron transport
i	0016020	cellular_component	membrane
i	0045271	cellular_component	respiratory chain complex I
j	0000035	molecular_function	acyl binding
j	0000036	molecular_function	acyl carrier activity
j	0005739	cellular_component	mitochondrion
j	0006629	biological_process	lipid metabolic process
j	0006631	biological_process	fatty acid metabolic process
j	0006633	biological_process	fatty acid biosynthetic process
j	0031966	cellular_component	mitochondrial membrane
j	0045271	cellular_component	respiratory chain complex I
k	0006120	biological_process	mitochondrial electron transport, NADH to ubiquinone
m	0005743	cellular_component	mitochondrial inner membrane
m	0045271	cellular_component	respiratory chain complex I
n	0005739	cellular_component	mitochondrion
n	0022900	biological_process	electron transport chain
o	0005737	cellular_component	cytoplasm
o	0005743	cellular_component	mitochondrial inner membrane
o	0006120	biological_process	mitochondrial electron transport, NADH to ubiquinone
o	0032981	biological_process	mitochondrial respiratory chain complex I assembly
o	0045271	cellular_component	respiratory chain complex I
p	0005739	cellular_component	mitochondrion
p	0005743	cellular_component	mitochondrial inner membrane
r	0005743	cellular_component	mitochondrial inner membrane
r	0006120	biological_process	mitochondrial electron transport, NADH to ubiquinone
r	0042775	biological_process	mitochondrial ATP synthesis coupled electron transport
s	0005739	cellular_component	mitochondrion
t	0006120	biological_process	mitochondrial electron transport, NADH to ubiquinone
u	0005743	cellular_component	mitochondrial inner membrane
u	0045271	cellular_component	respiratory chain complex I
v	0005739	cellular_component	mitochondrion
v	0005743	cellular_component	mitochondrial inner membrane
v	0006120	biological_process	mitochondrial electron transport, NADH to ubiquinone
v	0045271	cellular_component	respiratory chain complex I
x	0005739	cellular_component	mitochondrion
x	0045271	cellular_component	respiratory chain complex I
y	0005739	cellular_component	mitochondrion

Functional Information from PDB Data

site_id	AC1
Number of Residues	12
Details	binding site for residue SF4 1 500

Chain	Residue
1	ILE185
1	ILE404
1	CYS405
1	LEU407
1	PRO203
1	SER358
1	CYS359
1	GLY360
1	GLN361
1	CYS362
1	CYS365
1	THR403

site_id	AC2
Number of Residues	18
Details	binding site for residue FMN 1 501

Chain	Residue
1	GLY67
1	ARG68
1	GLY69
1	LYS78
1	ASN96
1	ASP98
1	GLU99
1	GLY100
1	TYR184
1	GLY187
1	GLU188
1	GLU189
1	VAL222
1	ALA223
1	ASN224
1	THR227
1	ALA406
1	LEU407

site_id	AC3
Number of Residues	9
Details	binding site for residue FES 2 300

Chain	Residue
2	CYS103
2	THR105
2	PRO107
2	CYS108
2	CYS144
2	LEU145
2	GLY146
2	ALA147
2	CYS148

site_id	AC4
Number of Residues	9
Details	binding site for residue SF4 3 801

Chain	Residue
3	HIS101
3	ASP104
3	CYS105
3	CYS108
3	GLY111
3	CYS114
3	GLN117
3	VAL205
3	GLY206

site_id	AC5
Number of Residues	9
Details	binding site for residue SF4 3 802

Chain	Residue
3	MET150
3	CYS153
3	ILE154
3	CYS156
3	THR157
3	CYS159
3	CYS203
3	VAL205
3	ALA207

