Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

6YO0

Cryo-EM structure of Tetrahymena thermophila mitochondrial ATP synthase - F1/peripheral stalk

This is a non-PDB format compatible entry.

Functional Information from GO Data

Chain	GOid	namespace	contents
A1	0000166	molecular_function	nucleotide binding
A1	0005524	molecular_function	ATP binding
A1	0006754	biological_process	ATP biosynthetic process
A1	0006811	biological_process	monoatomic ion transport
A1	0015986	biological_process	proton motive force-driven ATP synthesis
A1	0016020	cellular_component	membrane
A1	0032559	molecular_function	adenyl ribonucleotide binding
A1	0043531	molecular_function	ADP binding
A1	0045259	cellular_component	proton-transporting ATP synthase complex
A1	0046034	biological_process	ATP metabolic process
A1	0046872	molecular_function	metal ion binding
A1	0046933	molecular_function	proton-transporting ATP synthase activity, rotational mechanism
A1	1902600	biological_process	proton transmembrane transport
B1	0000166	molecular_function	nucleotide binding
B1	0005524	molecular_function	ATP binding
B1	0006754	biological_process	ATP biosynthetic process
B1	0006811	biological_process	monoatomic ion transport
B1	0015986	biological_process	proton motive force-driven ATP synthesis
B1	0016020	cellular_component	membrane
B1	0032559	molecular_function	adenyl ribonucleotide binding
B1	0043531	molecular_function	ADP binding
B1	0045259	cellular_component	proton-transporting ATP synthase complex
B1	0046034	biological_process	ATP metabolic process
B1	0046872	molecular_function	metal ion binding
B1	0046933	molecular_function	proton-transporting ATP synthase activity, rotational mechanism
B1	1902600	biological_process	proton transmembrane transport
C1	0000166	molecular_function	nucleotide binding
C1	0005524	molecular_function	ATP binding
C1	0006754	biological_process	ATP biosynthetic process
C1	0006811	biological_process	monoatomic ion transport
C1	0015986	biological_process	proton motive force-driven ATP synthesis
C1	0016020	cellular_component	membrane
C1	0032559	molecular_function	adenyl ribonucleotide binding
C1	0043531	molecular_function	ADP binding
C1	0045259	cellular_component	proton-transporting ATP synthase complex
C1	0046034	biological_process	ATP metabolic process
C1	0046872	molecular_function	metal ion binding
C1	0046933	molecular_function	proton-transporting ATP synthase activity, rotational mechanism
C1	1902600	biological_process	proton transmembrane transport
d	0005743	cellular_component	mitochondrial inner membrane
d	0006811	biological_process	monoatomic ion transport
d	0015078	molecular_function	proton transmembrane transporter activity
d	0015986	biological_process	proton motive force-driven ATP synthesis
d	0045259	cellular_component	proton-transporting ATP synthase complex
d	1902600	biological_process	proton transmembrane transport
D1	0000166	molecular_function	nucleotide binding
D1	0005524	molecular_function	ATP binding
D1	0005743	cellular_component	mitochondrial inner membrane
D1	0006754	biological_process	ATP biosynthetic process
D1	0006811	biological_process	monoatomic ion transport
D1	0015986	biological_process	proton motive force-driven ATP synthesis
D1	0016020	cellular_component	membrane
D1	0042776	biological_process	proton motive force-driven mitochondrial ATP synthesis
D1	0045259	cellular_component	proton-transporting ATP synthase complex
D1	0046034	biological_process	ATP metabolic process
D1	0046872	molecular_function	metal ion binding
D1	0046933	molecular_function	proton-transporting ATP synthase activity, rotational mechanism
D1	1902600	biological_process	proton transmembrane transport
E1	0000166	molecular_function	nucleotide binding
E1	0005524	molecular_function	ATP binding
E1	0005743	cellular_component	mitochondrial inner membrane
E1	0006754	biological_process	ATP biosynthetic process
E1	0006811	biological_process	monoatomic ion transport
E1	0015986	biological_process	proton motive force-driven ATP synthesis
E1	0016020	cellular_component	membrane
E1	0042776	biological_process	proton motive force-driven mitochondrial ATP synthesis
E1	0045259	cellular_component	proton-transporting ATP synthase complex
E1	0046034	biological_process	ATP metabolic process
E1	0046872	molecular_function	metal ion binding
E1	0046933	molecular_function	proton-transporting ATP synthase activity, rotational mechanism
E1	1902600	biological_process	proton transmembrane transport
F1	0000166	molecular_function	nucleotide binding
F1	0005524	molecular_function	ATP binding
F1	0005743	cellular_component	mitochondrial inner membrane
F1	0006754	biological_process	ATP biosynthetic process
F1	0006811	biological_process	monoatomic ion transport
F1	0015986	biological_process	proton motive force-driven ATP synthesis
F1	0016020	cellular_component	membrane
F1	0042776	biological_process	proton motive force-driven mitochondrial ATP synthesis
F1	0045259	cellular_component	proton-transporting ATP synthase complex
F1	0046034	biological_process	ATP metabolic process
F1	0046872	molecular_function	metal ion binding
F1	0046933	molecular_function	proton-transporting ATP synthase activity, rotational mechanism
F1	1902600	biological_process	proton transmembrane transport
g1	0006754	biological_process	ATP biosynthetic process
g1	0006811	biological_process	monoatomic ion transport
g1	0015986	biological_process	proton motive force-driven ATP synthesis
g1	0016020	cellular_component	membrane
g1	0045259	cellular_component	proton-transporting ATP synthase complex
g1	0046933	molecular_function	proton-transporting ATP synthase activity, rotational mechanism
g1	1902600	biological_process	proton transmembrane transport
G1	0006754	biological_process	ATP biosynthetic process
G1	0006811	biological_process	monoatomic ion transport
G1	0015986	biological_process	proton motive force-driven ATP synthesis
G1	0016020	cellular_component	membrane
G1	0046933	molecular_function	proton-transporting ATP synthase activity, rotational mechanism
G1	1902600	biological_process	proton transmembrane transport

