6ZD9
Crystal structure of YTHDC1 apo purified using GST tag
Functional Information from GO Data
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 6 |
| Details | binding site for residue SO4 A 602 |
| Chain | Residue |
| A | GLY344 |
| A | SER346 |
| A | LYS347 |
| A | HOH712 |
| B | LYS386 |
| B | GLU479 |
| site_id | AC2 |
| Number of Residues | 2 |
| Details | binding site for residue SO4 A 603 |
| Chain | Residue |
| A | HIS420 |
| A | HIS421 |
| site_id | AC3 |
| Number of Residues | 8 |
| Details | binding site for residue PEG B 601 |
| Chain | Residue |
| B | LYS385 |
| B | ASN388 |
| B | ARG392 |
| B | LYS457 |
| B | HOH706 |
| B | HOH759 |
| B | HOH800 |
| B | GLU384 |
| site_id | AC4 |
| Number of Residues | 6 |
| Details | binding site for residue PEG B 602 |
| Chain | Residue |
| B | HIS420 |
| B | HIS421 |
| B | ARG451 |
| B | PRO494 |
| B | HOH863 |
| B | HOH895 |
| site_id | AC5 |
| Number of Residues | 8 |
| Details | binding site for residue SO4 B 604 |
| Chain | Residue |
| B | ARG451 |
| B | GLU452 |
| B | HOH722 |
| B | HOH739 |
| B | HOH745 |
| B | HOH751 |
| B | HOH774 |
| B | HOH810 |
| site_id | AC6 |
| Number of Residues | 5 |
| Details | binding site for residue SO4 B 605 |
| Chain | Residue |
| B | GLY344 |
| B | LYS347 |
| B | HOH703 |
| B | HOH704 |
| B | HOH813 |
| site_id | AC7 |
| Number of Residues | 7 |
| Details | binding site for residue SO4 B 606 |
| Chain | Residue |
| B | ASN363 |
| B | ARG404 |
| B | MET434 |
| B | SER435 |
| B | ALA436 |
| B | HOH834 |
| B | HOH845 |
| site_id | AC8 |
| Number of Residues | 7 |
| Details | binding site for residue PEG B 607 |
| Chain | Residue |
| B | GLU405 |
| B | SER406 |
| B | GLY407 |
| B | PHE455 |
| B | HOH753 |
| B | HOH763 |
| B | HOH866 |
| site_id | AC9 |
| Number of Residues | 32 |
| Details | binding site for Di-peptide PEG A 601 and LYS B 361 |
| Chain | Residue |
| A | LEU359 |
| A | ILE360 |
| A | SER362 |
| A | SER402 |
| A | ARG404 |
| A | PRO425 |
| A | LYS472 |
| A | GLY474 |
| A | ASP476 |
| A | HOH765 |
| A | HOH789 |
| B | ILE360 |
| B | SER362 |
| B | GLU384 |
| B | LYS385 |
| B | ASN388 |
| B | ARG392 |
| B | SER402 |
| B | ARG404 |
| B | ARG404 |
| B | LYS457 |
| B | GLY474 |
| B | GLY474 |
| B | ARG475 |
| B | ASP476 |
| B | ASP476 |
| B | HOH702 |
| B | HOH706 |
| B | HOH734 |
| B | HOH740 |
| B | HOH759 |
| B | HOH800 |
| site_id | AD1 |
| Number of Residues | 13 |
| Details | binding site for Di-peptide PEG B 603 and TRP B 428 |
| Chain | Residue |
| B | TYR350 |
| B | GLN353 |
| B | ASN367 |
| B | ILE426 |
| B | HIS427 |
| B | HIS427 |
| B | VAL429 |
| B | VAL429 |
| B | LEU430 |
| B | MET438 |
| B | HOH707 |
| B | HOH746 |
| B | HOH796 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 274 |
| Details | Domain: {"description":"YTH","evidences":[{"source":"PROSITE-ProRule","id":"PRU00225","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 6 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"31670957","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"6RT4","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6RT5","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6RT6","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6RT7","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 2 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"25242552","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"31670957","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"6RT4","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6RT5","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6RT6","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6RT7","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 2 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"25242552","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI5 |
| Number of Residues | 2 |
| Details | Modified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"18669648","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"20068231","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"23186163","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI6 |
| Number of Residues | 2 |
| Details | Modified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"20068231","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
