6Z74
Structure of the transcriptional repressor Atu1419 (VanR) in complex with a fortuitous citrate from agrobacterium fabrum
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0003677 | molecular_function | DNA binding |
A | 0003700 | molecular_function | DNA-binding transcription factor activity |
A | 0006355 | biological_process | regulation of DNA-templated transcription |
A | 0046872 | molecular_function | metal ion binding |
B | 0003677 | molecular_function | DNA binding |
B | 0003700 | molecular_function | DNA-binding transcription factor activity |
B | 0006355 | biological_process | regulation of DNA-templated transcription |
B | 0046872 | molecular_function | metal ion binding |
C | 0003677 | molecular_function | DNA binding |
C | 0003700 | molecular_function | DNA-binding transcription factor activity |
C | 0006355 | biological_process | regulation of DNA-templated transcription |
C | 0046872 | molecular_function | metal ion binding |
D | 0003677 | molecular_function | DNA binding |
D | 0003700 | molecular_function | DNA-binding transcription factor activity |
D | 0006355 | biological_process | regulation of DNA-templated transcription |
D | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 5 |
Details | binding site for residue ZN A 301 |
Chain | Residue |
A | ASN137 |
A | HIS141 |
A | HIS192 |
A | HIS214 |
A | CIT302 |
site_id | AC2 |
Number of Residues | 15 |
Details | binding site for residue CIT A 302 |
Chain | Residue |
A | PRO168 |
A | SER169 |
A | LYS175 |
A | PHE181 |
A | ARG183 |
A | ALA188 |
A | HIS192 |
A | HIS214 |
A | ALA218 |
A | ASN221 |
A | ZN301 |
A | ARG86 |
A | TYR133 |
A | ASN137 |
A | HIS141 |
site_id | AC3 |
Number of Residues | 7 |
Details | binding site for residue GOL A 303 |
Chain | Residue |
A | VAL125 |
A | PHE130 |
A | PHE181 |
A | SER184 |
A | LEU185 |
A | ARG186 |
A | HOH467 |
site_id | AC4 |
Number of Residues | 7 |
Details | binding site for residue EDO A 304 |
Chain | Residue |
A | ARG183 |
A | GLN191 |
A | GLU213 |
A | HOH437 |
D | GLU190 |
D | ALA194 |
D | VAL210 |
site_id | AC5 |
Number of Residues | 5 |
Details | binding site for residue EDO A 305 |
Chain | Residue |
A | ARG72 |
A | ARG73 |
A | ASP78 |
B | MET152 |
B | ARG155 |
site_id | AC6 |
Number of Residues | 5 |
Details | binding site for residue EDO A 306 |
Chain | Residue |
A | GLU19 |
A | LEU22 |
A | SER23 |
A | PRO237 |
A | EDO308 |
site_id | AC7 |
Number of Residues | 7 |
Details | binding site for residue EDO A 307 |
Chain | Residue |
A | ALA209 |
A | ARG212 |
A | HOH439 |
A | HOH462 |
B | EDO310 |
D | ALA205 |
D | HOH412 |
site_id | AC8 |
Number of Residues | 4 |
Details | binding site for residue EDO A 308 |
Chain | Residue |
A | LEU22 |
A | PRO164 |
A | PRO237 |
A | EDO306 |
site_id | AC9 |
Number of Residues | 5 |
Details | binding site for residue EDO A 309 |
Chain | Residue |
A | LYS193 |
A | ALA194 |
A | ARG206 |
A | HOH414 |
D | THR220 |
site_id | AD1 |
Number of Residues | 8 |
Details | binding site for residue EDO A 310 |
Chain | Residue |
A | ARG63 |
A | LEU64 |
A | GLY67 |
A | GLY68 |
A | EDO311 |
B | GLU50 |
B | ARG54 |
B | EDO306 |
site_id | AD2 |
Number of Residues | 8 |
Details | binding site for residue EDO A 311 |
Chain | Residue |
A | GLU34 |
A | GLY67 |
A | GLY68 |
A | PHE69 |
A | GLU231 |
A | EDO310 |
A | HOH450 |
B | HOH412 |
site_id | AD3 |
Number of Residues | 3 |
Details | binding site for residue EDO A 312 |
Chain | Residue |
A | ASP118 |
A | ARG186 |
A | GLU190 |
site_id | AD4 |
Number of Residues | 6 |
Details | binding site for residue EDO A 313 |
Chain | Residue |
A | GLU58 |
A | ARG72 |
A | ARG159 |
A | LEU163 |
A | HOH471 |
B | GLU156 |
site_id | AD5 |
Number of Residues | 5 |
Details | binding site for residue ZN B 301 |
Chain | Residue |
B | ASN137 |
B | HIS141 |
B | HIS192 |
B | HIS214 |
B | CIT302 |
site_id | AD6 |
Number of Residues | 16 |
Details | binding site for residue CIT B 302 |
Chain | Residue |
B | HIS214 |
B | SER215 |
