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6YRC

Spectroscopically-validated structure of DtpB from Streptomyces lividans in the ferric state

Functional Information from GO Data
ChainGOidnamespacecontents
A0004601molecular_functionperoxidase activity
A0020037molecular_functionheme binding
B0004601molecular_functionperoxidase activity
B0020037molecular_functionheme binding
C0004601molecular_functionperoxidase activity
C0020037molecular_functionheme binding
D0004601molecular_functionperoxidase activity
D0020037molecular_functionheme binding
E0004601molecular_functionperoxidase activity
E0020037molecular_functionheme binding
F0004601molecular_functionperoxidase activity
F0020037molecular_functionheme binding
Functional Information from PDB Data
site_idAC1
Number of Residues24
Detailsbinding site for residue HEM A 401
ChainResidue
AASP146
AHIS225
ATHR229
ASER230
AARG243
AASN245
ATHR258
APHE260
AMET273
ALEU274
AMET277
AVAL151
AILE289
AHOH557
AHOH583
AHOH595
AHOH622
AASP152
AGLY153
ATHR154
AGLU155
AGLN184
ATYR186
AARG207

site_idAC2
Number of Residues5
Detailsbinding site for residue 7PE A 402
ChainResidue
AGLU155
AASN156
AHOH518
AHOH641
FARG48

site_idAC3
Number of Residues6
Detailsbinding site for residue 7PE A 403
ChainResidue
AGLU171
AASP172
AARG265
AHOH507
AHOH521
AHOH574

site_idAC4
Number of Residues6
Detailsbinding site for residue MG A 404
ChainResidue
AASP191
AHOH502
AHOH616
DHOH552
DHOH569
DHOH631

site_idAC5
Number of Residues6
Detailsbinding site for residue MG A 405
ChainResidue
AHOH557
AHOH563
AHOH622
AHOH627
AHOH693
AHOH714

site_idAC6
Number of Residues5
Detailsbinding site for residue MG A 406
ChainResidue
AGLU144
AHOH508
AHOH565
AHOH649
AHOH688

site_idAC7
Number of Residues22
Detailsbinding site for residue HEM B 401
ChainResidue
BASP146
BVAL151
BASP152
BGLY153
BTHR154
BGLU155
BGLN184
BTYR186
BHIS188
BARG207
BHIS225
BVAL226
BTHR229
BSER230
BARG243
BASN245
BTHR258
BPHE260
BLEU274
BILE289
BHOH515
BHOH549

site_idAC8
Number of Residues5
Detailsbinding site for residue 7PE B 402
ChainResidue
BGLU199
BGLU202
BARG203
BARG208
BLEU215

site_idAC9
Number of Residues5
Detailsbinding site for residue GOL B 403
ChainResidue
BGLU194
BGLY195
BLEU196
FGLU33
FARG73

site_idAD1
Number of Residues6
Detailsbinding site for residue 7PE B 404
ChainResidue
BTYR141
BMET147
BILE190
BGLU194
BHOH532
ETHR120

site_idAD2
Number of Residues3
Detailsbinding site for residue GOL B 405
ChainResidue
BASP189
BASP191
FGLU69

site_idAD3
Number of Residues22
Detailsbinding site for residue HEM C 401
ChainResidue
CGLN184
CTYR186
CHIS188
CARG207
CHIS225
CVAL226
CTHR229
CSER230
CARG243
CASN245
CTHR258
CPHE260
CMET273
CLEU274
CHOH550
CHOH617
CASP146
CVAL151
CASP152
CGLY153
CTHR154
CGLU155

site_idAD4
Number of Residues3
Detailsbinding site for residue GOL C 402
ChainResidue
BGLU310
CGLU240
CHOH629

site_idAD5
Number of Residues4
Detailsbinding site for residue GOL C 403
ChainResidue
CGLU310
CHOH630
CHOH649
DGLU240

site_idAD6
Number of Residues5
Detailsbinding site for residue MG C 404
ChainResidue
CHOH564
CHOH569
CHOH679
DHOH546
DHOH570

site_idAD7
Number of Residues5
Detailsbinding site for residue GOL C 405
ChainResidue
CMET210
CTHR211
CHOH541
ELYS209
EHOH539

site_idAD8
Number of Residues22
Detailsbinding site for residue HEM D 401
ChainResidue
DASP146
DVAL151
DASP152
DGLY153
DTHR154
DGLU155
DGLN184
DTYR186
DHIS188
DARG207
DHIS225
DVAL226
DTHR229
DARG243
DASN245
DTHR258
DPHE260
DLEU274
DMET277
DILE289
DHOH528
DHOH578

site_idAD9
Number of Residues6
Detailsbinding site for residue 7PE D 402
ChainResidue
DGLY82
DGLU171
DARG265
DTHR266
DGLU268
DHOH521

site_idAE1
Number of Residues22
Detailsbinding site for residue HEM E 401
ChainResidue
EASP146
EVAL151
EASP152
EGLY153
ETHR154
EGLU155
EGLN184
ETYR186
EHIS188
EARG207
EHIS225
ETHR229
ESER230
EARG243
EASN245
ETHR258
EPHE260
ELEU274
EMET277
EILE289
EHOH569
EHOH583

site_idAE2
Number of Residues6
Detailsbinding site for residue MG E 402
ChainResidue
EGLU310
EHOH637
EHOH670
EHOH674
FHOH541
FHOH545

site_idAE3
Number of Residues25
Detailsbinding site for residue HEM F 401
ChainResidue
FASP146
FPHE150
FVAL151
FASP152
FGLY153
FTHR154
FGLU155
FGLN184
FTYR186
FHIS188
FARG207
FHIS225
FVAL226
FTHR229
FSER230
FARG243
FASN245
FTHR258
FPHE260
FMET273
FLEU274
FMET277
FILE289
FHOH562
FHOH604

site_idAE4
Number of Residues5
Detailsbinding site for residue 7PE F 402
ChainResidue
FASP217
FLYS220
FALA222
FALA227
FHOH503

site_idAE5
Number of Residues3
Detailsbinding site for residue GOL F 403
ChainResidue
FSER313
FALA314
FHOH526

site_idAE6
Number of Residues6
Detailsbinding site for residue GOL F 404
ChainResidue
FSER30
FGLY31
FARG208
FSER216
FVAL219
FHOH654

site_idAE7
Number of Residues6
Detailsbinding site for residue 7PE F 405
ChainResidue
FTHR99
FPRO100
FGLN133
FASP134
FTHR297
FHOH553

site_idAE8
Number of Residues4
Detailsbinding site for residue GOL F 406
ChainResidue
FTHR27
FILE28
FASP29
FTHR131

site_idAE9
Number of Residues6
Detailsbinding site for residue GOL F 407
ChainResidue
DARG53
FTYR141
FPHE142
FASP143
FHOH520
FHOH609

site_idAF1
Number of Residues3
Detailsbinding site for residue 7PE F 408
ChainResidue
DTHR120
FTYR141
FMET147

site_idAF2
Number of Residues3
Detailsbinding site for residue 7PE F 409
ChainResidue
FLYS185
FGLU255
FHOH637

site_idAF3
Number of Residues6
Detailsbinding site for residue 7PE F 410
ChainResidue
EARG48
FGLU155
FASN156
FPRO157
FHOH541
FHOH633

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PDB entries from 2024-07-24

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