site_id	AC6
Number of Residues	8
Details	binding site for residue FES 3 803

Chain	Residue
3	ARG39
3	CYS41
3	TYR42
3	GLY50
3	CYS52
3	ARG53
3	CYS55
3	CYS69

site_id	AC7
Number of Residues	5
Details	binding site for residue K 3 804

Chain	Residue
3	GLN110
3	ILE200
3	CYS203
3	VAL205
3	LEU208

site_id	AC8
Number of Residues	12
Details	binding site for residue SF4 6 201

Chain	Residue
4	2MR85
4	ARG105
4	HIS190
6	ALA53
6	CYS54
6	CYS55
6	GLY90
6	GLY117
6	SER118
6	CYS119
6	CYS149
6	PRO150

site_id	AC9
Number of Residues	11
Details	binding site for residue PC1 6 202

Chain	Residue
6	ARG172
6	LEU173
6	TRP176
6	ARG179
A	LEU27
A	ASN28
A	VAL29
A	TYR30
H	ILE53
H	PHE56
d	ASP55

site_id	AD1
Number of Residues	7
Details	binding site for residue 3PE 6 203

Chain	Residue
i	3PE201
6	ASP35
6	TRP39
6	ARG42
6	LYS168
H	ILE49
i	TRP75

site_id	AD2
Number of Residues	17
Details	binding site for residue PC1 9 401

Chain	Residue
4	ARG233
9	THR24
9	LEU25
9	TRP27
9	LEU30
H	TRP179
H	PRO180
H	PHE186
H	ILE187
H	TYR277
H	PHE280
H	HIS287
H	LEU288
H	ASN292
H	LEU296
m	LYS14
m	GLU15

site_id	AD3
Number of Residues	10
Details	binding site for residue SF4 9 402

Chain	Residue
9	HIS65
9	CYS87
9	ILE92
9	CYS116
9	ILE117
9	TYR118
9	CYS119
9	GLY120
9	CYS122
9	GLU133

site_id	AD4
Number of Residues	9
Details	binding site for residue SF4 9 403

Chain	Residue
9	CYS77
9	ILE78
9	CYS80
9	LYS81
9	CYS83
9	TYR109
9	CYS126
9	VAL128
9	ILE131

site_id	AD5
Number of Residues	5
Details	binding site for residue PC1 A 201

Chain	Residue
A	ASN83
A	THR86
J	TYR149
J	THR151
J	TRP152

site_id	AD6
Number of Residues	6
Details	binding site for residue 3PE A 202

Chain	Residue
A	PHE96
A	TRP106
H	PRO295
m	GLU15
m	LEU18
m	PHE22

site_id	AD7
Number of Residues	14
Details	binding site for residue 3PE H 401

Chain	Residue
A	LEU3
A	LEU7
A	PHE11
H	MET98
H	ASN99
H	PHE104
J	ILE34
J	LEU45
J	ASN46
J	SER50
J	PHE57
q	PHE139
q	ILE140
z	ALA39

site_id	AD8
Number of Residues	13
Details	binding site for residue 3PE L 1001

Chain	Residue
L	ASP163
L	THR166
L	GLN170
L	TYR174
L	ILE180
L	TYR529
L	MET533
L	HIS534
L	PRO538
v	ARG86
v	ASN87
v	ARG88
v	VAL89

site_id	AD9
Number of Residues	14
Details	binding site for residue PC1 L 1002

Chain	Residue
L	TRP66
L	HIS67
L	TRP68
L	SER77
L	ASN136
L	PHE138
L	ILE142
L	CDL1003
W	CDL201
r	TYR84
r	HIS88
r	LYS92
w	GLU87
w	PC1801

site_id	AE1
Number of Residues	20
Details	binding site for residue CDL L 1003

Chain	Residue
L	ILE22
L	ASN23
L	GLN116
L	LYS119
L	TYR120
L	MET150
L	PC11002
M	PRO353
M	ALA357
M	TRP358
M	LEU360
M	LEU361
M	LEU364
M	LEU369
M	PRO371
M	SER372
M	SER448
W	LEU22
W	CDL201
w	PC1801