B | THR217 |
B | ALA218 |
B | ASN221 |
B | ZN301 |
B | HOH438 |
B | ARG86 |
B | TYR133 |
B | ASN137 |
B | HIS141 |
B | PRO168 |
B | LEU172 |
B | LEU185 |
B | ALA188 |
B | HIS192 |
site_id | AD7 |
Number of Residues | 2 |
Details | binding site for residue SO4 B 303 |
Chain | Residue |
B | ARG138 |
B | HIS142 |
site_id | AD8 |
Number of Residues | 6 |
Details | binding site for residue EDO B 304 |
Chain | Residue |
B | LYS175 |
B | HOH450 |
D | ASN177 |
D | ILE178 |
D | GLY179 |
D | ARG182 |
site_id | AD9 |
Number of Residues | 2 |
Details | binding site for residue EDO B 305 |
Chain | Residue |
B | GLY179 |
B | ARG182 |
site_id | AE1 |
Number of Residues | 4 |
Details | binding site for residue EDO B 306 |
Chain | Residue |
A | PRO65 |
A | EDO310 |
B | THR8 |
B | GLU50 |
site_id | AE2 |
Number of Residues | 7 |
Details | binding site for residue EDO B 307 |
Chain | Residue |
B | ASP111 |
B | LYS193 |
B | VAL196 |
B | ALA197 |
B | VAL200 |
B | HOH416 |
B | HOH419 |
site_id | AE3 |
Number of Residues | 5 |
Details | binding site for residue EDO B 308 |
Chain | Residue |
A | GLU156 |
A | HOH442 |
B | VAL85 |
B | MET89 |
B | GLU156 |
site_id | AE4 |
Number of Residues | 6 |
Details | binding site for residue EDO B 309 |
Chain | Residue |
A | ASP78 |
A | ASP81 |
B | GLY149 |
B | SER150 |
B | GLU151 |
B | MET152 |
site_id | AE5 |
Number of Residues | 6 |
Details | binding site for residue EDO B 310 |
Chain | Residue |
A | EDO307 |
A | HOH423 |
B | ALA209 |
B | ARG212 |
B | HOH406 |
B | HOH429 |
site_id | AE6 |
Number of Residues | 4 |
Details | binding site for residue EDO B 311 |
Chain | Residue |
B | GLU58 |
B | ARG159 |
B | SER162 |
B | LEU163 |
site_id | AE7 |
Number of Residues | 4 |
Details | binding site for residue EDO B 312 |
Chain | Residue |
B | GLU57 |
B | ARG155 |
B | ARG159 |
B | HOH424 |
site_id | AE8 |
Number of Residues | 7 |
Details | binding site for residue EDO B 313 |
Chain | Residue |
B | GLU84 |
B | GLU213 |
B | ARG216 |
B | HOH420 |
B | HOH431 |
C | ARG206 |
C | HOH423 |
site_id | AE9 |
Number of Residues | 5 |
Details | binding site for residue ZN C 301 |
Chain | Residue |
C | ASN137 |
C | HIS141 |
C | HIS192 |
C | HIS214 |
C | CIT302 |
site_id | AF1 |
Number of Residues | 17 |
Details | binding site for residue CIT C 302 |
Chain | Residue |
C | ARG86 |
C | TYR133 |
C | ASN137 |
C | HIS141 |
C | PRO168 |
C | PHE171 |
C | LEU172 |
C | LEU185 |
C | ALA188 |
C | HIS192 |
C | HIS214 |
C | SER215 |
C | THR217 |
C | ALA218 |
C | ASN221 |
C | ZN301 |
C | HOH412 |
site_id | AF2 |
Number of Residues | 6 |
Details | binding site for residue PEG C 303 |
Chain | Residue |
B | VAL35 |
B | SER36 |
B | GLU39 |
B | HOH434 |
C | HIS142 |
C | GLN143 |
site_id | AF3 |
Number of Residues | 4 |
Details | binding site for residue EDO C 304 |
Chain | Residue |
C | ARG72 |
C | ARG73 |
C | ASP78 |
D | MET152 |
site_id | AF4 |
Number of Residues | 5 |
Details | binding site for residue EDO C 305 |
Chain | Residue |
C | ALA146 |
C | GLY149 |
C | SER150 |
C | GLU151 |
C | HOH427 |
site_id | AF5 |
Number of Residues | 6 |
Details | binding site for residue EDO C 306 |
Chain | Residue |
B | GLU203 |
B | ARG206 |
C | GLU84 |
C | ARG216 |
C | ARG219 |
C | HOH421 |
site_id | AF6 |
Number of Residues | 5 |
Details | binding site for residue ZN D 301 |
Chain | Residue |
D | ASN137 |
D | HIS141 |
D | HIS192 |
D | HIS214 |
D | CIT302 |
site_id | AF7 |
Number of Residues | 16 |
Details | binding site for residue CIT D 302 |
Chain | Residue |
D | ARG86 |
D | TYR133 |
D | ASN137 |
D | HIS141 |
D | PRO168 |
D | LEU172 |
D | LEU185 |
D | ALA188 |
D | HIS192 |
D | HIS214 |
D | SER215 |
D | THR217 |
D | ALA218 |
D | ASN221 |
D | ZN301 |
D | HOH423 |
site_id | AF8 |
Number of Residues | 2 |
Details | binding site for residue NA D 303 |
Chain | Residue |
A | CYS120 |
D | ARG31 |
site_id | AF9 |
Number of Residues | 3 |
Details | binding site for residue NA D 304 |
Chain | Residue |
A | GLN116 |
D | PHE33 |
D | GLU34 |