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6ZA1

Structure of [NiFeSe] hydrogenase G491A variant from Desulfovibrio vulgaris Hildenborough pressurized with Oxygen gas - structure G491A-O2-hd

Functional Information from GO Data
ChainGOidnamespacecontents
A0008901molecular_functionferredoxin hydrogenase activity
A0009375cellular_componentferredoxin hydrogenase complex
A0051536molecular_functioniron-sulfur cluster binding
B0005515molecular_functionprotein binding
B0008901molecular_functionferredoxin hydrogenase activity
B0016151molecular_functionnickel cation binding
B0016491molecular_functionoxidoreductase activity
B0042597cellular_componentperiplasmic space
B0046872molecular_functionmetal ion binding
B0047806molecular_functioncytochrome-c3 hydrogenase activity
Functional Information from PDB Data
site_idAC1
Number of Residues8
Detailsbinding site for residue SF4 A 301
ChainResidue
AHIS208
ACYS211
ATYR213
ALEU214
ACYS232
AARG233
ACYS238
AVAL260

site_idAC2
Number of Residues9
Detailsbinding site for residue SF4 A 302
ChainResidue
ACYS247
ATRP252
ACYS259
ACYS265
AILE266
ACYS268
BARG182
BGLN187
ATHR243

site_idAC3
Number of Residues14
Detailsbinding site for residue SF4 A 303
ChainResidue
AGLY17
ACYS18
AGLY20
ACYS21
AGLU77
AGLY119
ATHR120
ACYS121
AGLY158
ACYS159
APRO160
A6ML304
BARG73
BHIS185

site_idAC4
Number of Residues15
Detailsbinding site for residue 6ML A 304
ChainResidue
ACYS18
ATHR19
AGLY20
ACYS21
AGLU77
AGLY78
AGLY119
ATHR120
ACYS121
AGLY158
ACYS159
APRO160
ASF4303
AHOH416
BHIS185

site_idAC5
Number of Residues8
Detailsbinding site for residue GOL A 305
ChainResidue
ATYR124
AGLY126
AALA130
AASP272
APHE273
APRO274
AASP275
AHOH427

site_idAC6
Number of Residues4
Detailsbinding site for residue OXY A 306
ChainResidue
AALA34
ALEU37
ALEU38
BILE163

site_idAC7
Number of Residues12
Detailsbinding site for residue FCO B 501
ChainResidue
BCYS78
BHIS82
BALA420
BPRO421
BARG422
BLEU425
BALA444
BSER445
BSEC489
BCYS492
BNI502
BH2S504

site_idAC8
Number of Residues7
Detailsbinding site for residue NI B 502
ChainResidue
BCSD75
BCYS75
BCYS78
BSEC489
BCYS492
BFCO501
BH2S504

site_idAC9
Number of Residues6
Detailsbinding site for residue FE2 B 503
ChainResidue
BGLU56
BILE441
BHIS495
BHOH604
BHOH606
BHOH616

site_idAD1
Number of Residues6
Detailsbinding site for residue H2S B 505
ChainResidue
BCYS78
BTHR80
BALA81
BPHE110
BASN113
BPRO421

site_idAD2
Number of Residues3
Detailsbinding site for residue OXY B 506
ChainResidue
BVAL131
BGLY133
BTYR162

site_idAD3
Number of Residues3
Detailsbinding site for residue OXY B 507
ChainResidue
BPHE236
BILE355
BALA367

site_idAD4
Number of Residues2
Detailsbinding site for residue OXY B 508
ChainResidue
ALEU37
BTYR162

site_idAD5
Number of Residues14
Detailsbinding site for residues H2S B 504 and SEC B 489
ChainResidue
BCYS75
BCYS78
BARG422
BSER445
BASP487
BPRO488
BLEU490
BALA491
BCYS492
BALA493
BFCO501
BNI502
BGLU28
BCSD75

Functional Information from PROSITE/UniProt
site_idPS00507
Number of Residues26
DetailsNI_HGENASE_L_1 Nickel-dependent hydrogenases large subunit signature 1. RGFEtilrgrdprdasqivQRiCGVC
ChainResidueDetails
BARG53-CYS78

site_idPS00508
Number of Residues10
DetailsNI_HGENASE_L_2 Nickel-dependent hydrogenases large subunit signature 2. FDPULACav.H
ChainResidueDetails
BPHE486-HIS495

246704

PDB entries from 2025-12-24

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