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6YPD

Crystal structure of AmpC from E. coli with Cyclic Boronate 3 (CB3 / APC308)

Functional Information from GO Data
ChainGOidnamespacecontents
A0008800molecular_functionbeta-lactamase activity
A0016787molecular_functionhydrolase activity
A0017001biological_processantibiotic catabolic process
A0030288cellular_componentouter membrane-bounded periplasmic space
A0042597cellular_componentperiplasmic space
A0046677biological_processresponse to antibiotic
Functional Information from PDB Data
site_idAC1
Number of Residues15
Detailsbinding site for residue KL8 A 401
ChainResidue
ASER64
AGLY317
AALA318
AASN346
AHOH502
AHOH703
AHOH745
AGLN120
ATYR150
AASN152
AVAL211
ATYR221
AASN289
ALYS315
ATHR316

site_idAC2
Number of Residues1
Detailsbinding site for residue PEG A 402
ChainResidue
ALEU131

site_idAC3
Number of Residues6
Detailsbinding site for residue DMS A 403
ChainResidue
AASP281
AILE284
AASP351
AGLN355
AEDO404
AHOH802

site_idAC4
Number of Residues3
Detailsbinding site for residue EDO A 404
ChainResidue
ALYS246
AGLN250
ADMS403

site_idAC5
Number of Residues6
Detailsbinding site for residue PEG A 405
ChainResidue
ALYS24
ATYR40
ATHR42
ATHR55
AGLN56
AHOH538

site_idAC6
Number of Residues2
Detailsbinding site for residue EDO A 406
ChainResidue
AASN343
APRO345

site_idAC7
Number of Residues6
Detailsbinding site for residue CL A 407
ChainResidue
AHIS13
AHIS13
AHIS13
AZN408
AZN408
AZN408

site_idAC8
Number of Residues6
Detailsbinding site for residue ZN A 408
ChainResidue
AHIS13
AHIS13
AHIS13
ACL407
ACL407
ACL407

Functional Information from PROSITE/UniProt
site_idPS00336
Number of Residues8
DetailsBETA_LACTAMASE_C Beta-lactamase class-C active site. FELGSVSK
ChainResidueDetails
APHE60-LYS67

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: Acyl-ester intermediate => ECO:0000255|PROSITE-ProRule:PRU10102, ECO:0000269|PubMed:6795623
ChainResidueDetails
ASER64

site_idSWS_FT_FI2
Number of Residues1
DetailsACT_SITE: Proton acceptor
ChainResidueDetails
ATYR150

site_idSWS_FT_FI3
Number of Residues1
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
ALYS315

219869

PDB entries from 2024-05-15

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