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6ZCM

Crystal structure of YTHDC1 with compound DHU_DC1_180

Functional Information from GO Data
ChainGOidnamespacecontents
A0003723molecular_functionRNA binding
B0003723molecular_functionRNA binding
Functional Information from PDB Data
site_idAC1
Number of Residues13
Detailsbinding site for residue QF2 A 601
ChainResidue
ALYS361
APRO431
AMET434
AASP476
AHOH701
AASN363
AASN367
ATRP377
ASER378
ATHR379
ALEU380
AARG404
ATRP428

site_idAC2
Number of Residues9
Detailsbinding site for residue SO4 A 602
ChainResidue
AGLY344
ATHR345
ASER346
ALYS347
AHOH702
AHOH717
AHOH771
BLYS386
BGLU479

site_idAC3
Number of Residues3
Detailsbinding site for residue SO4 A 603
ChainResidue
AHIS420
AHIS421
AHOH705

site_idAC4
Number of Residues3
Detailsbinding site for residue SO4 A 604
ChainResidue
AARG451
APRO494
AHOH715

site_idAC5
Number of Residues14
Detailsbinding site for residue QF2 B 601
ChainResidue
BLYS361
BASN363
BTRP377
BSER378
BTHR379
BLEU380
BARG404
BTRP428
BLEU430
BPRO431
BMET434
BASP476
BHOH775
BHOH783

site_idAC6
Number of Residues7
Detailsbinding site for residue SO4 B 602
ChainResidue
BARG451
BGLU452
BHOH737
BHOH766
BHOH767
BHOH802
BHOH835

site_idAC7
Number of Residues6
Detailsbinding site for residue SO4 B 603
ChainResidue
BLYS347
BHOH749
BHOH764
BHOH793
BHOH818
BHOH838

site_idAC8
Number of Residues7
Detailsbinding site for residue SO4 B 604
ChainResidue
BLYS361
BARG404
BARG475
BASP476
BHOH719
BHOH746
BHOH775

site_idAC9
Number of Residues4
Detailsbinding site for residue SO4 B 605
ChainResidue
BSER419
BHIS420
BHIS421
BARG451

site_idAD1
Number of Residues7
Detailsbinding site for residue SO4 B 606
ChainResidue
BLYS385
BASN388
BARG392
BLYS457
BHOH709
BHOH717
BHOH863

site_idAD2
Number of Residues3
Detailsbinding site for residue SO4 B 607
ChainResidue
BASN364
BHIS365
BHOH704

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:31670957, ECO:0007744|PDB:6RT4, ECO:0007744|PDB:6RT5, ECO:0007744|PDB:6RT6, ECO:0007744|PDB:6RT7
ChainResidueDetails
BLYS361
BASP476
ALYS361
AASP476

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:25242552, ECO:0000269|PubMed:31670957, ECO:0007744|PDB:6RT4, ECO:0007744|PDB:6RT5, ECO:0007744|PDB:6RT6, ECO:0007744|PDB:6RT7
ChainResidueDetails
ATRP377
BTRP377

site_idSWS_FT_FI3
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:25242552
ChainResidueDetails
ATRP428
BTRP428

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:18669648, ECO:0007744|PubMed:20068231, ECO:0007744|PubMed:23186163
ChainResidueDetails
ASER424
BSER424

site_idSWS_FT_FI5
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:20068231
ChainResidueDetails
ASER435
BSER435

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PDB entries from 2024-05-29

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