site_id	AE2
Number of Residues	5
Details	binding site for residue 3PE L 1004

Chain	Residue
L	MET383
L	ILE495
L	PHE498
L	ILE499
n	VAL63

site_id	AE3
Number of Residues	6
Details	binding site for residue PC1 M 501

Chain	Residue
M	TYR166
M	MET195
N	ILE276
N	ILE277
V	GLU130
V	TRP132

site_id	AE4
Number of Residues	19
Details	binding site for residue CDL M 502

Chain	Residue
M	TRP16
M	ARG91
M	LEU94
M	ARG135
N	PRO238
N	ILE242
N	LEU257
N	MET335
k	PHE293
k	GLN294
k	TYR304
o	ALA32
o	GLY35
o	TYR39
o	CYS40
o	LEU43
o	ILE44
o	VAL53
o	LEU54

site_id	AE5
Number of Residues	9
Details	binding site for residue 3PE N 401

Chain	Residue
N	LYS46
N	ILE129
N	THR132
N	TRP133
N	SER213
N	MET220
N	ARG322
N	THR324
N	MET329

site_id	AE6
Number of Residues	6
Details	binding site for residue 3PE N 402

Chain	Residue
N	TYR143
N	ILE345
o	GLN6
o	LEU11
o	PHE13
o	ARG78

site_id	AE7
Number of Residues	12
Details	binding site for residue CDL N 403

Chain	Residue
N	MET323
N	THR324
N	LEU325
o	ASP45
o	ARG60
o	LEU63
o	TYR64
o	SER67
o	PHE68
x	LYS16
x	THR20
x	THR23

site_id	AE8
Number of Residues	17
Details	binding site for residue CDL W 201

Chain	Residue
L	LEU12
L	THR16
L	ASN65
L	PC11002
L	CDL1003
W	VAL37
W	ILE40
W	ASN44
W	GLU49
Z	ARG48
Z	ILE51
r	TRP79
r	TYR83
r	HIS88
w	ALA78
w	TYR79
w	PC1801

site_id	AE9
Number of Residues	8
Details	binding site for residue ZMP X 101

Chain	Residue
X	ASP43
X	SER44
t	HIS11
t	GLN12
t	PHE47
t	HIS50
t	LYS51
t	ALA66

site_id	AF1
Number of Residues	23
Details	binding site for residue CDL Y 201

Chain	Residue
M	LEU2
M	ILE5
M	MET9
M	MET10
M	SER53
M	THR55
M	PHE56
M	PHE105
M	PHE117
M	ILE120
M	MET121
N	PRO338
Y	PHE168
Y	TRP169
Y	THR170
Y	MET171
o	THR27
o	PRO29
o	TYR33
o	PHE36
y	PHE22
y	ASN30
y	LYS33

site_id	AF2
Number of Residues	4
Details	binding site for residue ZN b 300

Chain	Residue
b	CYS59
b	HIS68
b	CYS84
b	CYS87

site_id	AF3
Number of Residues	22
Details	binding site for residue NDP d 401

Chain	Residue
6	ARG179
d	GLY25
d	THR27
d	GLY28
d	PHE29
d	LEU30
d	ARG50
d	TRP73
d	LEU94
d	VAL95
d	GLY96
d	ARG97
d	PHE104
d	VAL109
d	ILE132
d	SER133
d	HIS134
d	TYR145
d	LYS149
d	PRO168
d	ILE171
d	ARG177

site_id	AF4
Number of Residues	10
Details	binding site for residue ZMP g 201

Chain	Residue
g	LYS28
g	TRP38
g	VAL62
g	MET65
g	PHE66
g	ASN69
g	ALA70
g	VAL72
g	VAL78
j	SER44

site_id	AF5
Number of Residues	11
Details	binding site for residue CDL h 201

Chain	Residue
H	TYR43
h	SER2
h	THR4
h	ILE7
i	LEU3
i	VAL6
i	ARG9
i	GLN13
z	TRP2
z	PHE3
z	LEU6

site_id	AF6
Number of Residues	5
Details	binding site for residue 3PE i 201

Chain	Residue
6	3PE203
H	PHE19
H	LEU46
i	PHE28
i	TRP75

site_id	AF7
Number of Residues	12
Details	binding site for residue AMP k 501

Chain	Residue
k	ILE31
k	SEP36
k	GLU53
k	LEU79
k	PHE82
k	TYR83
k	GLN97
k	LEU100
k	ARG104
k	ARG126
k	PHE134
k	TYR198