Functional Information from PDB Data

site_id	AC1
Number of Residues	11
Details	binding site for residue ATP C1 900

Chain	Residue
C1	GLN203
C1	GLN463
C1	MG1001
C1	THR204
C1	GLY205
C1	LYS206
C1	THR207
C1	ALA208
C1	PHE388
C1	ARG393
C1	GLN461

site_id	AC2
Number of Residues	2
Details	binding site for residue MG C1 1001

Chain	Residue
C1	THR207
C1	ATP900

site_id	AC3
Number of Residues	14
Details	binding site for residue ADP D1 900

Chain	Residue
A1	VAL402
A1	ARG404
D1	GLY176
D1	GLY178
D1	GLY180
D1	LYS181
D1	THR182
D1	VAL183
D1	GLU207
D1	ARG208
D1	TYR364
D1	SER440
D1	PHE443
D1	MG1001

site_id	AC4
Number of Residues	4
Details	binding site for residue MG D1 1001

Chain	Residue
D1	THR182
D1	GLU207
D1	GLU211
D1	ADP900

site_id	AC5
Number of Residues	15
Details	binding site for residue ATP B1 900

Chain	Residue
B1	ARG202
B1	GLN203
B1	THR204
B1	GLY205
B1	LYS206
B1	THR207
B1	ALA208
B1	PHE388
B1	ARG393
B1	GLN461
B1	ASN462
B1	GLN463
B1	MG1001
F1	ARG375
F1	ASP378

site_id	AC6
Number of Residues	2
Details	binding site for residue MG B1 1001

Chain	Residue
B1	THR207
B1	ATP900

site_id	AC7
Number of Residues	12
Details	binding site for residue ATP A1 900

Chain	Residue
A1	ARG202
A1	GLN203
A1	GLY205
A1	LYS206
A1	THR207
A1	ALA208
A1	PHE388
A1	GLN461
A1	ASN462
A1	GLN463
A1	MG1001
E1	TYR387

site_id	AC8
Number of Residues	2
Details	binding site for residue MG A1 1001

Chain	Residue
A1	THR207
A1	ATP900

site_id	AC9
Number of Residues	12
Details	binding site for residue ADP E1 900

Chain	Residue
B1	VAL402
B1	ARG404
E1	GLY178
E1	VAL179
E1	GLY180
E1	LYS181
E1	THR182
E1	VAL183
E1	TYR364
E1	PHE437
E1	SER440
E1	MG1001

site_id	AD1
Number of Residues	2
Details	binding site for residue MG E1 1001

Chain	Residue
E1	THR182
E1	ADP900

Functional Information from PROSITE/UniProt

site_id	PS00152
Number of Residues	10
Details	ATPASE_ALPHA_BETA ATP synthase alpha and beta subunits signature. PAVDPLDSTS

Chain	Residue	Details
D1	PRO365-SER374
C1	PRO394-SER403

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		Validation report (PDF)