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6ZDA

Crystal structure of YTHDC1 M438A mutant complex with m6A

Functional Information from GO Data
ChainGOidnamespacecontents
A0003723molecular_functionRNA binding
B0003723molecular_functionRNA binding
Functional Information from PDB Data
site_idAC1
Number of Residues14
Detailsbinding site for residue 6MD A 601
ChainResidue
ALYS361
AASP476
AHOH709
AHOH721
AHOH784
AHOH825
ASER362
AASN363
AASN367
ATRP377
ASER378
AARG404
ATRP428
AMET434

site_idAC2
Number of Residues9
Detailsbinding site for residue SO4 A 602
ChainResidue
AGLY344
ATHR345
ASER346
ALYS347
AHOH705
AHOH792
BLYS386
BGLY477
BGLU479

site_idAC3
Number of Residues4
Detailsbinding site for residue SO4 A 603
ChainResidue
AASN363
APRO431
AALA432
AHOH702

site_idAC4
Number of Residues15
Detailsbinding site for residue 6MD B 601
ChainResidue
BLYS361
BSER362
BASN363
BASN367
BTRP377
BSER378
BLEU380
BARG404
BTRP428
BMET434
BASP476
BHOH701
BHOH713
BHOH799
BHOH815

site_idAC5
Number of Residues8
Detailsbinding site for residue SO4 B 602
ChainResidue
BARG451
BGLU452
BHOH724
BHOH733
BHOH743
BHOH770
BHOH775
BHOH791

site_idAC6
Number of Residues6
Detailsbinding site for residue SO4 B 603
ChainResidue
BGLY344
BLYS347
BHOH705
BHOH734
BHOH748
BHOH836

site_idAC7
Number of Residues4
Detailsbinding site for residue SO4 B 604
ChainResidue
BSER419
BHIS421
BARG451
BHOH744

site_idAC8
Number of Residues4
Detailsbinding site for residue SO4 B 605
ChainResidue
BASN388
BARG392
BLYS457
BHOH706

site_idAC9
Number of Residues4
Detailsbinding site for residue SO4 B 606
ChainResidue
BASN363
BPRO431
BALA432
BHOH808

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PDB entries from 2025-12-17

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