6YNN
Crystal structure of YTHDC1 with compound DHU_DC1_135
Functional Information from GO Data
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 15 |
| Details | binding site for residue P0B A 601 |
| Chain | Residue |
| A | LYS361 |
| A | VAL429 |
| A | PRO431 |
| A | MET434 |
| A | LEU439 |
| A | ASP476 |
| A | HOH730 |
| A | ASN363 |
| A | ASN367 |
| A | TRP377 |
| A | SER378 |
| A | THR379 |
| A | LEU380 |
| A | ARG404 |
| A | TRP428 |
| site_id | AC2 |
| Number of Residues | 11 |
| Details | binding site for residue SO4 A 602 |
| Chain | Residue |
| A | GLY344 |
| A | THR345 |
| A | SER346 |
| A | LYS347 |
| A | HOH702 |
| A | HOH705 |
| A | HOH724 |
| A | HOH725 |
| A | HOH733 |
| A | HOH734 |
| A | HOH797 |
| site_id | AC3 |
| Number of Residues | 5 |
| Details | binding site for residue SO4 A 603 |
| Chain | Residue |
| A | LYS361 |
| A | ARG404 |
| A | ARG475 |
| A | ASP476 |
| A | HOH749 |
| site_id | AC4 |
| Number of Residues | 14 |
| Details | binding site for residue P0B B 601 |
| Chain | Residue |
| B | LYS361 |
| B | ASN363 |
| B | ASN367 |
| B | TRP377 |
| B | SER378 |
| B | THR379 |
| B | ARG404 |
| B | TRP428 |
| B | LEU430 |
| B | PRO431 |
| B | MET434 |
| B | LEU439 |
| B | ASP476 |
| B | HOH754 |
| site_id | AC5 |
| Number of Residues | 8 |
| Details | binding site for residue SO4 B 602 |
| Chain | Residue |
| B | ARG451 |
| B | GLU452 |
| B | HOH730 |
| B | HOH757 |
| B | HOH767 |
| B | HOH777 |
| B | HOH800 |
| B | HOH811 |
| site_id | AC6 |
| Number of Residues | 9 |
| Details | binding site for residue SO4 B 603 |
| Chain | Residue |
| A | LYS386 |
| A | GLN478 |
| A | GLU479 |
| B | LYS347 |
| B | HOH721 |
| B | HOH761 |
| B | HOH827 |
| B | HOH853 |
| B | HOH860 |
| site_id | AC7 |
| Number of Residues | 5 |
| Details | binding site for residue SO4 B 604 |
| Chain | Residue |
| B | SER419 |
| B | HIS420 |
| B | HIS421 |
| B | ARG451 |
| B | HOH708 |
| site_id | AC8 |
| Number of Residues | 6 |
| Details | binding site for residue SO4 B 605 |
| Chain | Residue |
| B | LYS361 |
| B | ARG404 |
| B | ARG475 |
| B | ASP476 |
| B | HOH706 |
| B | HOH847 |
| site_id | AC9 |
| Number of Residues | 7 |
| Details | binding site for residue SO4 B 606 |
| Chain | Residue |
| B | LYS385 |
| B | ASN388 |
| B | ARG392 |
| B | LYS457 |
| B | HOH702 |
| B | HOH703 |
| B | HOH705 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 4 |
| Details | BINDING: BINDING => ECO:0000269|PubMed:31670957, ECO:0007744|PDB:6RT4, ECO:0007744|PDB:6RT5, ECO:0007744|PDB:6RT6, ECO:0007744|PDB:6RT7 |
| Chain | Residue | Details |
| A | LYS361 | |
| A | ASP476 | |
| B | LYS361 | |
| B | ASP476 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 2 |
| Details | BINDING: BINDING => ECO:0000269|PubMed:25242552, ECO:0000269|PubMed:31670957, ECO:0007744|PDB:6RT4, ECO:0007744|PDB:6RT5, ECO:0007744|PDB:6RT6, ECO:0007744|PDB:6RT7 |
| Chain | Residue | Details |
| A | TRP377 | |
| B | TRP377 |
| site_id | SWS_FT_FI3 |
| Number of Residues | 2 |
| Details | BINDING: BINDING => ECO:0000269|PubMed:25242552 |
| Chain | Residue | Details |
| A | TRP428 | |
| B | TRP428 |
| site_id | SWS_FT_FI4 |
| Number of Residues | 2 |
| Details | MOD_RES: Phosphoserine => ECO:0007744|PubMed:18669648, ECO:0007744|PubMed:20068231, ECO:0007744|PubMed:23186163 |
| Chain | Residue | Details |
| A | SER424 | |
| B | SER424 |
| site_id | SWS_FT_FI5 |
| Number of Residues | 2 |
| Details | MOD_RES: Phosphoserine => ECO:0007744|PubMed:20068231 |
| Chain | Residue | Details |
| A | SER435 | |
| B | SER435 |
