6ZCA

Structure of the B. subtilis RNA POLYMERASE in complex with HelD (monomer)

Functional Information from GO Data

Chain	GOid	namespace	contents
D	0006351	biological_process	DNA-templated transcription
D	0006355	biological_process	regulation of DNA-templated transcription
E	0003677	molecular_function	DNA binding
E	0003899	molecular_function	DNA-directed RNA polymerase activity
E	0006351	biological_process	DNA-templated transcription
E	0009295	cellular_component	nucleoid
E	0034062	molecular_function	5'-3' RNA polymerase activity
H	0000725	biological_process	recombinational repair
H	0003677	molecular_function	DNA binding
H	0003678	molecular_function	DNA helicase activity
H	0003711	molecular_function	transcription elongation factor activity
H	0005524	molecular_function	ATP binding
H	0005737	cellular_component	cytoplasm
H	0005829	cellular_component	cytosol
H	0043138	molecular_function	3'-5' DNA helicase activity
H	0043139	molecular_function	5'-3' DNA helicase activity
U	0003677	molecular_function	DNA binding
U	0003899	molecular_function	DNA-directed RNA polymerase activity
U	0005515	molecular_function	protein binding
U	0005737	cellular_component	cytoplasm
U	0006351	biological_process	DNA-templated transcription
U	0034062	molecular_function	5'-3' RNA polymerase activity
U	0046983	molecular_function	protein dimerization activity
V	0003677	molecular_function	DNA binding
V	0003899	molecular_function	DNA-directed RNA polymerase activity
V	0005515	molecular_function	protein binding
V	0005737	cellular_component	cytoplasm
V	0006351	biological_process	DNA-templated transcription
V	0034062	molecular_function	5'-3' RNA polymerase activity
V	0046983	molecular_function	protein dimerization activity
X	0000345	cellular_component	cytosolic DNA-directed RNA polymerase complex
X	0003677	molecular_function	DNA binding
X	0003899	molecular_function	DNA-directed RNA polymerase activity
X	0006351	biological_process	DNA-templated transcription
X	0006352	biological_process	DNA-templated transcription initiation
X	0006354	biological_process	DNA-templated transcription elongation
X	0032549	molecular_function	ribonucleoside binding
X	0034062	molecular_function	5'-3' RNA polymerase activity
Y	0000287	molecular_function	magnesium ion binding
Y	0003677	molecular_function	DNA binding
Y	0003899	molecular_function	DNA-directed RNA polymerase activity
Y	0005515	molecular_function	protein binding
Y	0005829	cellular_component	cytosol
Y	0006351	biological_process	DNA-templated transcription
Y	0008270	molecular_function	zinc ion binding
Y	0034062	molecular_function	5'-3' RNA polymerase activity

Functional Information from PROSITE/UniProt

site_id	PS01166
Number of Residues	13
Details	RNA_POL_BETA RNA polymerases beta chain signature. GdKMAGrHGNKGV

Chain	Residue	Details
X	GLY922-VAL934

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	67
Details	Domain: {"description":"HTH HARE-type","evidences":[{"source":"PROSITE-ProRule","id":"PRU01261","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI5
Number of Residues	4
Details	Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_01322","evidenceCode":"ECO:0000255"},{"source":"PDB","id":"6WVJ","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6WVK","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI6
Number of Residues	3
Details	Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_01322","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"33339820","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"6WVJ","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6WVK","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI7
Number of Residues	4
Details	Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_01322","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"33339827","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"6WVJ","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6WVK","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6ZCA","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6ZFB","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI8
Number of Residues	398
Details	Domain: {"description":"UvrD-like helicase ATP-binding","evidences":[{"source":"PROSITE-ProRule","id":"PRU00560","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI9
Number of Residues	79
Details	Coiled coil: {"evidences":[{"source":"PubMed","id":"33339827","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"6ZCA","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6ZFB","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI10
Number of Residues	7
Details	Binding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00560","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---