site_id	AF8
Number of Residues	5
Details	binding site for residue MYR s 201

Chain	Residue
L	TYR485
L	THR489
s	GLY1
s	ALA2
v	THR124

site_id	AF9
Number of Residues	14
Details	binding site for residue PC1 w 801

Chain	Residue
L	TRP66
L	LEU123
L	PC11002
L	CDL1003
M	PRO64
M	LEU68
M	TRP71
M	LEU446
W	CDL201
w	VAL69
w	SER74
w	VAL77
w	ALA78
w	TYR79

Functional Information from PROSITE/UniProt

site_id	PS00012
Number of Residues	16
Details	PHOSPHOPANTETHEINE Phosphopantetheine attachment site. DLGLDSLDQVEIIMAM

Chain	Residue	Details
j	ASP39-MET54

site_id	PS00018
Number of Residues	13
Details	EF_HAND_1 EF-hand calcium-binding domain. DIDAEKLMCpqEI

Chain	Residue	Details
j	ASP64-ILE76

site_id	PS00198
Number of Residues	12
Details	4FE4S_FER_1 4Fe-4S ferredoxin-type iron-sulfur binding region signature. CiACKlCEaVCP

Chain	Residue	Details
9	CYS77-PRO88
9	CYS116-PRO127

site_id	PS00535
Number of Residues	12
Details	COMPLEX1_49K Respiratory chain NADH dehydrogenase 49 Kd subunit signature. LHRGtEKLiEyK

Chain	Residue	Details
4	LEU83-LYS94

site_id	PS00542
Number of Residues	22
Details	COMPLEX1_30K Respiratory chain NADH dehydrogenase 30 Kd subunit signature. EREiwDMFgvffanHpdlRrIL

Chain	Residue	Details
5	GLU131-LEU152

site_id	PS00641
Number of Residues	18
Details	COMPLEX1_75K_1 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1. PrfCYherlsvaGnCRmC

Chain	Residue	Details
3	PRO38-CYS55

site_id	PS00642
Number of Residues	13
Details	COMPLEX1_75K_2 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 2. CPiCDqGGeCdLQ

Chain	Residue	Details
3	CYS105-GLN117

site_id	PS00643
Number of Residues	11
Details	COMPLEX1_75K_3 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 3. RCIqCtRCIrF

Chain	Residue	Details
3	ARG152-PHE162

site_id	PS00644
Number of Residues	16
Details	COMPLEX1_51K_1 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 1. GAGAYICGEETALIES

Chain	Residue	Details
1	GLY180-SER195

site_id	PS00645
Number of Residues	12
Details	COMPLEX1_51K_2 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. ESCGqCtPCReG

Chain	Residue	Details
1	GLU357-GLY368

site_id	PS00667
Number of Residues	16
Details	COMPLEX1_ND1_1 Respiratory-chain NADH dehydrogenase subunit 1 signature 1. GLLQpIaDAIKLFiKE

Chain	Residue	Details
H	GLY44-GLU59

site_id	PS00668
Number of Residues	14
Details	COMPLEX1_ND1_2 Respiratory-chain NADH dehydrogenase subunit 1 signature 2. PFDLTEGEseLVs.G

Chain	Residue	Details
H	PRO197-GLY210

site_id	PS01099
Number of Residues	19
Details	COMPLEX1_24K Respiratory-chain NADH dehydrogenase 24 Kd subunit signature. DklFTlieveCLGaCvnAP

Chain	Residue	Details
2	ASP134-PRO152

site_id	PS01150
Number of Residues	17
Details	COMPLEX1_20K Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. GcDRIVPVDIYvPgCPP

Chain	Residue	Details
6	GLY135-PRO151

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI5
Number of Residues	1102
Details	Transmembrane: {"description":"Helical","evidences":[{"evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)